Rh2BG159300
BZIP Family

G-box-binding factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0003368
Physical Location & Seq
Reverse (-)
13727113 .. 13732688
5576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG159300.1

Sequence Viewer

Length: 768 bp
ATGGGGACAGGGGAAGAGGGCACACCCTCTAAGCCTTCCAAACAAGCTTCTACAGCTCAGGAAATACCTACACAGCCTTCGTATCCTGATTGGTCCAGCTCTATGCAGGCTTATTATGGTGCTGGAGCTGCTCCACCGCCCTTTTTCGCTTCCTCTGTTGCTTCACCAGCACCGCACCCATATATGTGGGGTGCCCAGCATCCTATGATGCCTCCTTATGGAACTCCTGTTCCGTACCCTGCTATATATCCTCCAGGTGGAGTTTATGCTCATCCGGGTATGGTCACGACTCCTACTTCAGTACCACCAACAAATCCAGAGTCGGAAGGGAAGGGCGCAGATGGGAAAGAGCGAGCTTCAGCCAAAAAACCCAAGGGAGCTGCAGGAAATACAGTTAAGGCTGGGGAGAGTGGAAAAGCAACTTCTGGTTCTGGAAATGATGGAGCTTCACAAAGTGCTGAAAGTGGCAGCGAGGGTTCATCAGATGGAAGCGAGGAGAATGGTAACCACCAGGAGTATGGTGCAAACAAAAAGGGAAGCTTTGACAAGATGCTTGCAGATGGAGCAAATGCACAAAATAACACAGCTTTAGTGCCTGGGAAGCCTGTAGTTTCTATGCCTGCAACTAGTCTGAATATGGGAATGGACTTGTGGAATGCATCCCCCGCTGGTGCAGGAACTGCAAAAATGAGAGGAAATCAATCTGGAGCCCCATCAGCTGTCGGTGGTGACCATTGGATTCAGGTACAAATTTTTCTCATGTTTTAA

Protein Analysis

255

Amino Acids

25.89

Weight (kDa)

5.71

Isoelectric Point (pI)

