Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006905

Physical Location & Seq

Genomic Coordinates Reverse (-)

4467552 .. 4470157

Gene Structure 2606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g07542.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1707 bp

ATGGCAGCGGCGCAGACCAACATCAGCACAGACCAGTCTGCTCTTCTTGCTCTCAAAGCCCATATCACCAGTGATCCTCATAACTTGATCTTCACCAACTGGTCAACCACCACATCTGTTTGCAACTGGTTTGGCGTTACCTGTGGCGCACGCCACCTTAGAGCCACCGCCTTGAACCTCTCCTACTTTGATCTCGAAGGAACTATTCCTCCACAGCTAGGCAACCTATCATTTCTTGTTTATATTAACTTGAAAAACAACAGTTTCCACGGTTCCTTACCCAAGGAATTGGCTCGTTTGCAGCGATTGAAGTTCATTAGTTTTACATTCAACAAGTTTATTGGAAGCATTCCGTCATGGTTTGAGTTTTTATTCAATCTTCAAATCTTGTCTTTGTACGGTAATAAATTTTCAGGTTTCATACCAGCAGCCATCTTCAACTTATCTGCACTGCAAGTTATTGATTTGCGGTATAACCAACTCTCAGGTAGTATACCGAGAGAAATGGGAAATCTAACAACGCTGAAGGAGATTTACCTTGATAACAATAATTTCATAGAAATTCCAAATGAGATTGGCTCTTTACATCAACTAGAGAAGTTACATGTGCAAGAAAATGCCTTGGAAGGAAATGTTCCTATGAATCTTCCTTATATTCAAAACTTGGATTTCGGTGATAACCAGCTTGAACGTCCACTTCCATCCATATATTGGCATTGCAAACAACTTGTTCAATTAGTAAATTGCAGCGGAAGCATATCCAACAATATTGGGAATGCAACTCAGTTAAAGAGGATTTATCTTGGGACAAATAAGTTGACATGTACTATACCGTATGAGATCGGTTGTCTTCATTTAGTGGAATTGGGCCTCGATTCTAATAATCTGAATGGGCTTATTCCAACCACAATCTGCAACATGTCCACAGTAATGGCAATAGGTGTAGGTTTTAATCAGCTCTTAGGTAGCCTCCCAACAAATGTAGGTCTTGGCCTTCCAAACCTACAAAAGTTTTTTGTAGGAGTAAATAATCTAGGCGGAGTAATCCCCAAATCCATCTCCAATGCTTCTCAACTCACGCACCTAGACTTGGGAGAAAACATTCTTTCGGGCTTTATTCCTAGCACATTATGTGCTTTAGCAAACCTTGAGTGGCTTGACTTATTTGAGAATCATCTGACTCTCGATACTAGTACTCCAGAGGTAAATGTTCTTTCTTGCTTGGCAAATCTCAAAAGGTTGACAATTTTACACCTCTCAAGCAATCCATTAAATGCCTACCTCCCTATTTCATCCTTTCGGAATCTCTCTACATCACTTCAGAATGTTTATTTATACAATTGCAACTTGAAAGGTAATATACCTGATGATATAAGCAACTTGAGCAGCTTGATCAAATTATCCATGTTTAACAACAAATTGAGCGGATCAATTCCAACCTCACTAGGAAATCTGAGAAATATCCAGGGTTTGATTTTAGGCGGTAACGAGTTGCAAGGACACATCCCGGATGAACTTTGTCAACTCCGAACCCTTGGTTACTTAGACTTGTATGGTAACCAGCTTTATGGCTCTATACCTTCTTGTTTGGGTCAAGTTCTCACCGCTAAGATATCTCAGTTTAGATTCCAATTTGTTGAATTCCACAATACCATCTACTTTATGGGCACTCACATATATCTTGTTTCTAAACTTATCAGCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

569

Amino Acids

62.85

Weight (kDa)

6.53

Isoelectric Point (pI)

