Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0006905

Physical Location & Seq

Genomic Coordinates Forward (+)

14759396 .. 14760646

Gene Structure 1251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g13630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGATAAAAGTAATAGAGGTTTCTATTAATCAGCTATCAGGTAGCCTCCCAGCAAACATAGGTCTTAACGTCCCAAACCTAGAATTCCTTTTTGTAGCCCAAAATAACCTTGTGGCCGGACCACTCCCTAACCTCTCCAATGCTTCCAAGCTCAGGGAGCTAGACATGGGTTTAAACTCATTTACCGGGTTTCTTCCTATCACACTCTGTTCGTTGAAAAACCTCGAGTATCTTTCCTTTTACTCGAATCATTTGACGATTGATGCTTCTACTCCACAAGTAGCAAGCACTTTCTCTTGCTTGTTTAACCATAGAAATTTGACAGGATTATACTTGGGAGACAATCCTCTAAACACCACGATTCCAGCTTCTCGTGGCAATCTCTCTACGTCACTCCTATATGTTGATTTAAGCATTTCCAACATCAGGGGTAACATTCCAGTTGATATTGGCAACCTGAGCAGCTTGATAGCATTAGACCTGGGAAACAATCAGTTGAGTGGAGCAATTCCAACTTCAATTCAAAGGCTACAAAATCTCCAAGCTTTGTATTTGAATGATAACGTACTGCAAGGACATATCCCGTATGAATTCTGTCAACTAAACAACCTAGCCGATTTACGTTTGGGTGGTAATCGGCTCACTGGTTCTATTCCTTCCTGTTTGGGTACTTTGTCAGTAGCTCTAAGAAGTCTATCATTAGGGTCCAATTTGTTAACTTCTACAATACCATCTTCCTTGTGGGAACTCAAGTATATATTGCACCTAAACTTGTCATCCAATTCTCTAGTTGGACTACTCTCAGAAGACATAGGAAAGTTGAAAGATGTGGTGGATATGGATTTATCAAATAACCACTTCTCCGGAAACATTCCCGGTAGCATTGGTGGTCTTCAAAATATGATTAATTTGTCCTTGGCAAACAATTATTTAGAAGGCCCTATTCCCAGTTCATTTAAAACCTTGCTAAGCCTAGAATTCTTGGACTTGTCCAAAAACAATCTATCTGGAGTGATCCCAAAGTCATTGGAAGCACTCTTGTATCTCAAGCATCTGAATTTGTCTTTCAACAAACTCCAAGGAGAAATTCCAACCGGCGGGCCTTTCAGAAACTTCTCTGCTGATTCATTTGTATCAAACGGTGCACTTTGCAGTGCTTCTCGACTCCATATTCCACTATGCAAAAATAGAACAAAAGTTAAGCCAAATTGGAGAAAAGCCAAAATATCATCTCAGGGGTCATATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

417

Amino Acids

44.98

Weight (kDa)

8.46

Isoelectric Point (pI)

