Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003368

Physical Location & Seq

Genomic Coordinates Reverse (-)

22910724 .. 22914279

Gene Structure 3556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1266700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGGGACAGGGGAAGAGGGTACTCCTTCTAAGCCTTCCAAACAAGCTTCTACACCTCAGGAATTACCAACAACACCTTCATATCCCGATTGGTCCAGCTCTATGCAGGCTTATTATGGTCCTGGAGGTACTCCGCCTCCCTTTTTCGCCTCTACTGTTGCTTCCTCAACTCCACACCCCTATATGTGGGGAGCCCAGCATCCTATGATGCCGCCATATGGAACTCCAGTTCCATATCCGGCCATGTATCCTCCAGGTGGAGTTTATGCTCATCCCAGTATGGTGATGACCCCAGGCGCACCACAACCAACCCCAGAGTTCGAAGGGAAGGGTCCTGACGGGAAAGAGCGGGCTTCAACCAAAAAACCCAAGGGAACTGCAGGAAATGCAGGTTTGGCTGGTGGCAAGGTTGTGGAGAGTGGAAAAGCAACTTCAGGTTCAGGAAATGATGGTGCTTCACAAAGTGGTGAAAGTGGTAGCGAGGGTTCATCGGATGGAAGCGATGATAATGCTAACAATCAGGAGTATGGTGCAAACAAGAAGGGAAGCTTTGACAAGATGCTTGCGGATGGGGCAAATGCACAAAATAGCACCGGGACACTTGTTCAGGCTTCAGTGCCTGGGAAGCCAGTCTCTATGCCTGGAACTAATCTGAATATCGGAATGGATTTATGGAATGCATCCCCTGCTGGTGCTGGAGCTGGAGCTGCAAAAGTAAGAGGAAATCCATCAGGTCCTCCTTCAGCTGGTGGTGCCGAGCATTGGATTCAAGATGAACGTGAACTGAAAAGGCAGAAAAGAAAGCAATCAAATAGGGAGTCAGCTAGGAGGTCAAGATTACGGAAGCAGGCAGAGTGTGAAGAGCTACAAGCAAGGGTAGAGACTTTGAGCAATGAGAATCATAGCCTCAGAGAAGAGCTGCATAGGCTTTCTGAGGAATGCGAGAAACTGACATCTGAGAATGCTAATATAAAGGAAGAACTGACACGGGTGTGCGGACCCGATTTAGTAGCAAACCTTGAGCAGCAGCCTGGTGGTGGTGAGGGCAACAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

352

Amino Acids

36.64

Weight (kDa)

5.66

Isoelectric Point (pI)