31.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	9 - 48	6e-11	Leucine rich repeat N-terminal domain
LRR_8	PF13855	118 - 161	2.6e-06	Leucine rich repeat
LRR_14	PF23598	124 - 204	2.2e-08	Leucine-rich repeat region
LRR_8	PF13855	333 - 393	1e-08	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006905)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13800 FvH4_3g07542
malus_domestica	MD03G1281200.v1.1 MD05G1297900.v1.1 MD10G1277300.v1.1
pyrus_communis	pycom03g13590 pycom03g13600 pycom03g13630
rosa_chinensis	RchiOBHm_Chr5g0010951 RchiOBHm_Chr5g0011281 RchiOBHm_Chr5g0011351
rosa_multiflora	Rmu_co8418559.1_g000001 Rmu_sc0000299.1_g000022 Rmu_sc0001878.1_g000001 Rmu_sc0004283.1_g000034 Rmu_ssc0000400.1_g000090
rosa_roxburghii	Rroxscaffold_1G00040170 Rroxscaffold_1G00040240 Rroxscaffold_1G00040270 Rroxscaffold_1G00040890 Rroxscaffold_1G00065140
rosa_rugosa	Rorug02G0188900 Rorug06G0110500
rosa_samantha	Rh5BG083200 Rh5BG288500
rosa_wichuraiana	Rw6G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	711
AccBSI	CCGCTC	1 cut(s)	1425
AccI	GTMKAC	1 cut(s)	493
AciI	CCGC	8 cut(s)	8, 168, 469, 750, 1038, 1425, 1482, 1605
AclWI	GGATC	2 cut(s)	68, 1435
AcsI	RAATTY	3 cut(s)	407, 561, 1640
AcuI	CTGAAG	2 cut(s)	545, 1304
AfaI	GTAC	3 cut(s)	398, 826, 1195
AfiI	CCNNNNNNNGG	3 cut(s)	218, 711, 1090
AflIII	ACRYGT	3 cut(s)	604, 821, 918
AhlI	ACTAGT	1 cut(s)	1190
AjnI	CCWGG	1 cut(s)	1464
AloI	GAACNNNNNNTCC	2 cut(s)	193, 225
AluBI	AGCT	5 cut(s)	217, 685, 958, 1389, 1564
AluI	AGCT	5 cut(s)	217, 685, 958, 1389, 1564
AlwI	GGATC	2 cut(s)	68, 1435
AoxI	GGCC	2 cut(s)	868, 991
ApeKI	GCWGC	5 cut(s)	5, 301, 428, 747, 1386
ApoI	RAATTY	3 cut(s)	407, 561, 1640
Asp700I	GAANNNNTTC	1 cut(s)	1101
AspLEI	GCGC	2 cut(s)	13, 149
AspS9I	GGNCC	1 cut(s)	868
AsuC2I	CCSGG	1 cut(s)	1508
AsuHPI	GGTGA	4 cut(s)	58, 85, 686, 1594
BaeGI	GKGCMC	1 cut(s)	1670
BarI	GAAGNNNNNNTAC	2 cut(s)	518, 550
BbsI	GAAGAC	1 cut(s)	842
BbvI	GCAGC	5 cut(s)	17, 313, 440, 759, 1398
BccI	CCATC	4 cut(s)	440, 709, 1064, 1661
BciT130I	CCWGG	1 cut(s)	1466
BclI	TGATCA	1 cut(s)	1392
BcnI	CCSGG	1 cut(s)	1508
BcuI	ACTAGT	1 cut(s)	1190
BfaI	CTAG	7 cut(s)	218, 593, 1034, 1085, 1122, 1191, 1445
BisI	GCNGC	6 cut(s)	6, 9, 302, 429, 748, 1387
BlsI	GCNGC	6 cut(s)	7, 10, 303, 430, 749, 1388
BmcAI	AGTACT	1 cut(s)	1195
Bme1390I	CCNGG	2 cut(s)	1466, 1508
BmgT120I	GGNCC	1 cut(s)	868
BmiI	GGNNCC	1 cut(s)	274
BmrFI	CCNGG	2 cut(s)	1466, 1508
BpiI	GAAGAC	1 cut(s)	842
BplI	GAGNNNNNCTC	2 cut(s)	563, 595
BpmI	CTGGAG	1 cut(s)	1182
BpuEI	CTTGAG	3 cut(s)	1169, 1243, 1402
BpuMI	CCSGG	1 cut(s)	1508
