Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010937.1

Orthogroup ID

OG0003368

Physical Location & Seq

Genomic Coordinates Forward (+)

60210 .. 60823

Gene Structure 614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010937.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

atggggacaggggaagagggcacaccctctaagccttccaaacaagcttctacagctcaggaaatacctacacagccttcgtatcctgattggtccagctctatgcaggcttattatggtgctggagctgctccaccgccctttttcgcttcctctgttgcttcaccagcaccgcacccatatatgtggggagcccagcatcctatgatgccgccttatggaactcctgttccgtaccctgctatatatcctccaggtggagtttatgctcatccgggtatggtcacggtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

97

Amino Acids

10.15

Weight (kDa)

5.75

Isoelectric Point (pI)

60.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36730 AT4G36730
fragaria_vesca	FvH4_1g13880 FvH4_1g13880 FvH4_1g13880 FvH4_1g13880 FvH4_1g13880
malus_domestica	MD15G1266700.v1.1
prunus_persica	Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1
pyrus_communis	pycom02g11970 pycom15g23210
rosa_chinensis	RchiOBHm_Chr2g0102191
rosa_laevigata	RLG00000017087 RLG00000017137
rosa_multiflora	Rmu_co8040408.1_g000001 Rmu_co8264951.1_g000001 Rmu_sc0010937.1_g000010 Rmu_sc0011183.1_g000011 Rmu_sc0020365.1_g000005
rosa_roxburghii	Rroxscaffold_2G00140700 Rroxscaffold_2G00140710 Rroxscaffold_2G00141220
rosa_rugosa	Rorug02G0105200 Rorug02G0105300 Rorug02G0105300 Rorug02G0105300
rosa_samantha	Rh2AG153400 Rh2BG159300 Rh2CG158800 Rh2DG159000
rosa_wichuraiana	Rw2G011980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	137, 173, 212
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	2 cut(s)	218, 257
AjnI	CCWGG	1 cut(s)	253
AloI	GAACNNNNNNTCC	4 cut(s)	213, 214, 245, 246
AluBI	AGCT	4 cut(s)	47, 56, 99, 128
AluI	AGCT	4 cut(s)	47, 56, 99, 128
ApeKI	GCWGC	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	93
AsuC2I	CCSGG	1 cut(s)	276
AsuHPI	GGTGA	1 cut(s)	156
AvaII	GGWCC	1 cut(s)	93
BaeGI	GKGCMC	1 cut(s)	23
BanII	GRGCYC	1 cut(s)	196
BbvI	GCAGC	1 cut(s)	115
BciT130I	CCWGG	1 cut(s)	255
BciVI	GTATCC	1 cut(s)	93
BcnI	CCSGG	1 cut(s)	276
BfmI	CTRYAG	1 cut(s)	51
BfuI	GTATCC	1 cut(s)	93
BisI	GCNGC	2 cut(s)	129, 212
BlsI	GCNGC	2 cut(s)	130, 213
Bme1390I	CCNGG	2 cut(s)	255, 276
Bme18I	GGWCC	1 cut(s)	93
BmgT120I	GGNCC	1 cut(s)	93
BmiI	GGNNCC	1 cut(s)	193
BmrFI	CCNGG	2 cut(s)	255, 276
BmsI	GCATC	2 cut(s)	198, 208
BpmI	CTGGAG	2 cut(s)	144, 237
Bpu10I	CCTNAGC	1 cut(s)	57
BpuMI	CCSGG	1 cut(s)	276
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 257
BseBI	CCWGG	1 cut(s)	255
BseGI	GGATG	2 cut(s)	199, 271
BseLI	CCNNNNNNNGG	2 cut(s)	218, 257
BseMII	CTCAG	1 cut(s)	71
BseSI	GKGCMC	1 cut(s)	23
BseXI	GCAGC	1 cut(s)	115
BseYI	CCCAGC	1 cut(s)	195
BsiSI	CCGG	1 cut(s)	275
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	2 cut(s)	218, 257
BsmFI	GGGAC	1 cut(s)	19
Bsp1286I	GDGCHC	2 cut(s)	23, 196
