Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004283.1

Orthogroup ID

OG0006905

Physical Location & Seq

Genomic Coordinates Reverse (-)

135101 .. 135871

Gene Structure 771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004283.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

atgcttttaaacctacatatcacattggtcccgaaatgcaaaactcatcagacaacacaagacttttatttgtttctgtcgtctgaaaaatcagacgacagaagtgttttgtcgtctgatacccccaagacacgacaccgtactagacgacagattttagttccttcagacgacagaacagttctgtcgtctgatgcactttttggcatagtgctccctgcaaacataggccttgcgcttccaaaactagaagagtttaacgccgcaaggaatcacctcagtggagtaatccccaaatccatctccaatgcttctgagctttggcttctagaactggcaggtaactctttttctggatatattccaaccaccctgtgcctcttgacaaaccttgaagagctcaatttgttcagcaacaatttgaccattgatacctcttctccagaagttaatattttttcttgtctgccaaatcttagaaatttaagggttttagacttcgaaagcaatccattaaatgcaaagctgtcgattcccttcagtaatttctctgcattacttcaaactctttatttagcaaattgcagcttgagaggtaacatccccagtgatattgggaatttgtacttaaatttaactgtggtgcatcccattttcaagtttcaccatgcagaagaaaaagagtatatctatcttgaaatctattattccggggatcttgtcagcaatgcttcttgcgacctccataatttggatgttgatgttacgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

256

Amino Acids

28.64

Weight (kDa)

5.43

Isoelectric Point (pI)

