Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003368

Physical Location & Seq

Genomic Coordinates Reverse (-)

7628945 .. 7633377

Gene Structure 4433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g13880.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGGGACAGGGGAAGAGGGCACACCCTCTAAGCCTTCCAAACAAGCTTCAACTGCTCAGGAAATACCGACACAGCCTTCGTACCCTGATTGGTCCAGCTCTATGCAGGCTTATTATGGTGCAGGAGCTGCTCCACCGCCCTTTTTCGCATCCTCTGTTGGTTCGCCGGCACCACATCCCTATATGTGGGGAGCCCAGCATCCTATGATGCCGCCTTATGGAACTCCTGTTCCGTACCCTGCCATATATCCTCCAGGTGGAGTATATGCTCATCCGGGTATGGTCACGACTCCTGCCTCGGTACCGCCAACAAATCCAGAGTCGGAAGGGAAGAGCACAGATGGGAAAGAGCGAGCTTCAGCCAAAAAACCTAAGGGAGCTGCAGGATTGGTTAGTGGGAAGGCTGGGGATGGTGGAAAAGCAACTTCTGGTTCCGGAAATGATGGTGCGTCACAAAGTGCTGAAAGTGGTAGCGAGGGTTCATCAGATGGAAGTGAGGAGAATGGTAACCACCAGGAGTATGGTGCAAACAAGAAGGGAAGCTTTGACAAGATGCTTGCAGATGGAGCGAATGCACAAAATAACACGGGTTCAGTGCCTGGGAAGCCTGTAGTTTCTATGCCTGCAACAAGTCTGAATATGGGAATGGACTTGTGGAATCCATCCCCTGCTGGTGCCGGAACTGCAAAAATGAGAGGAAATCAATCTGGAGCCCCATCAGCTGTCGGTGGTGACCATTGGATTCAGGATGAACGGGAACTGAAAAGACAGAAAAGGAAGCAGTCAAATAGGGAGTCTGCTAGGAGGTCAAGATTGAGGAAACAGGCGGAGTGTGAAGAGCTACAAAAGAGTGTACATGGACTGACAAATGAGAATCACGGCCTTAAAGATGAGCTGCAGAGACTCTCCCAGGAGTGCGAGAAGCTTGCGTCTGAAAATACTTCTATAAAGGAAGAGTTGACACGATTGTGTGGACCAGATTTAGTAGCGAACATTGAACATCAATCTCATGGTGGTGAAGGTAACAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

344

Amino Acids

35.8

Weight (kDa)

6.17

Isoelectric Point (pI)