44.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFMR PF07777 1 - 94 3e-34 G-box binding protein MFMR
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 191
AciI CCGC 3 cut(s) 137, 173, 666
AcsI RAATTY 1 cut(s) 750
AcuI CTGAAG 2 cut(s) 282, 342
AdeI CACNNNGTG 1 cut(s) 455
AfaI GTAC 3 cut(s) 236, 303, 747
AfiI CCNNNNNNNGG 2 cut(s) 218, 257
AhlI ACTAGT 1 cut(s) 626
AjnI CCWGG 3 cut(s) 253, 510, 595
AloI GAACNNNNNNTCC 4 cut(s) 213, 214, 245, 246
AlwNI CAGNNNCTG 1 cut(s) 680
ApeKI GCWGC 3 cut(s) 128, 380, 468
ApoI RAATTY 1 cut(s) 750
ArsI GACNNNNNNTTYG 2 cut(s) 305, 337
AspLEI GCGC 1 cut(s) 338
AspS9I GGNCC 1 cut(s) 93
AsuC2I CCSGG 1 cut(s) 276
AsuHPI GGTGA 2 cut(s) 156, 740
AvaII GGWCC 1 cut(s) 93
BaeGI GKGCMC 2 cut(s) 23, 196
BaeI ACNNNNGTAYC 2 cut(s) 285, 318
BanI GGYRCC 1 cut(s) 191
BanII GRGCYC 1 cut(s) 712
BbvI GCAGC 3 cut(s) 115, 367, 480
BccI CCATC 5 cut(s) 335, 434, 479, 554, 721
BciT130I CCWGG 3 cut(s) 255, 512, 597
BciVI GTATCC 1 cut(s) 93
BcnI CCSGG 1 cut(s) 276
BcuI ACTAGT 1 cut(s) 626
BfaI CTAG 1 cut(s) 627
BfmI CTRYAG 3 cut(s) 51, 381, 606
BfuI GTATCC 1 cut(s) 93
BisI GCNGC 3 cut(s) 129, 381, 469
BlsI GCNGC 3 cut(s) 130, 382, 470
Bme1390I CCNGG 4 cut(s) 255, 276, 512, 597
Bme18I GGWCC 1 cut(s) 93
BmgT120I GGNCC 1 cut(s) 93
BmiI GGNNCC 2 cut(s) 193, 709
BmrFI CCNGG 4 cut(s) 255, 276, 512, 597
BmsI GCATC 4 cut(s) 198, 208, 540, 668
BpmI CTGGAG 3 cut(s) 144, 237, 726
Bpu10I CCTNAGC 1 cut(s) 57
BpuMI CCSGG 1 cut(s) 276
BsaJI CCNNGG 2 cut(s) 372, 596
Bsc4I CCNNNNNNNGG 2 cut(s) 218, 257
BseBI CCWGG 3 cut(s) 255, 512, 597
BseDI CCNNGG 2 cut(s) 372, 596
BseGI GGATG 3 cut(s) 199, 271, 659
BseLI CCNNNNNNNGG 2 cut(s) 218, 257
BseMII CTCAG 1 cut(s) 71
BseRI GAGGAG 1 cut(s) 509
BseSI GKGCMC 2 cut(s) 23, 196
BseXI GCAGC 3 cut(s) 115, 367, 480
BseYI CCCAGC 2 cut(s) 195, 401
BsgI GTGCAG 1 cut(s) 693
BshNI GGYRCC 1 cut(s) 191
BsiSI CCGG 1 cut(s) 275
BslFI GGGAC 1 cut(s) 19
BslI CCNNNNNNNGG 2 cut(s) 218, 257
BsmFI GGGAC 1 cut(s) 19
BsmI GAATGC 1 cut(s) 661
Bsp1286I GDGCHC 3 cut(s) 23, 196, 712
BspACI CCGC 3 cut(s) 137, 173, 666
BspCNI CTCAG 1 cut(s) 70
BspLI GGNNCC 2 cut(s) 193, 709
BspMAI CTGCAG 1 cut(s) 385
BspT107I GGYRCC 1 cut(s) 191
BssECI CCNNGG 2 cut(s) 372, 596
BssT1I CCWWGG 1 cut(s) 372
Bst2UI CCWGG 3 cut(s) 255, 512, 597
Bst4CI ACNGT 1 cut(s) 394
Bst6I CTCTTC 1 cut(s) 9
BstAPI GCANNNNNTGC 1 cut(s) 680
BstC8I GCNNGC 4 cut(s) 108, 354, 555, 621
BstDEI CTNAG 2 cut(s) 30, 57
BstEII GGTNACC 2 cut(s) 503, 728
BstF5I GGATG 3 cut(s) 199, 271, 659
BstHHI GCGC 1 cut(s) 338
BstMWI GCNNNNNNNGC 8 cut(s) 53, 128, 167, 563, 601, 665, 680, 716
BstNI CCWGG 3 cut(s) 255, 512, 597
BstPI GGTNACC 2 cut(s) 503, 728
BstSCI CCNGG 4 cut(s) 253, 274, 510, 595
BstSFI CTRYAG 3 cut(s) 51, 381, 606
BstSLI GKGCMC 2 cut(s) 23, 196
BstV1I GCAGC 3 cut(s) 115, 367, 480
BstXI CCANNNNNNTGG 2 cut(s) 186, 518
BsuI GTATCC 1 cut(s) 93
BtsCI GGATG 3 cut(s) 199, 271, 659
Cac8I GCNNGC 4 cut(s) 108, 354, 555, 621
CaiI CAGNNNCTG 1 cut(s) 680
CfoI GCGC 1 cut(s) 338
Cfr13I GGNCC 1 cut(s) 93
Csp6I GTAC 3 cut(s) 235, 302, 746
CviAII CATG 1 cut(s) 760
CviQI GTAC 3 cut(s) 235, 302, 746
DdeI CTNAG 2 cut(s) 30, 57
DraIII CACNNNGTG 1 cut(s) 455
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
Eco130I CCWWGG 1 cut(s) 372
Eco24I GRGCYC 1 cut(s) 712
Eco47I GGWCC 1 cut(s) 93
Eco57I CTGAAG 2 cut(s) 282, 342
Eco91I GGTNACC 2 cut(s) 503, 728
EcoO65I GGTNACC 2 cut(s) 503, 728
EcoRII CCWGG 3 cut(s) 253, 510, 595