BsaJI	CCNNGG	5 cut(s)	268, 282, 621, 1465, 1534
BsaXI	ACNNNNNCTCC	4 cut(s)	193, 223, 1180, 1210
Bsc4I	CCNNNNNNNGG	3 cut(s)	218, 711, 1090
Bse1I	ACTGG	4 cut(s)	34, 69, 104, 131
Bse3DI	GCAATG	1 cut(s)	715
BseBI	CCWGG	1 cut(s)	1466
BseDI	CCNNGG	5 cut(s)	268, 282, 621, 1465, 1534
BseGI	GGATG	4 cut(s)	701, 1292, 1503, 1516
BseLI	CCNNNNNNNGG	3 cut(s)	218, 711, 1090
BseMI	GCAATG	1 cut(s)	715
BseMII	CTCAG	4 cut(s)	498, 797, 1445, 1631
BseNI	ACTGG	4 cut(s)	34, 69, 104, 131
BseSI	GKGCMC	1 cut(s)	1670
BseXI	GCAGC	5 cut(s)	17, 313, 440, 759, 1398
BsgI	GTGCAG	1 cut(s)	432
BshFI	GGCC	2 cut(s)	870, 993
BsiSI	CCGG	1 cut(s)	1508
BslFI	GGGAC	1 cut(s)	820
BslI	CCNNNNNNNGG	3 cut(s)	218, 711, 1090
BsmFI	GGGAC	1 cut(s)	820
BsmI	GAATGC	2 cut(s)	348, 781
BsnI	GGCC	2 cut(s)	870, 993
Bsp1286I	GDGCHC	1 cut(s)	1670
Bsp143I	GATC	6 cut(s)	73, 87, 190, 840, 1392, 1427
BspACI	CCGC	8 cut(s)	8, 168, 469, 750, 1038, 1425, 1482, 1605
BspANI	GGCC	2 cut(s)	870, 993
BspCNI	CTCAG	4 cut(s)	497, 796, 1446, 1630
BspLI	GGNNCC	1 cut(s)	274
BspPI	GGATC	2 cut(s)	68, 1435
BspQI	GCTCTTC	1 cut(s)	48
BsrBI	CCGCTC	1 cut(s)	1425
BsrDI	GCAATG	1 cut(s)	715
BsrI	ACTGG	4 cut(s)	34, 69, 104, 131
BssECI	CCNNGG	5 cut(s)	268, 282, 621, 1465, 1534
BssMI	GATC	6 cut(s)	73, 87, 190, 840, 1392, 1427
BssNAI	GTATAC	1 cut(s)	494
BssT1I	CCWWGG	3 cut(s)	282, 621, 1534
Bst1107I	GTATAC	1 cut(s)	494
Bst2UI	CCWGG	1 cut(s)	1466
Bst4CI	ACNGT	5 cut(s)	263, 272, 401, 834, 928
Bst6I	CTCTTC	1 cut(s)	48
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	8 cut(s)	158, 484, 783, 961, 1454, 1543, 1608, 1617
BstDSI	CCRYGG	1 cut(s)	268
BstEII	GGTNACC	1 cut(s)	1556
BstF5I	GGATG	4 cut(s)	701, 1292, 1503, 1516
BstHHI	GCGC	2 cut(s)	13, 149
BstKTI	GATC	6 cut(s)	76, 90, 193, 843, 1395, 1430
BstMBI	GATC	6 cut(s)	73, 87, 190, 840, 1392, 1427
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 56, 753, 1383
BstNI	CCWGG	1 cut(s)	1466
BstNSI	RCATGY	3 cut(s)	608, 825, 922
BstPI	GGTNACC	1 cut(s)	1556
BstSCI	CCNGG	2 cut(s)	1464, 1506
BstSLI	GKGCMC	1 cut(s)	1670
BstV1I	GCAGC	5 cut(s)	17, 313, 440, 759, 1398
BstV2I	GAAGAC	1 cut(s)	842
BstXI	CCANNNNNNTGG	3 cut(s)	289, 931, 1568
BstZ17I	GTATAC	1 cut(s)	494
BsuRI	GGCC	2 cut(s)	870, 993
BtgI	CCRYGG	1 cut(s)	268
BtsCI	GGATG	4 cut(s)	701, 1292, 1503, 1516
BtsI	GCAGTG	1 cut(s)	449
BtsIMutI	CAGTG	2 cut(s)	76, 449
Cac8I	GCNNGC	1 cut(s)	151
CfoI	GCGC	2 cut(s)	13, 149
Cfr13I	GGNCC	1 cut(s)	868
Csp6I	GTAC	3 cut(s)	397, 825, 1194
CviAII	CATG	5 cut(s)	357, 605, 822, 919, 1405
CviQI	GTAC	3 cut(s)	397, 825, 1194
DdeI	CTNAG	8 cut(s)	158, 484, 783, 961, 1454, 1543, 1608, 1617
