Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003368

Physical Location & Seq

Genomic Coordinates Reverse (-)

12721734 .. 12724085

Gene Structure 2352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017087

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGACGAAAACACATTCTGGATCGATATGGTTATTATGGTGCTGGAGCTGCTCCACCGCCCTTTTTCGCCTCCTCTGTTGCTTCACCAGCGCTGCGTGGGGAGCCCAGCATCCTATGATGCCGCCGCCTTATGGAACTTCTGTTCCGTACCCTGCTATGTATCCTCCAGGTGGAGTTTATGCTCATCCGAGTATGGTCACGACTCCTACTTCAGTACCACCAACAAATCCAGAGTCGGAAGGGAAGGGCGCAGATGGGAAAGAGCGGGCTTCAGCCAAAAAACCCAAGGGAGTTGCAGGAAATACAGTTAAGGCTGGGGAGAGTGGAAAAGCAACTTCTGGTTCTGGAAATGATGGAGCTTCACAAAGTGCTGAAAGTGGCAGCGAGGGTTCATCAGATGGAAGCGAGGAGAATGGTAACCACCAGCCCATCAGGTATGAGTATGGTGCAAACAAGAAGGGAAGCTTTGACAAGATGCTTGCAGATGAAGCAAATGCACAAAATAACACAGCCTTAGTGCCTGGGAAGCCTGTAGTTTCTGTGCCTGCAACTAGTCTGAATATGGGAATGGACTTGTGGAATGCATCCCCCGCTGGTGCTGGAACTGCAAAAATGAGAGGAAATCAATCTGGAGCCCCATCAGCTGTCGGTGGTGACCATTGGATTCAGGATGAATGGGAACTGAAAAGACAGAAAAGGATGCAGTCAAATAGGAATAGGGAGTCTGCTAGGAGGTCAAGATTGCGGAAGCAGGCGGAGTGTGGAGAGCTACAAAAAAGTTTTACAGGGACTGACCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

267

Amino Acids

28.15

Weight (kDa)

8.92

Isoelectric Point (pI)