56.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFMR	PF07777	1 - 94	9.8e-34	G-box binding protein MFMR
bZIP_1	PF00170	251 - 313	1.7e-20	bZIP transcription factor
bZIP_2	PF07716	253 - 305	2.9e-09	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36730 AT4G36730
fragaria_vesca	FvH4_1g13880 FvH4_1g13880 FvH4_1g13880 FvH4_1g13880 FvH4_1g13880
malus_domestica	MD15G1266700.v1.1
prunus_persica	Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1
pyrus_communis	pycom02g11970 pycom15g23210
rosa_chinensis	RchiOBHm_Chr2g0102191
rosa_laevigata	RLG00000017087 RLG00000017137
rosa_multiflora	Rmu_co8040408.1_g000001 Rmu_co8264951.1_g000001 Rmu_sc0010937.1_g000010 Rmu_sc0011183.1_g000011 Rmu_sc0020365.1_g000005
rosa_roxburghii	Rroxscaffold_2G00140700 Rroxscaffold_2G00140710 Rroxscaffold_2G00141220
rosa_rugosa	Rorug02G0105200 Rorug02G0105300 Rorug02G0105300 Rorug02G0105300
rosa_samantha	Rh2AG153400 Rh2BG159300 Rh2CG158800 Rh2DG159000
rosa_wichuraiana	Rw2G011980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	301
AccB1I	GGYRCC	3 cut(s)	169, 301, 674
AccIII	TCCGGA	1 cut(s)	434
AciI	CCGC	4 cut(s)	137, 212, 305, 827
AcuI	CTGAAG	1 cut(s)	342
AdeI	CACNNNGTG	1 cut(s)	458
AfaI	GTAC	4 cut(s)	83, 236, 303, 855
AfiI	CCNNNNNNNGG	3 cut(s)	186, 218, 257
AgsI	TTSAA	2 cut(s)	51, 998
AjnI	CCWGG	4 cut(s)	253, 513, 598, 909
AleI	CACNNNNGTG	1 cut(s)	967
AloI	GAACNNNNNNTCC	4 cut(s)	213, 214, 245, 246
Alw21I	GWGCWC	1 cut(s)	338
Alw26I	GTCTC	1 cut(s)	895
AlwNI	CAGNNNCTG	2 cut(s)	128, 599
Aor13HI	TCCGGA	1 cut(s)	434
AoxI	GGCC	1 cut(s)	880
ApeKI	GCWGC	3 cut(s)	128, 380, 895
ArsI	GACNNNNNNTTYG	6 cut(s)	61, 93, 305, 337, 779, 811
Asp718I	GGTACC	1 cut(s)	301
AspS9I	GGNCC	2 cut(s)	93, 974
AsuC2I	CCSGG	1 cut(s)	276
AsuHPI	GGTGA	2 cut(s)	743, 1028
AvaII	GGWCC	2 cut(s)	93, 974
AxyI	CCTNAGG	1 cut(s)	372
BaeGI	GKGCMC	1 cut(s)	23
BanI	GGYRCC	3 cut(s)	169, 301, 674
BanII	GRGCYC	2 cut(s)	196, 715
Bbv12I	GWGCWC	1 cut(s)	338
BbvI	GCAGC	3 cut(s)	115, 367, 882
BccI	CCATC	7 cut(s)	335, 404, 437, 482, 557, 670, 724
BceAI	ACGGC	1 cut(s)	895
BcgI	CGANNNNNNTGC	2 cut(s)	908, 942
BciT130I	CCWGG	4 cut(s)	255, 515, 600, 911
BcnI	CCSGG	1 cut(s)	276
BcoDI	GTCTC	1 cut(s)	895
BfaI	CTAG	1 cut(s)	801
BfmI	CTRYAG	3 cut(s)	381, 609, 896
BisI	GCNGC	4 cut(s)	129, 212, 381, 896
BlsI	GCNGC	4 cut(s)	130, 213, 382, 897
Bme1390I	CCNGG	5 cut(s)	255, 276, 515, 600, 911