52.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFMR	PF07777	1 - 94	3.4e-34	G-box binding protein MFMR
MFMR_assoc	PF16596	116 - 228	5.8e-10	Disordered region downstream of MFMR
bZIP_1	PF00170	259 - 321	4.4e-22	bZIP transcription factor
bZIP_2	PF07716	261 - 312	3.9e-08	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36730 AT4G36730
fragaria_vesca	FvH4_1g13880 FvH4_1g13880 FvH4_1g13880 FvH4_1g13880 FvH4_1g13880
malus_domestica	MD15G1266700.v1.1
prunus_persica	Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1
pyrus_communis	pycom02g11970 pycom15g23210
rosa_chinensis	RchiOBHm_Chr2g0102191
rosa_laevigata	RLG00000017087 RLG00000017137
rosa_multiflora	Rmu_co8040408.1_g000001 Rmu_co8264951.1_g000001 Rmu_sc0010937.1_g000010 Rmu_sc0011183.1_g000011 Rmu_sc0020365.1_g000005
rosa_roxburghii	Rroxscaffold_2G00140700 Rroxscaffold_2G00140710 Rroxscaffold_2G00141220
rosa_rugosa	Rorug02G0105200 Rorug02G0105300 Rorug02G0105300 Rorug02G0105300
rosa_samantha	Rh2AG153400 Rh2BG159300 Rh2CG158800 Rh2DG159000
rosa_wichuraiana	Rw2G011980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	380
AccB1I	GGYRCC	1 cut(s)	752
AccBSI	CCGCTC	1 cut(s)	349
AciI	CCGC	5 cut(s)	134, 212, 349, 566, 996
AcoI	YGGCCR	1 cut(s)	240
AcuI	CTGAAG	3 cut(s)	417, 597, 726
AdeI	CACNNNGTG	1 cut(s)	464
AfaI	GTAC	2 cut(s)	22, 130
AfiI	CCNNNNNNNGG	6 cut(s)	186, 218, 257, 746, 762, 1037
AgsI	TTSAA	2 cut(s)	357, 770
AjnI	CCWGG	6 cut(s)	121, 253, 292, 619, 640, 1030
AjuI	GAANNNNNNNTTGG	2 cut(s)	61, 93
AleI	CACNNNNGTG	1 cut(s)	991
AloI	GAACNNNNNNTCC	4 cut(s)	213, 214, 245, 246
Alw26I	GTCTC	2 cut(s)	637, 875
AlwNI	CAGNNNCTG	1 cut(s)	620
AoxI	GGCC	1 cut(s)	240
ApeKI	GCWGC	4 cut(s)	707, 919, 1024, 1027
ArsI	GACNNNNNNTTYG	2 cut(s)	803, 835
AspLEI	GCGC	1 cut(s)	299
AspS9I	GGNCC	5 cut(s)	93, 119, 332, 734, 998
AsuC2I	CCSGG	1 cut(s)	595
AsuHPI	GGTGA	3 cut(s)	295, 479, 1052
AsuII	TTCGAA	1 cut(s)	321
AvaII	GGWCC	5 cut(s)	93, 119, 332, 734, 998
AxyI	CCTNAGG	1 cut(s)	57
BanI	GGYRCC	1 cut(s)	752
BanII	GRGCYC	1 cut(s)	196
BbvI	GCAGC	4 cut(s)	694, 906, 1036, 1039
BccI	CCATC	4 cut(s)	443, 488, 563, 736
BcgI	CGANNNNNNTGC	2 cut(s)	491, 525
BciT130I	CCWGG	6 cut(s)	123, 255, 294, 621, 642, 1032
BciVI	GTATCC	1 cut(s)	258
BcnI	CCSGG	1 cut(s)	595
BcoDI	GTCTC	2 cut(s)	637, 875
BfaI	CTAG	1 cut(s)	825
BfmI	CTRYAG	1 cut(s)	378
BfuAI	ACCTGC	1 cut(s)	380
BfuI	GTATCC	1 cut(s)	258
BisI	GCNGC	5 cut(s)	212, 708, 920, 1025, 1028
BlsI	GCNGC	5 cut(s)	213, 709, 921, 1026, 1029