30.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	132 - 212	6e-07	Leucine-rich repeat region
LRR_8	PF13855	156 - 214	3.3e-08	Leucine rich repeat
LRR_14	PF23598	230 - 359	5.1e-07	Leucine-rich repeat region
LRR_8	PF13855	303 - 359	1.3e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006905)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13800 FvH4_3g07542
malus_domestica	MD03G1281200.v1.1 MD05G1297900.v1.1 MD10G1277300.v1.1
pyrus_communis	pycom03g13590 pycom03g13600 pycom03g13630
rosa_chinensis	RchiOBHm_Chr5g0010951 RchiOBHm_Chr5g0011281 RchiOBHm_Chr5g0011351
rosa_multiflora	Rmu_co8418559.1_g000001 Rmu_sc0000299.1_g000022 Rmu_sc0001878.1_g000001 Rmu_sc0004283.1_g000034 Rmu_ssc0000400.1_g000090
rosa_roxburghii	Rroxscaffold_1G00040170 Rroxscaffold_1G00040240 Rroxscaffold_1G00040270 Rroxscaffold_1G00040890 Rroxscaffold_1G00065140
rosa_rugosa	Rorug02G0188900 Rorug06G0110500
rosa_samantha	Rh5BG083200 Rh5BG288500
rosa_wichuraiana	Rw6G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	863
AciI	CCGC	1 cut(s)	1098
AclWI	GGATC	1 cut(s)	1009
AcoI	YGGCCR	1 cut(s)	114
AcsI	RAATTY	6 cut(s)	83, 316, 590, 977, 1057, 1086
AfaI	GTAC	2 cut(s)	567, 670
AfiI	CCNNNNNNNGG	3 cut(s)	153, 426, 1097
AgsI	TTSAA	7 cut(s)	217, 519, 524, 556, 823, 896, 1069
AjnI	CCWGG	1 cut(s)	480
AjuI	GAANNNNNNNTTGG	2 cut(s)	1071, 1103
AluBI	AGCT	7 cut(s)	34, 151, 160, 368, 465, 545, 683
AluI	AGCT	7 cut(s)	34, 151, 160, 368, 465, 545, 683
Alw21I	GWGCWC	1 cut(s)	1147
Alw26I	GTCTC	1 cut(s)	333
Alw44I	GTGCAC	1 cut(s)	1143
AlwI	GGATC	1 cut(s)	1009
Ama87I	CYCGRG	1 cut(s)	224
Aor13HI	TCCGGA	1 cut(s)	863
AoxI	GGCC	3 cut(s)	114, 937, 1100
ApaLI	GTGCAC	1 cut(s)	1143
ApeKI	GCWGC	1 cut(s)	462
ApoI	RAATTY	6 cut(s)	83, 316, 590, 977, 1057, 1086
AseI	ATTAAT	2 cut(s)	27, 906
AspS9I	GGNCC	4 cut(s)	119, 705, 938, 1100
AsuC2I	CCSGG	2 cut(s)	187, 876
AvaI	CYCGRG	1 cut(s)	224
AvaII	GGWCC	2 cut(s)	119, 705
BaeGI	GKGCMC	1 cut(s)	1147
BaeI	ACNNNNGTAYC	2 cut(s)	1025, 1058
BauI	CACGAG	1 cut(s)	372
BbsI	GAAGAC	2 cut(s)	813, 884
Bbv12I	GWGCWC	1 cut(s)	1147
BbvI	GCAGC	1 cut(s)	474
BccI	CCATC	1 cut(s)	739
BciT130I	CCWGG	1 cut(s)	482
BcnI	CCSGG	2 cut(s)	187, 876
BcoDI	GTCTC	1 cut(s)	333
BfaI	CTAG	5 cut(s)	80, 161, 611, 788, 974
BisI	GCNGC	1 cut(s)	463