Bme18I	GGWCC	2 cut(s)	93, 974
BmgT120I	GGNCC	2 cut(s)	93, 974
BmiI	GGNNCC	6 cut(s)	171, 193, 303, 433, 676, 712
BmrFI	CCNGG	5 cut(s)	255, 276, 515, 600, 911
BmsI	GCATC	4 cut(s)	158, 198, 208, 543
BpmI	CTGGAG	2 cut(s)	237, 729
Bpu10I	CCTNAGC	1 cut(s)	57
BpuMI	CCSGG	1 cut(s)	276
BsaJI	CCNNGG	3 cut(s)	297, 599, 909
BsaWI	WCCGGW	1 cut(s)	434
Bsc4I	CCNNNNNNNGG	3 cut(s)	186, 218, 257
Bse118I	RCCGGY	1 cut(s)	166
Bse21I	CCTNAGG	1 cut(s)	372
BseAI	TCCGGA	1 cut(s)	434
BseBI	CCWGG	4 cut(s)	255, 515, 600, 911
BseDI	CCNNGG	3 cut(s)	297, 599, 909
BseGI	GGATG	7 cut(s)	149, 175, 199, 271, 415, 662, 754
BseLI	CCNNNNNNNGG	3 cut(s)	186, 218, 257
BseMII	CTCAG	1 cut(s)	71
BseRI	GAGGAG	1 cut(s)	512
BseSI	GKGCMC	1 cut(s)	23
BseXI	GCAGC	3 cut(s)	115, 367, 882
BseYI	CCCAGC	2 cut(s)	195, 404
BsgI	GTGCAG	1 cut(s)	141
BshFI	GGCC	1 cut(s)	882
BshNI	GGYRCC	3 cut(s)	169, 301, 674
BsiHKAI	GWGCWC	1 cut(s)	338
BsiSI	CCGG	4 cut(s)	167, 275, 435, 678
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	3 cut(s)	186, 218, 257
BsmAI	GTCTC	1 cut(s)	895
BsmFI	GGGAC	1 cut(s)	19
BsmI	GAATGC	1 cut(s)	577
BsnI	GGCC	1 cut(s)	882
Bsp1286I	GDGCHC	4 cut(s)	23, 196, 338, 715
Bsp13I	TCCGGA	1 cut(s)	434
Bsp1407I	TGTACA	1 cut(s)	853
BspACI	CCGC	4 cut(s)	137, 212, 305, 827
BspANI	GGCC	1 cut(s)	882
BspCNI	CTCAG	1 cut(s)	70
BspEI	TCCGGA	1 cut(s)	434
BspLI	GGNNCC	6 cut(s)	171, 193, 303, 433, 676, 712
BspMAI	CTGCAG	2 cut(s)	385, 900
BspQI	GCTCTTC	2 cut(s)	326, 831
BspT107I	GGYRCC	3 cut(s)	169, 301, 674
BsrFI	RCCGGY	1 cut(s)	166
BsrGI	TGTACA	1 cut(s)	853
BssAI	RCCGGY	1 cut(s)	166
BssECI	CCNNGG	3 cut(s)	297, 599, 909
Bst2UI	CCWGG	4 cut(s)	255, 515, 600, 911
Bst4CI	ACNGT	1 cut(s)	1028
Bst6I	CTCTTC	4 cut(s)	9, 326, 831, 948
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstAUI	TGTACA	1 cut(s)	853
BstC8I	GCNNGC	6 cut(s)	108, 168, 354, 558, 624, 927
BstDEI	CTNAG	3 cut(s)	30, 57, 372
BstEII	GGTNACC	2 cut(s)	506, 731
BstF5I	GGATG	7 cut(s)	149, 175, 199, 271, 415, 662, 754
BstMAI	GTCTC	1 cut(s)	895
BstMWI	GCNNNNNNNGC	6 cut(s)	53, 128, 566, 604, 683, 719
BstNI	CCWGG	4 cut(s)	255, 515, 600, 911
BstPI	GGTNACC	2 cut(s)	506, 731
BstSCI	CCNGG	5 cut(s)	253, 274, 513, 598, 909
BstSFI	CTRYAG	3 cut(s)	381, 609, 896
BstSLI	GKGCMC	1 cut(s)	23
BstV1I	GCAGC	3 cut(s)	115, 367, 882
BstXI	CCANNNNNNTGG	1 cut(s)	521
Bsu36I	CCTNAGG	1 cut(s)	372
BsuRI	GGCC	1 cut(s)	882