Bme1390I	CCNGG	7 cut(s)	123, 255, 294, 595, 621, 642, 1032
Bme18I	GGWCC	5 cut(s)	93, 119, 332, 734, 998
BmgT120I	GGNCC	5 cut(s)	93, 119, 332, 734, 998
BmiI	GGNNCC	4 cut(s)	193, 333, 754, 1000
BmrFI	CCNGG	7 cut(s)	123, 255, 294, 595, 621, 642, 1032
BmrI	ACTGGG	1 cut(s)	270
BmsI	GCATC	4 cut(s)	198, 208, 549, 689
BmuI	ACTGGG	1 cut(s)	270
BpmI	CTGGAG	5 cut(s)	144, 210, 237, 717, 723
Bpu14I	TTCGAA	1 cut(s)	321
BpuEI	CTTGAG	1 cut(s)	1040
BpuMI	CCSGG	1 cut(s)	595
BsaJI	CCNNGG	3 cut(s)	292, 369, 620
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bsc4I	CCNNNNNNNGG	6 cut(s)	186, 218, 257, 746, 762, 1037
Bse1I	ACTGG	3 cut(s)	227, 276, 629
Bse21I	CCTNAGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	898
BseBI	CCWGG	6 cut(s)	123, 255, 294, 621, 642, 1032
BseDI	CCNNGG	3 cut(s)	292, 369, 620
BseGI	GGATG	5 cut(s)	199, 271, 499, 574, 680
BseLI	CCNNNNNNNGG	6 cut(s)	186, 218, 257, 746, 762, 1037
BseMI	GCAATG	1 cut(s)	898
BseMII	CTCAG	4 cut(s)	71, 922, 924, 948
BseNI	ACTGG	3 cut(s)	227, 276, 629
BseXI	GCAGC	4 cut(s)	694, 906, 1036, 1039
BseYI	CCCAGC	1 cut(s)	195
BshFI	GGCC	1 cut(s)	242
BshNI	GGYRCC	1 cut(s)	752
BsiSI	CCGG	2 cut(s)	239, 594
BslFI	GGGAC	2 cut(s)	19, 610
BslI	CCNNNNNNNGG	6 cut(s)	186, 218, 257, 746, 762, 1037
BsmAI	GTCTC	2 cut(s)	637, 875
BsmFI	GGGAC	2 cut(s)	19, 610
BsmI	GAATGC	3 cut(s)	682, 944, 967
BsnI	GGCC	1 cut(s)	242
Bsp119I	TTCGAA	1 cut(s)	321
Bsp1286I	GDGCHC	1 cut(s)	196
BspACI	CCGC	5 cut(s)	134, 212, 349, 566, 996
BspANI	GGCC	1 cut(s)	242
BspCNI	CTCAG	4 cut(s)	70, 921, 925, 949
BspLI	GGNNCC	4 cut(s)	193, 333, 754, 1000
BspMAI	CTGCAG	1 cut(s)	382
BspMI	ACCTGC	1 cut(s)	380
BspQI	GCTCTTC	2 cut(s)	855, 909
BspT104I	TTCGAA	1 cut(s)	321
BspT107I	GGYRCC	1 cut(s)	752
BsrBI	CCGCTC	1 cut(s)	349
BsrDI	GCAATG	1 cut(s)	898
BsrI	ACTGG	3 cut(s)	227, 276, 629
BssECI	CCNNGG	3 cut(s)	292, 369, 620
BssT1I	CCWWGG	1 cut(s)	369
Bst2UI	CCWGG	6 cut(s)	123, 255, 294, 621, 642, 1032
Bst4CI	ACNGT	1 cut(s)	157
Bst6I	CTCTTC	3 cut(s)	9, 855, 909
BstAPI	GCANNNNNTGC	2 cut(s)	386, 686
BstBI	TTCGAA	1 cut(s)	321
BstC8I	GCNNGC	4 cut(s)	108, 351, 564, 849
BstDEI	CTNAG	5 cut(s)	30, 57, 908, 933, 957
BstF5I	GGATG	5 cut(s)	199, 271, 499, 574, 680
BstHHI	GCGC	1 cut(s)	299
BstMAI	GTCTC	2 cut(s)	637, 875
BstMWI	GCNNNNNNNGC	8 cut(s)	386, 395, 572, 625, 686, 707, 752, 925
BstNI	CCWGG	6 cut(s)	123, 255, 294, 621, 642, 1032
BstSCI	CCNGG	7 cut(s)	121, 253, 292, 593, 619, 640, 1030
BstSFI	CTRYAG	1 cut(s)	378
BstV1I	GCAGC	4 cut(s)	694, 906, 1036, 1039
Bsu36I	CCTNAGG	1 cut(s)	57