BlpI	GCTNAGC	1 cut(s)	968
BlsI	GCNGC	1 cut(s)	464
Bme1390I	CCNGG	3 cut(s)	187, 482, 876
Bme18I	GGWCC	2 cut(s)	119, 705
BmeT110I	CYCGRG	1 cut(s)	224
BmgT120I	GGNCC	4 cut(s)	119, 705, 938, 1100
BmiI	GGNNCC	1 cut(s)	706
BmrFI	CCNGG	3 cut(s)	187, 482, 876
BmrI	ACTGGG	1 cut(s)	942
BmsI	GCATC	2 cut(s)	253, 1060
BmuI	ACTGGG	1 cut(s)	942
BpiI	GAAGAC	2 cut(s)	813, 884
BpmI	CTGGAG	1 cut(s)	1029
Bpu10I	CCTNAGC	2 cut(s)	152, 458
Bpu1102I	GCTNAGC	1 cut(s)	968
BpuEI	CTTGAG	2 cut(s)	734, 1031
BpuMI	CCSGG	2 cut(s)	187, 876
BsaJI	CCNNGG	3 cut(s)	481, 915, 1078
BsaWI	WCCGGW	1 cut(s)	863
BsaXI	ACNNNNNCTCC	4 cut(s)	522, 552, 845, 875
Bsc4I	CCNNNNNNNGG	3 cut(s)	153, 426, 1097
Bse118I	RCCGGY	1 cut(s)	1094
Bse1I	ACTGG	3 cut(s)	440, 649, 948
BseAI	TCCGGA	1 cut(s)	863
BseBI	CCWGG	1 cut(s)	482
BseDI	CCNNGG	3 cut(s)	481, 915, 1078
BseGI	GGATG	1 cut(s)	776
BseLI	CCNNNNNNNGG	3 cut(s)	153, 426, 1097
BseMII	CTCAG	4 cut(s)	166, 449, 816, 1247
BseNI	ACTGG	3 cut(s)	440, 649, 948
BseSI	GKGCMC	1 cut(s)	1147
BseXI	GCAGC	1 cut(s)	474
BseYI	CCCAGC	1 cut(s)	49
BshFI	GGCC	3 cut(s)	116, 939, 1102
BsiHKAI	GWGCWC	1 cut(s)	1147
BsiHKCI	CYCGRG	1 cut(s)	224
BsiSI	CCGG	5 cut(s)	117, 186, 864, 876, 1095
BslFI	GGGAC	1 cut(s)	56
BslI	CCNNNNNNNGG	3 cut(s)	153, 426, 1097
BsmAI	GTCTC	1 cut(s)	333
BsmFI	GGGAC	1 cut(s)	56
BsnI	GGCC	3 cut(s)	116, 939, 1102
BsoBI	CYCGRG	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	1147
Bsp13I	TCCGGA	1 cut(s)	863
Bsp143I	GATC	1 cut(s)	1014
Bsp1720I	GCTNAGC	1 cut(s)	968
BspACI	CCGC	1 cut(s)	1098
BspANI	GGCC	3 cut(s)	116, 939, 1102
BspCNI	CTCAG	4 cut(s)	165, 450, 815, 1246
BspEI	TCCGGA	1 cut(s)	863
BspLI	GGNNCC	1 cut(s)	706
BspPI	GGATC	1 cut(s)	1009
BsrFI	RCCGGY	1 cut(s)	1094
BsrI	ACTGG	3 cut(s)	440, 649, 948
BssAI	RCCGGY	1 cut(s)	1094
BssECI	CCNNGG	3 cut(s)	481, 915, 1078
BssMI	GATC	1 cut(s)	1014
BssSI	CACGAG	1 cut(s)	372
BssT1I	CCWWGG	2 cut(s)	915, 1078
Bst2BI	CACGAG	1 cut(s)	372
Bst2UI	CCWGG	1 cut(s)	482
Bst4CI	ACNGT	1 cut(s)	1142
BstC8I	GCNNGC	2 cut(s)	286, 1100
BstDEI	CTNAG	6 cut(s)	152, 458, 686, 802, 968, 1233
BstF5I	GGATG	1 cut(s)	776
BstKTI	GATC	1 cut(s)	1017
BstMAI	GTCTC	1 cut(s)	333
BstMBI	GATC	1 cut(s)	1014
BstMWI	GCNNNNNNNGC	2 cut(s)	157, 459
BstNI	CCWGG	1 cut(s)	482
BstSCI	CCNGG	3 cut(s)	185, 480, 874