BtsCI	GGATG	7 cut(s)	149, 175, 199, 271, 415, 662, 754
BtsIMutI	CAGTG	1 cut(s)	600
Cac8I	GCNNGC	6 cut(s)	108, 168, 354, 558, 624, 927
CaiI	CAGNNNCTG	2 cut(s)	128, 599
Cfr10I	RCCGGY	1 cut(s)	166
Cfr13I	GGNCC	2 cut(s)	93, 974
CseI	GACGC	2 cut(s)	438, 918
Csp6I	GTAC	4 cut(s)	82, 235, 302, 854
CviAII	CATG	2 cut(s)	857, 1010
CviQI	GTAC	4 cut(s)	82, 235, 302, 854
DdeI	CTNAG	3 cut(s)	30, 57, 372
DraIII	CACNNNGTG	1 cut(s)	458
Eam1104I	CTCTTC	4 cut(s)	9, 326, 831, 948
EarI	CTCTTC	4 cut(s)	9, 326, 831, 948
EciI	GGCGGA	1 cut(s)	842
Eco24I	GRGCYC	2 cut(s)	196, 715
Eco47I	GGWCC	2 cut(s)	93, 974
Eco57I	CTGAAG	1 cut(s)	342
Eco81I	CCTNAGG	1 cut(s)	372
Eco91I	GGTNACC	2 cut(s)	506, 731
EcoO65I	GGTNACC	2 cut(s)	506, 731
EcoRII	CCWGG	4 cut(s)	253, 513, 598, 909
EcoT38I	GRGCYC	2 cut(s)	196, 715
FaeI	CATG	2 cut(s)	860, 1013
FalI	AAGNNNNNCTT	2 cut(s)	527, 559
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	2 cut(s)	856, 1009
Fnu4HI	GCNGC	4 cut(s)	129, 212, 381, 896
FokI	GGATG	7 cut(s)	136, 162, 186, 258, 422, 649, 761
FriOI	GRGCYC	2 cut(s)	196, 715
Fsp4HI	GCNGC	4 cut(s)	129, 212, 381, 896
FspBI	CTAG	1 cut(s)	801
GluI	GCNGC	4 cut(s)	129, 212, 381, 896
GsaI	CCCAGC	2 cut(s)	199, 408
GsuI	CTGGAG	2 cut(s)	237, 729
HaeIII	GGCC	1 cut(s)	882
HapII	CCGG	4 cut(s)	167, 275, 435, 678
HgaI	GACGC	2 cut(s)	438, 918
Hin1II	CATG	2 cut(s)	860, 1013
HincII	GTYRAC	1 cut(s)	960
HindII	GTYRAC	1 cut(s)	960
HindIII	AAGCTT	3 cut(s)	45, 541, 923
HinfI	GANTC	7 cut(s)	289, 320, 658, 742, 794, 874, 903
HpaII	CCGG	4 cut(s)	167, 275, 435, 678
HphI	GGTGA	2 cut(s)	743, 1028
Hpy166II	GTNNAC	3 cut(s)	854, 960, 974
Hpy188I	TCNGA	4 cut(s)	325, 487, 636, 934
Hpy188III	TCNNGA	7 cut(s)	59, 286, 317, 435, 708, 746, 810
Hpy8I	GTNNAC	3 cut(s)	854, 960, 974
HpyAV	CCTTC	6 cut(s)	45, 87, 320, 394, 529, 1013
HpyCH4III	ACNGT	1 cut(s)	1028
HpyCH4V	TGCA	9 cut(s)	106, 122, 383, 527, 560, 575, 626, 686, 898
HpyF10VI	GCNNNNNNNGC	6 cut(s)	53, 128, 566, 604, 683, 719
HpyF3I	CTNAG	3 cut(s)	30, 57, 372
Hsp92II	CATG	2 cut(s)	860, 1013
Kpn2I	TCCGGA	1 cut(s)	434
KpnI	GGTACC	1 cut(s)	305
KroI	GCCGGC	1 cut(s)	166
KroNI	GCCGGC	1 cut(s)	168
LguI	GCTCTTC	2 cut(s)	326, 831
LmnI	GCTCC	6 cut(s)	125, 136, 191, 377, 566, 710
Lsp1109I	GCAGC	3 cut(s)	115, 367, 882
LweI	GCATC	4 cut(s)	158, 198, 208, 543
MaeI	CTAG	1 cut(s)	801
MaeIII	GTNAC	5 cut(s)	283, 450, 506, 731, 1022
MboII	GAAGA	4 cut(s)	26, 343, 848, 965