DpnI	GATC	6 cut(s)	75, 89, 192, 842, 1394, 1429
DpnII	GATC	6 cut(s)	73, 87, 190, 840, 1392, 1427
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
EciI	GGCGGA	1 cut(s)	1053
Eco130I	CCWWGG	3 cut(s)	282, 621, 1534
Eco32I	GATATC	1 cut(s)	1614
Eco57I	CTGAAG	2 cut(s)	545, 1304
Eco91I	GGTNACC	1 cut(s)	1556
EcoO65I	GGTNACC	1 cut(s)	1556
EcoRI	GAATTC	1 cut(s)	1640
EcoRII	CCWGG	1 cut(s)	1464
EcoRV	GATATC	1 cut(s)	1614
EcoT14I	CCWWGG	3 cut(s)	282, 621, 1534
ErhI	CCWWGG	3 cut(s)	282, 621, 1534
FaeI	CATG	5 cut(s)	360, 608, 825, 922, 1408
FaqI	GGGAC	1 cut(s)	820
FatI	CATG	5 cut(s)	356, 604, 821, 918, 1404
FbaI	TGATCA	1 cut(s)	1392
FblI	GTMKAC	1 cut(s)	493
Fnu4HI	GCNGC	6 cut(s)	6, 9, 302, 429, 748, 1387
FokI	GGATG	4 cut(s)	688, 1279, 1490, 1523
Fsp4HI	GCNGC	6 cut(s)	6, 9, 302, 429, 748, 1387
FspBI	CTAG	7 cut(s)	218, 593, 1034, 1085, 1122, 1191, 1445
GlaI	GCGC	2 cut(s)	12, 148
GluI	GCNGC	6 cut(s)	6, 9, 302, 429, 748, 1387
GsuI	CTGGAG	1 cut(s)	1182
HaeIII	GGCC	2 cut(s)	870, 993
HapII	CCGG	1 cut(s)	1508
HhaI	GCGC	2 cut(s)	13, 149
Hin1II	CATG	5 cut(s)	360, 608, 825, 922, 1408
Hin6I	GCGC	2 cut(s)	11, 147
HinP1I	GCGC	2 cut(s)	11, 147
HincII	GTYRAC	4 cut(s)	105, 819, 1242, 1523
HindII	GTYRAC	4 cut(s)	105, 819, 1242, 1523
HinfI	GANTC	6 cut(s)	643, 875, 1171, 1180, 1303, 1626
HpaII	CCGG	1 cut(s)	1508
HphI	GGTGA	4 cut(s)	58, 85, 686, 1594
Hpy166II	GTNNAC	7 cut(s)	105, 494, 695, 819, 924, 1242, 1523
Hpy188I	TCNGA	6 cut(s)	888, 1179, 1302, 1323, 1455, 1529
Hpy188III	TCNNGA	3 cut(s)	194, 1184, 1199
Hpy8I	GTNNAC	7 cut(s)	105, 494, 695, 819, 924, 1242, 1523
HpyAV	CCTTC	5 cut(s)	191, 520, 620, 1004, 1590
HpyCH4III	ACNGT	5 cut(s)	263, 272, 401, 834, 928
HpyCH4IV	ACGT	1 cut(s)	691
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 56, 753, 1383
HpyF3I	CTNAG	8 cut(s)	158, 484, 783, 961, 1454, 1543, 1608, 1617
HpySE526I	ACGT	1 cut(s)	691
Hsp92II	CATG	5 cut(s)	360, 608, 825, 922, 1408
HspAI	GCGC	2 cut(s)	11, 147
Ksp22I	TGATCA	1 cut(s)	1392
Kzo9I	GATC	6 cut(s)	73, 87, 190, 840, 1392, 1427
LguI	GCTCTTC	1 cut(s)	48
Lsp1109I	GCAGC	5 cut(s)	17, 313, 440, 759, 1398
MaeI	CTAG	7 cut(s)	218, 593, 1034, 1085, 1122, 1191, 1445
MaeII	ACGT	1 cut(s)	691
MaeIII	GTNAC	5 cut(s)	136, 600, 1484, 1538, 1556
MalI	GATC	6 cut(s)	75, 89, 192, 842, 1394, 1429
MbiI	CCGCTC	1 cut(s)	1425
MboI	GATC	6 cut(s)	73, 87, 190, 840, 1392, 1427
MboII	GAAGA	6 cut(s)	35, 82, 371, 427, 638, 842
MfeI	CAATTG	1 cut(s)	1339
MhlI	GDGCHC	1 cut(s)	1670
MlyI	GAGTC	1 cut(s)	1174
MmeI	TCCRAC	3 cut(s)	786, 926, 1460
MroXI	GAANNNNTTC	1 cut(s)	1101
MseI	TTAA	5 cut(s)	246, 788, 951, 1271, 1410