BstSLI	GKGCMC	1 cut(s)	1147
BstV1I	GCAGC	1 cut(s)	474
BstV2I	GAAGAC	2 cut(s)	813, 884
BsuRI	GGCC	3 cut(s)	116, 939, 1102
BtsCI	GGATG	1 cut(s)	776
BtsI	GCAGTG	1 cut(s)	1159
BtsIMutI	CAGTG	2 cut(s)	642, 1159
Cac8I	GCNNGC	2 cut(s)	286, 1100
Cfr10I	RCCGGY	1 cut(s)	1094
Cfr13I	GGNCC	4 cut(s)	119, 705, 938, 1100
Csp6I	GTAC	2 cut(s)	566, 669
CviAII	CATG	1 cut(s)	166
CviQI	GTAC	2 cut(s)	566, 669
DdeI	CTNAG	6 cut(s)	152, 458, 686, 802, 968, 1233
DpnI	GATC	1 cut(s)	1016
DpnII	GATC	1 cut(s)	1014
DraI	TTTAAA	2 cut(s)	174, 958
EaeI	YGGCCR	1 cut(s)	114
Eco130I	CCWWGG	2 cut(s)	915, 1078
Eco47I	GGWCC	2 cut(s)	119, 705
Eco88I	CYCGRG	1 cut(s)	224
EcoO109I	RGGNCCY	1 cut(s)	938
EcoRI	GAATTC	3 cut(s)	83, 590, 977
EcoRII	CCWGG	1 cut(s)	480
EcoT14I	CCWWGG	2 cut(s)	915, 1078
ErhI	CCWWGG	2 cut(s)	915, 1078
FaeI	CATG	1 cut(s)	169
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	1 cut(s)	165
FauI	CCCGC	1 cut(s)	1091
Fnu4HI	GCNGC	1 cut(s)	463
FokI	GGATG	1 cut(s)	763
Fsp4HI	GCNGC	1 cut(s)	463
FspBI	CTAG	5 cut(s)	80, 161, 611, 788, 974
GluI	GCNGC	1 cut(s)	463
GsaI	CCCAGC	1 cut(s)	53
GsuI	CTGGAG	1 cut(s)	1029
HaeIII	GGCC	3 cut(s)	116, 939, 1102
HapII	CCGG	5 cut(s)	117, 186, 864, 876, 1095
Hin1II	CATG	1 cut(s)	169
HincII	GTYRAC	2 cut(s)	599, 717
HindII	GTYRAC	2 cut(s)	599, 717
HindIII	AAGCTT	1 cut(s)	543
HinfI	GANTC	4 cut(s)	247, 361, 1124, 1164
HpaI	GTTAAC	1 cut(s)	717
HpaII	CCGG	5 cut(s)	117, 186, 864, 876, 1095
Hpy166II	GTNNAC	3 cut(s)	599, 717, 1145
Hpy188I	TCNGA	3 cut(s)	805, 1056, 1109
Hpy188III	TCNNGA	3 cut(s)	864, 1008, 1161
Hpy8I	GTNNAC	3 cut(s)	599, 717, 1145
HpyAV	CCTTC	2 cut(s)	666, 929
HpyCH4III	ACNGT	1 cut(s)	1142
HpyCH4IV	ACGT	4 cut(s)	69, 389, 564, 622
HpyCH4V	TGCA	5 cut(s)	571, 763, 1145, 1152, 1182
HpyF10VI	GCNNNNNNNGC	2 cut(s)	157, 459
HpyF3I	CTNAG	6 cut(s)	152, 458, 686, 802, 968, 1233
HpySE526I	ACGT	4 cut(s)	69, 389, 564, 622
Hsp92II	CATG	1 cut(s)	169
Kpn2I	TCCGGA	1 cut(s)	863
KspAI	GTTAAC	1 cut(s)	717
Kzo9I	GATC	1 cut(s)	1014
LmnI	GCTCC	2 cut(s)	157, 503
Lsp1109I	GCAGC	1 cut(s)	474
LweI	GCATC	2 cut(s)	253, 1060
MaeI	CTAG	5 cut(s)	80, 161, 611, 788, 974
MaeII	ACGT	4 cut(s)	69, 389, 564, 622
MaeIII	GTNAC	2 cut(s)	390, 431
MalI	GATC	1 cut(s)	1016
MboI	GATC	1 cut(s)	1014
MboII	GAAGA	4 cut(s)	185, 726, 818, 884