BspACI	CCGC	3 cut(s)	137, 173, 212
BspCNI	CTCAG	1 cut(s)	70
BspLI	GGNNCC	1 cut(s)	193
Bst2UI	CCWGG	1 cut(s)	255
Bst4CI	ACNGT	1 cut(s)	289
Bst6I	CTCTTC	1 cut(s)	9
BstC8I	GCNNGC	1 cut(s)	108
BstDEI	CTNAG	2 cut(s)	30, 57
BstF5I	GGATG	2 cut(s)	199, 271
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 128, 167
BstNI	CCWGG	1 cut(s)	255
BstSCI	CCNGG	2 cut(s)	253, 274
BstSFI	CTRYAG	1 cut(s)	51
BstSLI	GKGCMC	1 cut(s)	23
BstV1I	GCAGC	1 cut(s)	115
BstXI	CCANNNNNNTGG	1 cut(s)	186
BsuI	GTATCC	1 cut(s)	93
BtsCI	GGATG	2 cut(s)	199, 271
Cac8I	GCNNGC	1 cut(s)	108
Cfr13I	GGNCC	1 cut(s)	93
Csp6I	GTAC	1 cut(s)	235
CviJI	RGCY	8 cut(s)	34, 47, 56, 76, 99, 110, 128, 194
CviKI_1	RGCY	8 cut(s)	34, 47, 56, 76, 99, 110, 128, 194
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	2 cut(s)	30, 57
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
Eco24I	GRGCYC	1 cut(s)	196
Eco47I	GGWCC	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	253
EcoT38I	GRGCYC	1 cut(s)	196
FaqI	GGGAC	1 cut(s)	19
Fnu4HI	GCNGC	2 cut(s)	129, 212
FokI	GGATG	2 cut(s)	186, 258
FriOI	GRGCYC	1 cut(s)	196
Fsp4HI	GCNGC	2 cut(s)	129, 212
GluI	GCNGC	2 cut(s)	129, 212
GsaI	CCCAGC	1 cut(s)	199
GsuI	CTGGAG	2 cut(s)	144, 237
HapII	CCGG	1 cut(s)	275
HindIII	AAGCTT	1 cut(s)	45
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	1 cut(s)	156
Hpy188III	TCNNGA	2 cut(s)	59, 86
HpyAV	CCTTC	2 cut(s)	45, 87
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4V	TGCA	1 cut(s)	106
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 128, 167
HpyF3I	CTNAG	2 cut(s)	30, 57
LmnI	GCTCC	3 cut(s)	125, 136, 191
Lsp1109I	GCAGC	1 cut(s)	115
LweI	GCATC	2 cut(s)	198, 208
MaeIII	GTNAC	1 cut(s)	283
MboII	GAAGA	1 cut(s)	26
MhlI	GDGCHC	2 cut(s)	23, 196
MnlI	CCTC	4 cut(s)	10, 37, 163, 261
MslI	CAYNNNNRTG	1 cut(s)	184
MspI	CCGG	1 cut(s)	275
MspR9I	CCNGG	2 cut(s)	255, 276
MvaI	CCWGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	3 cut(s)	53, 128, 167
NciI	CCSGG	1 cut(s)	276
NlaIV	GGNNCC	1 cut(s)	193
NmuCI	GTSAC	1 cut(s)	283
PkrI	GCNGC	2 cut(s)	130, 213
Psp6I	CCWGG	1 cut(s)	253
PspFI	CCCAGC	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	253
PspN4I	GGNNCC	1 cut(s)	193
PspPI	GGNCC	1 cut(s)	93
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
RseI	CAYNNNNRTG	1 cut(s)	184
SatI	GCNGC	2 cut(s)	129, 212
Sau96I	GGNCC	1 cut(s)	93
ScrFI	CCNGG	2 cut(s)	255, 276
SduI	GDGCHC	2 cut(s)	23, 196
SetI	ASST	6 cut(s)	49, 58, 70, 101, 130, 259
SfaNI	GCATC	2 cut(s)	198, 208
SfcI	CTRYAG	1 cut(s)	51
SinI	GGWCC	1 cut(s)	93
SmiMI	CAYNNNNRTG	1 cut(s)	184
SsiI	CCGC	3 cut(s)	137, 173, 212
StyD4I	CCNGG	2 cut(s)	253, 274
TaaI	ACNGT	1 cut(s)	289
TauI	GCSGC	1 cut(s)	214
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	1 cut(s)	128
Tsp45I	GTSAC	1 cut(s)	283
TspGWI	ACGGA	1 cut(s)	222
VpaK11BI	GGWCC	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.