EcoT14I CCWWGG 1 cut(s) 372
EcoT22I ATGCAT 1 cut(s) 661
EcoT38I GRGCYC 1 cut(s) 712
ErhI CCWWGG 1 cut(s) 372
FaeI CATG 1 cut(s) 763
FalI AAGNNNNNCTT 2 cut(s) 524, 556
FaqI GGGAC 1 cut(s) 19
FatI CATG 1 cut(s) 759
FauI CCCGC 1 cut(s) 673
Fnu4HI GCNGC 3 cut(s) 129, 381, 469
FokI GGATG 3 cut(s) 186, 258, 646
FriOI GRGCYC 1 cut(s) 712
Fsp4HI GCNGC 3 cut(s) 129, 381, 469
FspBI CTAG 1 cut(s) 627
GlaI GCGC 1 cut(s) 337
GluI GCNGC 3 cut(s) 129, 381, 469
GsaI CCCAGC 2 cut(s) 199, 405
GsuI CTGGAG 3 cut(s) 144, 237, 726
HapII CCGG 1 cut(s) 275
HhaI GCGC 1 cut(s) 338
Hin1II CATG 1 cut(s) 763
Hin6I GCGC 1 cut(s) 336
HinP1I GCGC 1 cut(s) 336
HindIII AAGCTT 2 cut(s) 45, 538
HinfI GANTC 3 cut(s) 289, 320, 739
HpaII CCGG 1 cut(s) 275
HphI GGTGA 2 cut(s) 156, 740
Hpy188I TCNGA 3 cut(s) 325, 484, 633
Hpy188III TCNNGA 6 cut(s) 59, 86, 286, 317, 432, 705
HpyAV CCTTC 4 cut(s) 45, 87, 320, 325
HpyCH4III ACNGT 1 cut(s) 394
HpyCH4V TGCA 9 cut(s) 106, 383, 524, 557, 572, 623, 659, 674, 683
HpyF10VI GCNNNNNNNGC 8 cut(s) 53, 128, 167, 563, 601, 665, 680, 716
HpyF3I CTNAG 2 cut(s) 30, 57
Hsp92II CATG 1 cut(s) 763
HspAI GCGC 1 cut(s) 336
LmnI GCTCC 6 cut(s) 125, 136, 377, 443, 563, 707
Lsp1109I GCAGC 3 cut(s) 115, 367, 480
LweI GCATC 4 cut(s) 198, 208, 540, 668
MaeI CTAG 1 cut(s) 627
MaeIII GTNAC 3 cut(s) 283, 503, 728
MboII GAAGA 1 cut(s) 26
MhlI GDGCHC 3 cut(s) 23, 196, 712
MluCI AATT 1 cut(s) 750
MlyI GAGTC 2 cut(s) 283, 329
MmeI TCCRAC 1 cut(s) 303
MnlI CCTC 8 cut(s) 10, 37, 163, 222, 261, 466, 487, 686
Mph1103I ATGCAT 1 cut(s) 661
MseI TTAA 2 cut(s) 396, 766
MslI CAYNNNNRTG 1 cut(s) 184
MspA1I CMGCKG 2 cut(s) 668, 719
MspI CCGG 1 cut(s) 275
MspR9I CCNGG 4 cut(s) 255, 276, 512, 597
Mva1269I GAATGC 1 cut(s) 661
MvaI CCWGG 3 cut(s) 255, 512, 597
MwoI GCNNNNNNNGC 8 cut(s) 53, 128, 167, 563, 601, 665, 680, 716
NciI CCSGG 1 cut(s) 276
NlaIII CATG 1 cut(s) 763
NlaIV GGNNCC 2 cut(s) 193, 709
NmuCI GTSAC 2 cut(s) 283, 728
NsiI ATGCAT 1 cut(s) 661
PctI GAATGC 1 cut(s) 661
PfeI GAWTC 1 cut(s) 739
PkrI GCNGC 3 cut(s) 130, 382, 470
PleI GAGTC 2 cut(s) 283, 328
PpsI GAGTC 2 cut(s) 283, 328
Psp6I CCWGG 3 cut(s) 253, 510, 595
PspEI GGTNACC 2 cut(s) 503, 728
PspFI CCCAGC 2 cut(s) 195, 401
PspGI CCWGG 3 cut(s) 253, 510, 595
PspN4I GGNNCC 2 cut(s) 193, 709
PspPI GGNCC 1 cut(s) 93
PstI CTGCAG 1 cut(s) 385
PstNI CAGNNNCTG 1 cut(s) 680
PvuII CAGCTG 1 cut(s) 719
RsaI GTAC 3 cut(s) 236, 303, 747
RsaNI GTAC 3 cut(s) 235, 302, 746
RseI CAYNNNNRTG 1 cut(s) 184
SaqAI TTAA 2 cut(s) 396, 766
SatI GCNGC 3 cut(s) 129, 381, 469
Sau96I GGNCC 1 cut(s) 93
SchI GAGTC 2 cut(s) 283, 329
ScrFI CCNGG 4 cut(s) 255, 276, 512, 597
SduI GDGCHC 3 cut(s) 23, 196, 712
SfaNI GCATC 4 cut(s) 198, 208, 540, 668
SfcI CTRYAG 3 cut(s) 51, 381, 606
SinI GGWCC 1 cut(s) 93
SmiMI CAYNNNNRTG 1 cut(s) 184
SpeI ACTAGT 1 cut(s) 626
Sse9I AATT 1 cut(s) 750
SsiI CCGC 3 cut(s) 137, 173, 666
SspMI CTAG 1 cut(s) 627
StyD4I CCNGG 4 cut(s) 253, 274, 510, 595
StyI CCWWGG 1 cut(s) 372
TaaI ACNGT 1 cut(s) 394
TasI AATT 1 cut(s) 750
TfiI GAWTC 1 cut(s) 739
Tru1I TTAA 2 cut(s) 396, 766
Tru9I TTAA 2 cut(s) 396, 766
TseFI GTSAC 2 cut(s) 283, 728
TseI GCWGC 3 cut(s) 128, 380, 468
Tsp45I GTSAC 2 cut(s) 283, 728
TspDTI ATGAA 1 cut(s) 468
TspGWI ACGGA 1 cut(s) 222
VpaK11BI GGWCC 1 cut(s) 93
XapI RAATTY 1 cut(s) 750
XcmI CCANNNNNNNNNTGG 1 cut(s) 515
XspI CTAG 1 cut(s) 627
Zsp2I ATGCAT 1 cut(s) 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.