MhlI	GDGCHC	1 cut(s)	1147
MlyI	GAGTC	1 cut(s)	1158
MmeI	TCCRAC	4 cut(s)	444, 536, 772, 1115
MnlI	CCTC	5 cut(s)	10, 56, 143, 233, 357
MroI	TCCGGA	1 cut(s)	863
MseI	TTAA	9 cut(s)	27, 66, 173, 306, 410, 716, 906, 957, 1200
MspI	CCGG	5 cut(s)	117, 186, 864, 876, 1095
MspR9I	CCNGG	3 cut(s)	187, 482, 876
MssI	GTTTAAAC	1 cut(s)	174
MvaI	CCWGG	1 cut(s)	482
MwoI	GCNNNNNNNGC	2 cut(s)	157, 459
NciI	CCSGG	2 cut(s)	187, 876
NdeII	GATC	1 cut(s)	1014
NlaIII	CATG	1 cut(s)	169
NlaIV	GGNNCC	1 cut(s)	706
NmuCI	GTSAC	1 cut(s)	390
PaeR7I	CTCGAG	1 cut(s)	224
PfeI	GAWTC	3 cut(s)	247, 361, 1124
PkrI	GCNGC	1 cut(s)	464
PleI	GAGTC	1 cut(s)	1158
PmeI	GTTTAAAC	1 cut(s)	174
PpsI	GAGTC	1 cut(s)	1158
PshBI	ATTAAT	2 cut(s)	27, 906
Psp6I	CCWGG	1 cut(s)	480
PspFI	CCCAGC	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	480
PspN4I	GGNNCC	1 cut(s)	706
PspPI	GGNCC	4 cut(s)	119, 705, 938, 1100
PspXI	VCTCGAGB	1 cut(s)	224
RsaI	GTAC	2 cut(s)	567, 670
RsaNI	GTAC	2 cut(s)	566, 669
SaqAI	TTAA	9 cut(s)	27, 66, 173, 306, 410, 716, 906, 957, 1200
SatI	GCNGC	1 cut(s)	463
Sau3AI	GATC	1 cut(s)	1014
Sau96I	GGNCC	4 cut(s)	119, 705, 938, 1100
SchI	GAGTC	1 cut(s)	1158
ScrFI	CCNGG	3 cut(s)	187, 482, 876
SduI	GDGCHC	1 cut(s)	1147
SfaNI	GCATC	2 cut(s)	253, 1060
Sfr274I	CTCGAG	1 cut(s)	224
SinI	GGWCC	2 cut(s)	119, 705
SlaI	CTCGAG	1 cut(s)	224
SmlI	CTYRAG	3 cut(s)	224, 749, 1046
SmoI	CTYRAG	3 cut(s)	224, 749, 1046
SsiI	CCGC	1 cut(s)	1098
SspMI	CTAG	5 cut(s)	80, 161, 611, 788, 974
StyD4I	CCNGG	3 cut(s)	185, 480, 874
StyI	CCWWGG	2 cut(s)	915, 1078
TaaI	ACNGT	1 cut(s)	1142
TaiI	ACGT	4 cut(s)	72, 392, 567, 625
TaqI	TCGA	3 cut(s)	225, 245, 1162
TfiI	GAWTC	3 cut(s)	247, 361, 1124
Tru1I	TTAA	9 cut(s)	27, 66, 173, 306, 410, 716, 906, 957, 1200
Tru9I	TTAA	9 cut(s)	27, 66, 173, 306, 410, 716, 906, 957, 1200
TscAI	CASTG	2 cut(s)	649, 1159
TseFI	GTSAC	1 cut(s)	390
TseI	GCWGC	1 cut(s)	462
Tsp45I	GTSAC	1 cut(s)	390
TspDTI	ATGAA	3 cut(s)	603, 942, 1116
TspRI	CASTG	2 cut(s)	649, 1159
VneI	GTGCAC	1 cut(s)	1143
VpaK11BI	GGWCC	2 cut(s)	119, 705
VspI	ATTAAT	2 cut(s)	27, 906
XapI	RAATTY	6 cut(s)	83, 316, 590, 977, 1057, 1086
XcmI	CCANNNNNNNNNTGG	1 cut(s)	738
XhoI	CTCGAG	1 cut(s)	224
XspI	CTAG	5 cut(s)	80, 161, 611, 788, 974

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.