MhlI	GDGCHC	4 cut(s)	23, 196, 338, 715
MlyI	GAGTC	4 cut(s)	283, 329, 803, 897
MmeI	TCCRAC	1 cut(s)	303
MroI	TCCGGA	1 cut(s)	434
MroNI	GCCGGC	1 cut(s)	166
MseI	TTAA	1 cut(s)	885
MslI	CAYNNNNRTG	2 cut(s)	967, 1014
MspA1I	CMGCKG	1 cut(s)	722
MspI	CCGG	4 cut(s)	167, 275, 435, 678
MspR9I	CCNGG	5 cut(s)	255, 276, 515, 600, 911
Mva1269I	GAATGC	1 cut(s)	577
MvaI	CCWGG	4 cut(s)	255, 515, 600, 911
MwoI	GCNNNNNNNGC	6 cut(s)	53, 128, 566, 604, 683, 719
NaeI	GCCGGC	1 cut(s)	168
NciI	CCSGG	1 cut(s)	276
NgoMIV	GCCGGC	1 cut(s)	166
NlaIII	CATG	2 cut(s)	860, 1013
NlaIV	GGNNCC	6 cut(s)	171, 193, 303, 433, 676, 712
NmuCI	GTSAC	3 cut(s)	283, 450, 731
OliI	CACNNNNGTG	1 cut(s)	967
PciSI	GCTCTTC	2 cut(s)	326, 831
PctI	GAATGC	1 cut(s)	577
PdiI	GCCGGC	1 cut(s)	168
PfeI	GAWTC	3 cut(s)	658, 742, 874
PkrI	GCNGC	4 cut(s)	130, 213, 382, 897
PleI	GAGTC	4 cut(s)	283, 328, 802, 897
PpsI	GAGTC	4 cut(s)	283, 328, 802, 897
Psp6I	CCWGG	4 cut(s)	253, 513, 598, 909
PspEI	GGTNACC	2 cut(s)	506, 731
PspFI	CCCAGC	2 cut(s)	195, 404
PspGI	CCWGG	4 cut(s)	253, 513, 598, 909
PspN4I	GGNNCC	6 cut(s)	171, 193, 303, 433, 676, 712
PspPI	GGNCC	2 cut(s)	93, 974
PsrI	GAACNNNNNNTAC	2 cut(s)	463, 495
PstI	CTGCAG	2 cut(s)	385, 900
PstNI	CAGNNNCTG	2 cut(s)	128, 599
PvuII	CAGCTG	1 cut(s)	722
RsaI	GTAC	4 cut(s)	83, 236, 303, 855
RsaNI	GTAC	4 cut(s)	82, 235, 302, 854
RseI	CAYNNNNRTG	2 cut(s)	967, 1014
SapI	GCTCTTC	2 cut(s)	326, 831
SaqAI	TTAA	1 cut(s)	885
SatI	GCNGC	4 cut(s)	129, 212, 381, 896
Sau96I	GGNCC	2 cut(s)	93, 974
SchI	GAGTC	4 cut(s)	283, 329, 803, 897
ScrFI	CCNGG	5 cut(s)	255, 276, 515, 600, 911
SduI	GDGCHC	4 cut(s)	23, 196, 338, 715
SfaNI	GCATC	4 cut(s)	158, 198, 208, 543
SfcI	CTRYAG	3 cut(s)	381, 609, 896
SinI	GGWCC	2 cut(s)	93, 974
SmiMI	CAYNNNNRTG	2 cut(s)	967, 1014
SsiI	CCGC	4 cut(s)	137, 212, 305, 827
SspMI	CTAG	1 cut(s)	801
StyD4I	CCNGG	5 cut(s)	253, 274, 513, 598, 909
TaaI	ACNGT	1 cut(s)	1028
TatI	WGTACW	1 cut(s)	853
TauI	GCSGC	1 cut(s)	214
TfiI	GAWTC	3 cut(s)	658, 742, 874
Tru1I	TTAA	1 cut(s)	885
Tru9I	TTAA	1 cut(s)	885
TscAI	CASTG	1 cut(s)	600
TseFI	GTSAC	3 cut(s)	283, 450, 731
TseI	GCWGC	3 cut(s)	128, 380, 895
Tsp45I	GTSAC	3 cut(s)	283, 450, 731
TspDTI	ATGAA	2 cut(s)	471, 765
TspGWI	ACGGA	1 cut(s)	222
TspRI	CASTG	1 cut(s)	600
VpaK11BI	GGWCC	2 cut(s)	93, 974
XcmI	CCANNNNNNNNNTGG	1 cut(s)	518
XspI	CTAG	1 cut(s)	801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.