MslI	CAYNNNNRTG	1 cut(s)	929
MspA1I	CMGCKG	2 cut(s)	8, 750
MspI	CCGG	1 cut(s)	1508
MspR9I	CCNGG	2 cut(s)	1466, 1508
MunI	CAATTG	1 cut(s)	1339
Mva1269I	GAATGC	2 cut(s)	348, 781
MvaI	CCWGG	1 cut(s)	1466
MwoI	GCNNNNNNNGC	4 cut(s)	47, 56, 753, 1383
NciI	CCSGG	1 cut(s)	1508
NdeII	GATC	6 cut(s)	73, 87, 190, 840, 1392, 1427
NlaIII	CATG	5 cut(s)	360, 608, 825, 922, 1408
NlaIV	GGNNCC	1 cut(s)	274
NspI	RCATGY	3 cut(s)	608, 825, 922
PciI	ACATGT	3 cut(s)	604, 821, 918
PciSI	GCTCTTC	1 cut(s)	48
PcsI	WCGNNNNNNNCGW	1 cut(s)	301
PctI	GAATGC	2 cut(s)	348, 781
PdmI	GAANNNNTTC	1 cut(s)	1101
PfeI	GAWTC	5 cut(s)	643, 875, 1171, 1303, 1626
PflMI	CCANNNNNTGG	1 cut(s)	711
PfoI	TCCNGGA	1 cut(s)	1506
PkrI	GCNGC	6 cut(s)	7, 10, 303, 430, 749, 1388
PleI	GAGTC	1 cut(s)	1174
PpsI	GAGTC	1 cut(s)	1174
PscI	ACATGT	3 cut(s)	604, 821, 918
Psp6I	CCWGG	1 cut(s)	1464
PspEI	GGTNACC	1 cut(s)	1556
PspGI	CCWGG	1 cut(s)	1464
PspN4I	GGNNCC	1 cut(s)	274
PspPI	GGNCC	1 cut(s)	868
PsrI	GAACNNNNNNTAC	2 cut(s)	167, 199
RsaI	GTAC	3 cut(s)	398, 826, 1195
RsaNI	GTAC	3 cut(s)	397, 825, 1194
RseI	CAYNNNNRTG	1 cut(s)	929
SapI	GCTCTTC	1 cut(s)	48
SaqAI	TTAA	5 cut(s)	246, 788, 951, 1271, 1410
SatI	GCNGC	6 cut(s)	6, 9, 302, 429, 748, 1387
Sau3AI	GATC	6 cut(s)	73, 87, 190, 840, 1392, 1427
Sau96I	GGNCC	1 cut(s)	868
ScaI	AGTACT	1 cut(s)	1195
SchI	GAGTC	1 cut(s)	1174
ScrFI	CCNGG	2 cut(s)	1466, 1508
SduI	GDGCHC	1 cut(s)	1670
SmiMI	CAYNNNNRTG	1 cut(s)	929
SmlI	CTYRAG	3 cut(s)	1148, 1258, 1381
SmoI	CTYRAG	3 cut(s)	1148, 1258, 1381
SpeI	ACTAGT	1 cut(s)	1190
SsiI	CCGC	8 cut(s)	8, 168, 469, 750, 1038, 1425, 1482, 1605
SspI	AATATT	1 cut(s)	769
SspMI	CTAG	7 cut(s)	218, 593, 1034, 1085, 1122, 1191, 1445
StyD4I	CCNGG	2 cut(s)	1464, 1506
StyI	CCWWGG	3 cut(s)	282, 621, 1534
TaaI	ACNGT	5 cut(s)	263, 272, 401, 834, 928
TaiI	ACGT	1 cut(s)	694
TaqI	TCGA	3 cut(s)	195, 873, 1185
TatI	WGTACW	2 cut(s)	824, 1193
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	5 cut(s)	643, 875, 1171, 1303, 1626
Tru1I	TTAA	5 cut(s)	246, 788, 951, 1271, 1410
Tru9I	TTAA	5 cut(s)	246, 788, 951, 1271, 1410
TscAI	CASTG	2 cut(s)	76, 456
TseI	GCWGC	5 cut(s)	5, 301, 428, 747, 1386
TspDTI	ATGAA	7 cut(s)	304, 409, 544, 656, 842, 1281, 1527
TspGWI	ACGGA	1 cut(s)	342
TspRI	CASTG	2 cut(s)	76, 456
Van91I	CCANNNNNTGG	1 cut(s)	711
XapI	RAATTY	3 cut(s)	407, 561, 1640
XceI	RCATGY	3 cut(s)	608, 825, 922
XcmI	CCANNNNNNNNNTGG	2 cut(s)	708, 1660
XmiI	GTMKAC	1 cut(s)	493
XmnI	GAANNNNTTC	1 cut(s)	1101
XspI	CTAG	7 cut(s)	218, 593, 1034, 1085, 1122, 1191, 1445
ZrmI	AGTACT	1 cut(s)	1195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.