BsuI	GTATCC	1 cut(s)	258
BsuRI	GGCC	1 cut(s)	242
BtgZI	GCGATG	1 cut(s)	516
BtsCI	GGATG	5 cut(s)	199, 271, 499, 574, 680
BtsIMutI	CAGTG	1 cut(s)	621
BveI	ACCTGC	1 cut(s)	380
Cac8I	GCNNGC	4 cut(s)	108, 351, 564, 849
CaiI	CAGNNNCTG	1 cut(s)	620
CfoI	GCGC	1 cut(s)	299
Cfr13I	GGNCC	5 cut(s)	93, 119, 332, 734, 998
Csp6I	GTAC	2 cut(s)	21, 129
CviAII	CATG	1 cut(s)	244
CviQI	GTAC	2 cut(s)	21, 129
DdeI	CTNAG	5 cut(s)	30, 57, 908, 933, 957
DraIII	CACNNNGTG	1 cut(s)	464
EaeI	YGGCCR	1 cut(s)	240
Eam1104I	CTCTTC	3 cut(s)	9, 855, 909
EarI	CTCTTC	3 cut(s)	9, 855, 909
EciI	GGCGGA	1 cut(s)	123
Eco130I	CCWWGG	1 cut(s)	369
Eco24I	GRGCYC	1 cut(s)	196
Eco47I	GGWCC	5 cut(s)	93, 119, 332, 734, 998
Eco57I	CTGAAG	3 cut(s)	417, 597, 726
Eco81I	CCTNAGG	1 cut(s)	57
EcoO109I	RGGNCCY	2 cut(s)	332, 734
EcoRII	CCWGG	6 cut(s)	121, 253, 292, 619, 640, 1030
EcoT14I	CCWWGG	1 cut(s)	369
EcoT22I	ATGCAT	1 cut(s)	682
EcoT38I	GRGCYC	1 cut(s)	196
ErhI	CCWWGG	1 cut(s)	369
FaeI	CATG	1 cut(s)	247
FalI	AAGNNNNNCTT	2 cut(s)	533, 565
FaqI	GGGAC	2 cut(s)	19, 610
FatI	CATG	1 cut(s)	243
FauI	CCCGC	1 cut(s)	342
FauNDI	CATATG	1 cut(s)	217
Fnu4HI	GCNGC	5 cut(s)	212, 708, 920, 1025, 1028
FokI	GGATG	5 cut(s)	186, 258, 506, 581, 667
FriOI	GRGCYC	1 cut(s)	196
Fsp4HI	GCNGC	5 cut(s)	212, 708, 920, 1025, 1028
FspBI	CTAG	1 cut(s)	825
GlaI	GCGC	1 cut(s)	298
GluI	GCNGC	5 cut(s)	212, 708, 920, 1025, 1028
GsaI	CCCAGC	1 cut(s)	199
GsuI	CTGGAG	5 cut(s)	144, 210, 237, 717, 723
HaeIII	GGCC	1 cut(s)	242
HapII	CCGG	2 cut(s)	239, 594
HhaI	GCGC	1 cut(s)	299
Hin1II	CATG	1 cut(s)	247
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HindIII	AAGCTT	2 cut(s)	45, 547
HinfI	GANTC	3 cut(s)	766, 818, 898
HpaII	CCGG	2 cut(s)	239, 594
HphI	GGTGA	3 cut(s)	295, 479, 1052
Hpy166II	GTNNAC	1 cut(s)	782
Hpy188I	TCNGA	6 cut(s)	493, 654, 662, 911, 934, 958
Hpy188III	TCNNGA	7 cut(s)	59, 86, 335, 441, 521, 770, 834
Hpy8I	GTNNAC	1 cut(s)	782
HpyAV	CCTTC	7 cut(s)	36, 45, 87, 317, 322, 535, 750
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4IV	ACGT	1 cut(s)	778
HpyCH4V	TGCA	8 cut(s)	106, 380, 389, 533, 581, 680, 710, 922
HpyF10VI	GCNNNNNNNGC	8 cut(s)	386, 395, 572, 625, 686, 707, 752, 925
HpyF3I	CTNAG	5 cut(s)	30, 57, 908, 933, 957
HpySE526I	ACGT	1 cut(s)	778
Hsp92II	CATG	1 cut(s)	247
HspAI	GCGC	1 cut(s)	297
LguI	GCTCTTC	2 cut(s)	855, 909
LmnI	GCTCC	3 cut(s)	191, 698, 704
Lsp1109I	GCAGC	4 cut(s)	694, 906, 1036, 1039
LweI	GCATC	4 cut(s)	198, 208, 549, 689
MaeI	CTAG	1 cut(s)	825
MaeII	ACGT	1 cut(s)	778
MbiI	CCGCTC	1 cut(s)	349