47.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006905)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13800 FvH4_3g07542
malus_domestica	MD03G1281200.v1.1 MD05G1297900.v1.1 MD10G1277300.v1.1
pyrus_communis	pycom03g13590 pycom03g13600 pycom03g13630
rosa_chinensis	RchiOBHm_Chr5g0010951 RchiOBHm_Chr5g0011281 RchiOBHm_Chr5g0011351
rosa_multiflora	Rmu_co8418559.1_g000001 Rmu_sc0000299.1_g000022 Rmu_sc0001878.1_g000001 Rmu_sc0004283.1_g000034 Rmu_ssc0000400.1_g000090
rosa_roxburghii	Rroxscaffold_1G00040170 Rroxscaffold_1G00040240 Rroxscaffold_1G00040270 Rroxscaffold_1G00040890 Rroxscaffold_1G00065140
rosa_rugosa	Rorug02G0188900 Rorug06G0110500
rosa_samantha	Rh5BG083200 Rh5BG288500
rosa_wichuraiana	Rw6G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	329
AccB7I	CCANNNNNTGG	1 cut(s)	751
AciI	CCGC	1 cut(s)	264
AclWI	GGATC	1 cut(s)	723
AcsI	RAATTY	3 cut(s)	481, 619, 631
AcuI	CTGAAG	2 cut(s)	150, 523
AdeI	CACNNNGTG	1 cut(s)	375
AfaI	GTAC	2 cut(s)	142, 626
AfiI	CCNNNNNNNGG	1 cut(s)	751
AgsI	TTSAA	4 cut(s)	395, 563, 658, 698
AleI	CACNNNNGTG	1 cut(s)	279
AluBI	AGCT	4 cut(s)	319, 400, 526, 588
AluI	AGCT	4 cut(s)	319, 400, 526, 588
Alw21I	GWGCWC	2 cut(s)	216, 402
AlwI	GGATC	1 cut(s)	723
AoxI	GGCC	1 cut(s)	229
ApeKI	GCWGC	1 cut(s)	585
ApoI	RAATTY	3 cut(s)	481, 619, 631
AspLEI	GCGC	1 cut(s)	238
AspS9I	GGNCC	1 cut(s)	28
AsuC2I	CCSGG	1 cut(s)	712
AsuHPI	GGTGA	2 cut(s)	266, 656
AsuII	TTCGAA	1 cut(s)	501
AvaII	GGWCC	1 cut(s)	28
BanII	GRGCYC	1 cut(s)	402
Bbv12I	GWGCWC	2 cut(s)	216, 402
BbvI	GCAGC	1 cut(s)	597
BccI	CCATC	1 cut(s)	308
BcgI	CGANNNNNNTGC	2 cut(s)	510, 544
BcnI	CCSGG	1 cut(s)	712
BfaI	CTAG	3 cut(s)	144, 248, 329
BfuAI	ACCTGC	1 cut(s)	329
BisI	GCNGC	2 cut(s)	264, 586
BlsI	GCNGC	2 cut(s)	265, 587
Bme1390I	CCNGG	1 cut(s)	712
Bme18I	GGWCC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	1 cut(s)	30
BmrFI	CCNGG	1 cut(s)	712
BmrI	ACTGGG	1 cut(s)	600
BmsI	GCATC	2 cut(s)	184, 655
BmuI	ACTGGG	1 cut(s)	600
BpmI	CTGGAG	1 cut(s)	426
Bpu14I	TTCGAA	1 cut(s)	501
BpuEI	CTTGAG	1 cut(s)	610
BpuMI	CCSGG	1 cut(s)	712
BsaAI	YACGTR	1 cut(s)	768
BsaJI	CCNNGG	1 cut(s)	711
BsaXI	ACNNNNNCTCC	2 cut(s)	424, 454
Bsc4I	CCNNNNNNNGG	1 cut(s)	751
Bse1I	ACTGG	2 cut(s)	339, 606
Bse3DI	GCAATG	1 cut(s)	733
BseDI	CCNNGG	1 cut(s)	711
BseGI	GGATG	3 cut(s)	600, 646, 760
BseLI	CCNNNNNNNGG	1 cut(s)	751
BseMI	GCAATG	1 cut(s)	733
BseMII	CTCAG	2 cut(s)	292, 306
BseNI	ACTGG	2 cut(s)	339, 606
BseXI	GCAGC	1 cut(s)	597
BshFI	GGCC	1 cut(s)	231
BsiHKAI	GWGCWC	2 cut(s)	216, 402
BsiSI	CCGG	1 cut(s)	711
BslFI	GGGAC	1 cut(s)	14
BslI	CCNNNNNNNGG	1 cut(s)	751