47.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFMR	PF07777	33 - 65	4.6e-09	G-box binding protein MFMR
bZIP_1	PF00170	227 - 259	1.9e-08	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36730 AT4G36730
fragaria_vesca	FvH4_1g13880 FvH4_1g13880 FvH4_1g13880 FvH4_1g13880 FvH4_1g13880
malus_domestica	MD15G1266700.v1.1
prunus_persica	Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1
pyrus_communis	pycom02g11970 pycom15g23210
rosa_chinensis	RchiOBHm_Chr2g0102191
rosa_laevigata	RLG00000017087 RLG00000017137
rosa_multiflora	Rmu_co8040408.1_g000001 Rmu_co8264951.1_g000001 Rmu_sc0010937.1_g000010 Rmu_sc0011183.1_g000011 Rmu_sc0020365.1_g000005
rosa_roxburghii	Rroxscaffold_2G00140700 Rroxscaffold_2G00140710 Rroxscaffold_2G00141220
rosa_rugosa	Rorug02G0105200 Rorug02G0105300 Rorug02G0105300 Rorug02G0105300
rosa_samantha	Rh2AG153400 Rh2BG159300 Rh2CG158800 Rh2DG159000
rosa_wichuraiana	Rw2G011980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	265
AciI	CCGC	7 cut(s)	57, 122, 125, 265, 591, 745, 755
AclWI	GGATC	1 cut(s)	28
AcuI	CTGAAG	2 cut(s)	195, 255
AdeI	CACNNNGTG	1 cut(s)	368
AfaI	GTAC	2 cut(s)	149, 216
AfeI	AGCGCT	1 cut(s)	91
AfiI	CCNNNNNNNGG	2 cut(s)	131, 170
AhlI	ACTAGT	1 cut(s)	551
AjnI	CCWGG	2 cut(s)	166, 520
AloI	GAACNNNNNNTCC	4 cut(s)	126, 127, 158, 159
AluBI	AGCT	5 cut(s)	48, 359, 465, 644, 769
AluI	AGCT	5 cut(s)	48, 359, 465, 644, 769
AlwI	GGATC	1 cut(s)	28
AlwNI	CAGNNNCTG	1 cut(s)	791
Aor51HI	AGCGCT	1 cut(s)	91
ApeKI	GCWGC	3 cut(s)	48, 92, 381
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
AspLEI	GCGC	2 cut(s)	92, 251
AsuHPI	GGTGA	2 cut(s)	76, 665
BaeI	ACNNNNGTAYC	2 cut(s)	198, 231
BanII	GRGCYC	2 cut(s)	106, 637
BbvI	GCAGC	3 cut(s)	35, 79, 393
BccI	CCATC	5 cut(s)	248, 347, 392, 437, 646
BciT130I	CCWGG	2 cut(s)	168, 522
BciVI	GTATCC	1 cut(s)	171
BcuI	ACTAGT	1 cut(s)	551
BfaI	CTAG	2 cut(s)	552, 729
BfmI	CTRYAG	1 cut(s)	531
BfoI	RGCGCY	1 cut(s)	93
BfuI	GTATCC	1 cut(s)	171
BisI	GCNGC	5 cut(s)	49, 93, 122, 125, 382
BlsI	GCNGC	5 cut(s)	50, 94, 123, 126, 383
Bme1390I	CCNGG	2 cut(s)	168, 522
BmiI	GGNNCC	2 cut(s)	103, 634
BmrFI	CCNGG	2 cut(s)	168, 522
BmsI	GCATC	5 cut(s)	108, 118, 465, 593, 690
BpmI	CTGGAG	3 cut(s)	64, 150, 651
Bsa29I	ATCGAT	1 cut(s)	23
BsaJI	CCNNGG	2 cut(s)	285, 521
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 170
BseBI	CCWGG	2 cut(s)	168, 522
BseCI	ATCGAT	1 cut(s)	23
BseDI	CCNNGG	2 cut(s)	285, 521
BseGI	GGATG	5 cut(s)	109, 184, 584, 676, 705
BseLI	CCNNNNNNNGG	2 cut(s)	131, 170
BseRI	GAGGAG	2 cut(s)	62, 422
BseXI	GCAGC	3 cut(s)	35, 79, 393
BseYI	CCCAGC	2 cut(s)	105, 314
BshVI	ATCGAT	1 cut(s)	23
BslI	CCNNNNNNNGG	2 cut(s)	131, 170
BsmI	GAATGC	1 cut(s)	586
Bsp1286I	GDGCHC	2 cut(s)	106, 637
Bsp143I	GATC	1 cut(s)	20
BspACI	CCGC	7 cut(s)	57, 122, 125, 265, 591, 745, 755
BspDI	ATCGAT	1 cut(s)	23
BspLI	GGNNCC	2 cut(s)	103, 634
BspPI	GGATC	1 cut(s)	28
BsrBI	CCGCTC	1 cut(s)	265
BssECI	CCNNGG	2 cut(s)	285, 521
BssMI	GATC	1 cut(s)	20
BssT1I	CCWWGG	1 cut(s)	285
Bst2UI	CCWGG	2 cut(s)	168, 522
Bst4CI	ACNGT	1 cut(s)	307
BstC8I	GCNNGC	4 cut(s)	267, 480, 546, 753
BstDEI	CTNAG	1 cut(s)	514
BstEII	GGTNACC	2 cut(s)	416, 653
BstF5I	GGATG	5 cut(s)	109, 184, 584, 676, 705
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	2 cut(s)	92, 251
BstKTI	GATC	1 cut(s)	23
BstMBI	GATC	1 cut(s)	20
BstMWI	GCNNNNNNNGC	8 cut(s)	48, 87, 101, 488, 526, 590, 605, 641
BstNI	CCWGG	2 cut(s)	168, 522
BstPI	GGTNACC	2 cut(s)	416, 653
BstSCI	CCNGG	2 cut(s)	166, 520
BstSFI	CTRYAG	1 cut(s)	531
BstV1I	GCAGC	3 cut(s)	35, 79, 393
Bsu15I	ATCGAT	1 cut(s)	23
BsuI	GTATCC	1 cut(s)	171
BsuTUI	ATCGAT	1 cut(s)	23
BtsCI	GGATG	5 cut(s)	109, 184, 584, 676, 705
Cac8I	GCNNGC	4 cut(s)	267, 480, 546, 753