MboII	GAAGA	4 cut(s)	26, 872, 926, 989
MhlI	GDGCHC	1 cut(s)	196
MluCI	AATT	1 cut(s)	62
MlyI	GAGTC	1 cut(s)	827
Mph1103I	ATGCAT	1 cut(s)	682
MslI	CAYNNNNRTG	1 cut(s)	991
MspA1I	CMGCKG	2 cut(s)	746, 1053
MspI	CCGG	2 cut(s)	239, 594
MspR9I	CCNGG	7 cut(s)	123, 255, 294, 595, 621, 642, 1032
Mva1269I	GAATGC	3 cut(s)	682, 944, 967
MvaI	CCWGG	6 cut(s)	123, 255, 294, 621, 642, 1032
MwoI	GCNNNNNNNGC	8 cut(s)	386, 395, 572, 625, 686, 707, 752, 925
NciI	CCSGG	1 cut(s)	595
NdeI	CATATG	1 cut(s)	217
NlaIII	CATG	1 cut(s)	247
NlaIV	GGNNCC	4 cut(s)	193, 333, 754, 1000
NmeAIII	GCCGAG	1 cut(s)	781
NsiI	ATGCAT	1 cut(s)	682
NspV	TTCGAA	1 cut(s)	321
OliI	CACNNNNGTG	1 cut(s)	991
PciSI	GCTCTTC	2 cut(s)	855, 909
PctI	GAATGC	3 cut(s)	682, 944, 967
PfeI	GAWTC	2 cut(s)	766, 898
PfoI	TCCNGGA	1 cut(s)	121
PkrI	GCNGC	5 cut(s)	213, 709, 921, 1026, 1029
PleI	GAGTC	1 cut(s)	826
PpsI	GAGTC	1 cut(s)	826
PpuMI	RGGWCCY	2 cut(s)	332, 734
Psp5II	RGGWCCY	2 cut(s)	332, 734
Psp6I	CCWGG	6 cut(s)	121, 253, 292, 619, 640, 1030
PspFI	CCCAGC	1 cut(s)	195
PspGI	CCWGG	6 cut(s)	121, 253, 292, 619, 640, 1030
PspN4I	GGNNCC	4 cut(s)	193, 333, 754, 1000
PspPI	GGNCC	5 cut(s)	93, 119, 332, 734, 998
PspPPI	RGGWCCY	2 cut(s)	332, 734
PsrI	GAACNNNNNNTAC	2 cut(s)	469, 501
PstI	CTGCAG	1 cut(s)	382
PstNI	CAGNNNCTG	1 cut(s)	620
PvuII	CAGCTG	2 cut(s)	746, 1053
RsaI	GTAC	2 cut(s)	22, 130
RsaNI	GTAC	2 cut(s)	21, 129
RseI	CAYNNNNRTG	1 cut(s)	991
SapI	GCTCTTC	2 cut(s)	855, 909
SatI	GCNGC	5 cut(s)	212, 708, 920, 1025, 1028
Sau96I	GGNCC	5 cut(s)	93, 119, 332, 734, 998
SchI	GAGTC	1 cut(s)	827
ScrFI	CCNGG	7 cut(s)	123, 255, 294, 595, 621, 642, 1032
SduI	GDGCHC	1 cut(s)	196
SfaNI	GCATC	4 cut(s)	198, 208, 549, 689
SfcI	CTRYAG	1 cut(s)	378
SfuI	TTCGAA	1 cut(s)	321
SinI	GGWCC	5 cut(s)	93, 119, 332, 734, 998
SmiMI	CAYNNNNRTG	1 cut(s)	991
SmlI	CTYRAG	1 cut(s)	1019
SmoI	CTYRAG	1 cut(s)	1019
Sse9I	AATT	1 cut(s)	62
SsiI	CCGC	5 cut(s)	134, 212, 349, 566, 996
SspMI	CTAG	1 cut(s)	825
StyD4I	CCNGG	7 cut(s)	121, 253, 292, 593, 619, 640, 1030
StyI	CCWWGG	1 cut(s)	369
TaaI	ACNGT	1 cut(s)	157
TaiI	ACGT	1 cut(s)	781
TaqI	TCGA	1 cut(s)	321
TasI	AATT	1 cut(s)	62
TauI	GCSGC	1 cut(s)	214
TfiI	GAWTC	2 cut(s)	766, 898
TscAI	CASTG	1 cut(s)	621
TseI	GCWGC	4 cut(s)	707, 919, 1024, 1027
TspDTI	ATGAA	3 cut(s)	69, 477, 789
TspGWI	ACGGA	1 cut(s)	856
TspRI	CASTG	1 cut(s)	621
VpaK11BI	GGWCC	5 cut(s)	93, 119, 332, 734, 998
XspI	CTAG	1 cut(s)	825
Zsp2I	ATGCAT	1 cut(s)	682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.