BsmFI	GGGAC	1 cut(s)	14
BsnI	GGCC	1 cut(s)	231
Bsp119I	TTCGAA	1 cut(s)	501
Bsp1286I	GDGCHC	2 cut(s)	216, 402
Bsp143I	GATC	1 cut(s)	715
BspACI	CCGC	1 cut(s)	264
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	2 cut(s)	291, 307
BspLI	GGNNCC	1 cut(s)	30
BspMI	ACCTGC	1 cut(s)	329
BspPI	GGATC	1 cut(s)	723
BspQI	GCTCTTC	1 cut(s)	390
BspT104I	TTCGAA	1 cut(s)	501
BsrDI	GCAATG	1 cut(s)	733
BsrI	ACTGG	2 cut(s)	339, 606
BssECI	CCNNGG	1 cut(s)	711
BssMI	GATC	1 cut(s)	715
Bst4CI	ACNGT	3 cut(s)	140, 181, 640
Bst6I	CTCTTC	3 cut(s)	246, 390, 442
BstBAI	YACGTR	1 cut(s)	768
BstBI	TTCGAA	1 cut(s)	501
BstDEI	CTNAG	3 cut(s)	278, 315, 476
BstF5I	GGATG	3 cut(s)	600, 646, 760
BstHHI	GCGC	1 cut(s)	238
BstKTI	GATC	1 cut(s)	718
BstMBI	GATC	1 cut(s)	715
BstSCI	CCNGG	1 cut(s)	710
BstSNI	TACGTA	1 cut(s)	768
BstV1I	GCAGC	1 cut(s)	597
BstX2I	RGATCY	1 cut(s)	715
BstYI	RGATCY	1 cut(s)	715
BsuRI	GGCC	1 cut(s)	231
BtsCI	GGATG	3 cut(s)	600, 646, 760
BtsIMutI	CAGTG	2 cut(s)	286, 613
BveI	ACCTGC	1 cut(s)	329
CfoI	GCGC	1 cut(s)	238
Cfr13I	GGNCC	1 cut(s)	28
Csp6I	GTAC	2 cut(s)	141, 625
CviAII	CATG	1 cut(s)	668
CviJI	RGCY	6 cut(s)	231, 319, 325, 400, 526, 588
CviKI_1	RGCY	6 cut(s)	231, 319, 325, 400, 526, 588
CviQI	GTAC	2 cut(s)	141, 625
DdeI	CTNAG	3 cut(s)	278, 315, 476
DpnI	GATC	1 cut(s)	717
DpnII	GATC	1 cut(s)	715
DraI	TTTAAA	1 cut(s)	9
DraIII	CACNNNGTG	1 cut(s)	375
Eam1104I	CTCTTC	3 cut(s)	246, 390, 442
EarI	CTCTTC	3 cut(s)	246, 390, 442
Ecl136II	GAGCTC	1 cut(s)	400
Eco105I	TACGTA	1 cut(s)	768
Eco147I	AGGCCT	1 cut(s)	231
Eco24I	GRGCYC	1 cut(s)	402
Eco47I	GGWCC	1 cut(s)	28
Eco53kI	GAGCTC	1 cut(s)	400
Eco57I	CTGAAG	2 cut(s)	150, 523
EcoICRI	GAGCTC	1 cut(s)	400
EcoT38I	GRGCYC	1 cut(s)	402
FaeI	CATG	1 cut(s)	671
FaiI	YATR	7 cut(s)	18, 209, 227, 360, 669, 687, 747
FaqI	GGGAC	1 cut(s)	14
FatI	CATG	1 cut(s)	667
Fnu4HI	GCNGC	2 cut(s)	264, 586
FokI	GGATG	3 cut(s)	587, 633, 767
FriOI	GRGCYC	1 cut(s)	402
Fsp4HI	GCNGC	2 cut(s)	264, 586
FspBI	CTAG	3 cut(s)	144, 248, 329
GlaI	GCGC	1 cut(s)	237
GluI	GCNGC	2 cut(s)	264, 586
GsuI	CTGGAG	1 cut(s)	426
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	1 cut(s)	711
HhaI	GCGC	1 cut(s)	238
Hin1II	CATG	1 cut(s)	671
Hin6I	GCGC	1 cut(s)	236
HinP1I	GCGC	1 cut(s)	236
HinfI	GANTC	2 cut(s)	271, 532
HpaII	CCGG	1 cut(s)	711
HphI	GGTGA	2 cut(s)	266, 656
Hpy188I	TCNGA	7 cut(s)	51, 85, 94, 118, 169, 193, 316
Hpy188III	TCNNGA	6 cut(s)	31, 329, 354, 382, 443, 695
HpyAV	CCTTC	2 cut(s)	174, 547
HpyCH4III	ACNGT	3 cut(s)	140, 181, 640
HpyCH4IV	ACGT	1 cut(s)	767
HpyCH4V	TGCA	8 cut(s)	39, 197, 221, 521, 554, 585, 646, 671
HpyF3I	CTNAG	3 cut(s)	278, 315, 476