CaiI	CAGNNNCTG	1 cut(s)	791
CfoI	GCGC	2 cut(s)	92, 251
ClaI	ATCGAT	1 cut(s)	23
Csp6I	GTAC	2 cut(s)	148, 215
CviQI	GTAC	2 cut(s)	148, 215
DdeI	CTNAG	1 cut(s)	514
DpnI	GATC	1 cut(s)	22
DpnII	GATC	1 cut(s)	20
DraIII	CACNNNGTG	1 cut(s)	368
EciI	GGCGGA	1 cut(s)	770
Eco130I	CCWWGG	1 cut(s)	285
Eco24I	GRGCYC	2 cut(s)	106, 637
Eco47III	AGCGCT	1 cut(s)	91
Eco57I	CTGAAG	2 cut(s)	195, 255
Eco91I	GGTNACC	2 cut(s)	416, 653
EcoO65I	GGTNACC	2 cut(s)	416, 653
EcoRII	CCWGG	2 cut(s)	166, 520
EcoT14I	CCWWGG	1 cut(s)	285
EcoT22I	ATGCAT	1 cut(s)	586
EcoT38I	GRGCYC	2 cut(s)	106, 637
ErhI	CCWWGG	1 cut(s)	285
FalI	AAGNNNNNCTT	2 cut(s)	449, 481
FauI	CCCGC	2 cut(s)	258, 598
Fnu4HI	GCNGC	5 cut(s)	49, 93, 122, 125, 382
FokI	GGATG	5 cut(s)	96, 171, 571, 683, 712
FriOI	GRGCYC	2 cut(s)	106, 637
Fsp4HI	GCNGC	5 cut(s)	49, 93, 122, 125, 382
FspBI	CTAG	2 cut(s)	552, 729
GlaI	GCGC	2 cut(s)	91, 250
GluI	GCNGC	5 cut(s)	49, 93, 122, 125, 382
GsaI	CCCAGC	2 cut(s)	109, 318
GsuI	CTGGAG	3 cut(s)	64, 150, 651
HaeII	RGCGCY	1 cut(s)	93
HhaI	GCGC	2 cut(s)	92, 251
Hin6I	GCGC	2 cut(s)	90, 249
HinP1I	GCGC	2 cut(s)	90, 249
HindIII	AAGCTT	1 cut(s)	463
HinfI	GANTC	4 cut(s)	202, 233, 664, 722
HphI	GGTGA	2 cut(s)	76, 665
Hpy188I	TCNGA	4 cut(s)	189, 238, 397, 558
Hpy188III	TCNNGA	7 cut(s)	18, 199, 230, 345, 630, 668, 738
HpyAV	CCTTC	3 cut(s)	233, 238, 451
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4V	TGCA	8 cut(s)	296, 449, 482, 497, 548, 584, 608, 703
HpyF10VI	GCNNNNNNNGC	8 cut(s)	48, 87, 101, 488, 526, 590, 605, 641
HpyF3I	CTNAG	1 cut(s)	514
HspAI	GCGC	2 cut(s)	90, 249
Kzo9I	GATC	1 cut(s)	20
LmnI	GCTCC	5 cut(s)	45, 56, 101, 356, 632
Lsp1109I	GCAGC	3 cut(s)	35, 79, 393
LweI	GCATC	5 cut(s)	108, 118, 465, 593, 690
MaeI	CTAG	2 cut(s)	552, 729
MaeIII	GTNAC	3 cut(s)	196, 416, 653
MalI	GATC	1 cut(s)	22
MbiI	CCGCTC	1 cut(s)	265
MboI	GATC	1 cut(s)	20
MhlI	GDGCHC	2 cut(s)	106, 637
MlyI	GAGTC	3 cut(s)	196, 242, 731
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	7 cut(s)	80, 83, 174, 379, 400, 611, 726
Mph1103I	ATGCAT	1 cut(s)	586
MseI	TTAA	1 cut(s)	309
MspA1I	CMGCKG	2 cut(s)	593, 644
MspR9I	CCNGG	2 cut(s)	168, 522
Mva1269I	GAATGC	1 cut(s)	586
MvaI	CCWGG	2 cut(s)	168, 522
MwoI	GCNNNNNNNGC	8 cut(s)	48, 87, 101, 488, 526, 590, 605, 641
NdeII	GATC	1 cut(s)	20
NlaIV	GGNNCC	2 cut(s)	103, 634
NmuCI	GTSAC	2 cut(s)	196, 653
NsiI	ATGCAT	1 cut(s)	586
PctI	GAATGC	1 cut(s)	586
PfeI	GAWTC	1 cut(s)	664
PkrI	GCNGC	5 cut(s)	50, 94, 123, 126, 383
PleI	GAGTC	3 cut(s)	196, 241, 730
PpsI	GAGTC	3 cut(s)	196, 241, 730
Psp6I	CCWGG	2 cut(s)	166, 520
PspEI	GGTNACC	2 cut(s)	416, 653
PspFI	CCCAGC	2 cut(s)	105, 314
PspGI	CCWGG	2 cut(s)	166, 520
PspN4I	GGNNCC	2 cut(s)	103, 634
PstNI	CAGNNNCTG	1 cut(s)	791
PvuII	CAGCTG	1 cut(s)	644
RsaI	GTAC	2 cut(s)	149, 216
RsaNI	GTAC	2 cut(s)	148, 215
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	5 cut(s)	49, 93, 122, 125, 382
Sau3AI	GATC	1 cut(s)	20
SchI	GAGTC	3 cut(s)	196, 242, 731
ScrFI	CCNGG	2 cut(s)	168, 522
SduI	GDGCHC	2 cut(s)	106, 637
SetI	ASST	8 cut(s)	50, 172, 361, 437, 467, 646, 737, 771
SfaNI	GCATC	5 cut(s)	108, 118, 465, 593, 690
SfcI	CTRYAG	1 cut(s)	531
SpeI	ACTAGT	1 cut(s)	551
SsiI	CCGC	7 cut(s)	57, 122, 125, 265, 591, 745, 755
SspMI	CTAG	2 cut(s)	552, 729
StyD4I	CCNGG	2 cut(s)	166, 520
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	1 cut(s)	307
TaqI	TCGA	1 cut(s)	23
TauI	GCSGC	2 cut(s)	124, 127
TfiI	GAWTC	1 cut(s)	664
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TseFI	GTSAC	2 cut(s)	196, 653
TseI	GCWGC	3 cut(s)	48, 92, 381
Tsp45I	GTSAC	2 cut(s)	196, 653
TspDTI	ATGAA	3 cut(s)	381, 501, 687
TspGWI	ACGGA	1 cut(s)	135
XspI	CTAG	2 cut(s)	552, 729
Zsp2I	ATGCAT	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.