HpySE526I	ACGT	1 cut(s)	767
Hsp92II	CATG	1 cut(s)	671
HspAI	GCGC	1 cut(s)	236
Kzo9I	GATC	1 cut(s)	715
LguI	GCTCTTC	1 cut(s)	390
LmnI	GCTCC	1 cut(s)	219
LpnPI	CCDG	8 cut(s)	231, 320, 324, 339, 386, 456, 619, 724
Lsp1109I	GCAGC	1 cut(s)	597
LweI	GCATC	2 cut(s)	184, 655
MaeI	CTAG	3 cut(s)	144, 248, 329
MaeII	ACGT	1 cut(s)	767
MaeIII	GTNAC	3 cut(s)	341, 596, 763
MalI	GATC	1 cut(s)	717
MboI	GATC	1 cut(s)	715
MboII	GAAGA	4 cut(s)	263, 407, 429, 686
MflI	RGATCY	1 cut(s)	715
MhlI	GDGCHC	2 cut(s)	216, 402
MluCI	AATT	8 cut(s)	403, 418, 481, 544, 580, 619, 631, 748
MmeI	TCCRAC	1 cut(s)	389
MnlI	CCTC	5 cut(s)	287, 389, 445, 587, 752
MseI	TTAA	7 cut(s)	8, 258, 450, 485, 515, 629, 635
MslI	CAYNNNNRTG	1 cut(s)	279
MspI	CCGG	1 cut(s)	711
MspR9I	CCNGG	1 cut(s)	712
NciI	CCSGG	1 cut(s)	712
NdeII	GATC	1 cut(s)	715
NlaIII	CATG	1 cut(s)	671
NlaIV	GGNNCC	1 cut(s)	30
NspV	TTCGAA	1 cut(s)	501
OliI	CACNNNNGTG	1 cut(s)	279
PceI	AGGCCT	1 cut(s)	231
PciSI	GCTCTTC	1 cut(s)	390
PfeI	GAWTC	2 cut(s)	271, 532
PflMI	CCANNNNNTGG	1 cut(s)	751
PkrI	GCNGC	2 cut(s)	265, 587
Ppu21I	YACGTR	1 cut(s)	768
Psp124BI	GAGCTC	1 cut(s)	402
PspN4I	GGNNCC	1 cut(s)	30
PspPI	GGNCC	1 cut(s)	28
PsuI	RGATCY	1 cut(s)	715
RsaI	GTAC	2 cut(s)	142, 626
RsaNI	GTAC	2 cut(s)	141, 625
RseI	CAYNNNNRTG	1 cut(s)	279
SacI	GAGCTC	1 cut(s)	402
SapI	GCTCTTC	1 cut(s)	390
SaqAI	TTAA	7 cut(s)	8, 258, 450, 485, 515, 629, 635
SatI	GCNGC	2 cut(s)	264, 586
Sau3AI	GATC	1 cut(s)	715
Sau96I	GGNCC	1 cut(s)	28
ScrFI	CCNGG	1 cut(s)	712
SduI	GDGCHC	2 cut(s)	216, 402
SfaNI	GCATC	2 cut(s)	184, 655
SfuI	TTCGAA	1 cut(s)	501
SinI	GGWCC	1 cut(s)	28
SmiMI	CAYNNNNRTG	1 cut(s)	279
SmlI	CTYRAG	1 cut(s)	589
SmoI	CTYRAG	1 cut(s)	589
SnaBI	TACGTA	1 cut(s)	768
Sse9I	AATT	8 cut(s)	403, 418, 481, 544, 580, 619, 631, 748
SseBI	AGGCCT	1 cut(s)	231
SsiI	CCGC	1 cut(s)	264
SspI	AATATT	1 cut(s)	454
SspMI	CTAG	3 cut(s)	144, 248, 329
SstI	GAGCTC	1 cut(s)	402
StuI	AGGCCT	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	710
TaaI	ACNGT	3 cut(s)	140, 181, 640
TaiI	ACGT	1 cut(s)	770
TaqI	TCGA	2 cut(s)	501, 530
TasI	AATT	8 cut(s)	403, 418, 481, 544, 580, 619, 631, 748
TatI	WGTACW	1 cut(s)	624
TauI	GCSGC	1 cut(s)	266
TfiI	GAWTC	2 cut(s)	271, 532
Tru1I	TTAA	7 cut(s)	8, 258, 450, 485, 515, 629, 635
Tru9I	TTAA	7 cut(s)	8, 258, 450, 485, 515, 629, 635
TscAI	CASTG	2 cut(s)	286, 613
TseI	GCWGC	1 cut(s)	585
TspRI	CASTG	2 cut(s)	286, 613
Van91I	CCANNNNNTGG	1 cut(s)	751
VpaK11BI	GGWCC	1 cut(s)	28
XapI	RAATTY	3 cut(s)	481, 619, 631
XbaI	TCTAGA	1 cut(s)	328
XspI	CTAG	3 cut(s)	144, 248, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.