Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011183.1

Orthogroup ID

OG0003368

Physical Location & Seq

Genomic Coordinates Reverse (-)

37475 .. 42305

Gene Structure 4831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011183.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

atgaattcattgtaccttgtcgcgactcctacttcagtaccaccaacaaatccagagtcggaagggaatggcgcagatgggaaagagcgtgcttcagccaaaaaacccaagggagctgcaggaagtacagttaaggctggggagagtggaaaagcaacttctgattctggaaatgatggagcttcacaaagggctgaaagtggcagcgagggttcatcagatggaagcgaggagaatggtaaccaccaggagtatggtgcaaacaagaagggaagctttgacaagatgtttgcagatggagcaaatgcacaaaataacacagctttagtgcctgggaagcccgtagtttctgtgcctgcaactagtctgaatatgggaatggacttgtggaatgcatcccccgctggtgctggaactgcaaaaatgagaggaaatcaatctggagccccatcagctgtcggtggtgaccattggattcaggggcgggtatccaatggagctccgccccgctggggatttttgccatccctagctccaacagacctcttgattggcaaaattgtgagcattccagagagcgaagcatcctccatagccggtgttcgtgatgaagttgatgagattaagctggagcttgagagcatgaagtctttccaagaggatacagagtggaacaaagaaagaaaaagtaggaatcaatggccggattctggaaaatttccggccacccctattgttttaggtaatttcgaccccttccggtcattttcagacttcatgctagttaggaaaattgttgggcttgatgagatgaagaggagaagcctggccccgacagcattggcggtggtcggcggcggctctgaccctaactccggcggccctttccggccacctccgggggtcaaaaatgtgatttctttacatttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

310

Amino Acids

32.33

Weight (kDa)

5.77

Isoelectric Point (pI)

39.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36730 AT4G36730
fragaria_vesca	FvH4_1g13880 FvH4_1g13880 FvH4_1g13880 FvH4_1g13880 FvH4_1g13880
malus_domestica	MD15G1266700.v1.1
prunus_persica	Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1
pyrus_communis	pycom02g11970 pycom15g23210
rosa_chinensis	RchiOBHm_Chr2g0102191
rosa_laevigata	RLG00000017087 RLG00000017137
rosa_multiflora	Rmu_co8040408.1_g000001 Rmu_co8264951.1_g000001 Rmu_sc0010937.1_g000010 Rmu_sc0011183.1_g000011 Rmu_sc0020365.1_g000005
rosa_roxburghii	Rroxscaffold_2G00140700 Rroxscaffold_2G00140710 Rroxscaffold_2G00141220
rosa_rugosa	Rorug02G0105200 Rorug02G0105300 Rorug02G0105300 Rorug02G0105300
rosa_samantha	Rh2AG153400 Rh2BG159300 Rh2CG158800 Rh2DG159000
rosa_wichuraiana	Rw2G011980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	23
AciI	CCGC	8 cut(s)	402, 484, 503, 508, 845, 855, 858, 879
AcoI	YGGCCR	3 cut(s)	701, 723, 890
AcsI	RAATTY	2 cut(s)	4, 716
AcuI	CTGAAG	2 cut(s)	18, 78
AfaI	GTAC	3 cut(s)	14, 39, 127
AfiI	CCNNNNNNNGG	4 cut(s)	512, 710, 875, 899
AhlI	ACTAGT	1 cut(s)	362
AjnI	CCWGG	3 cut(s)	246, 331, 825
AluBI	AGCT	9 cut(s)	116, 182, 276, 323, 455, 500, 533, 628, 634
AluI	AGCT	9 cut(s)	116, 182, 276, 323, 455, 500, 533, 628, 634
Alw21I	GWGCWC	1 cut(s)	502
AoxI	GGCC	5 cut(s)	701, 723, 828, 880, 890
ApeKI	GCWGC	2 cut(s)	116, 204
ApoI	RAATTY	2 cut(s)	4, 716
ArsI	GACNNNNNNTTYG	4 cut(s)	41, 73, 272, 304
Asp700I	GAANNNNTTC	1 cut(s)	650
AspLEI	GCGC	1 cut(s)	74
AspS9I	GGNCC	2 cut(s)	829, 881
AsuC2I	CCSGG	1 cut(s)	900
AsuHPI	GGTGA	1 cut(s)	476
BaeI	ACNNNNGTAYC	2 cut(s)	21, 54
BanII	GRGCYC	2 cut(s)	448, 502
Bbv12I	GWGCWC	1 cut(s)	502
BbvI	GCAGC	2 cut(s)	103, 216
BccI	CCATC	6 cut(s)	71, 170, 215, 290, 457, 532
BciT130I	CCWGG	3 cut(s)	248, 333, 827
BciVI	GTATCC	2 cut(s)	499, 655
BcnI	CCSGG	1 cut(s)	900
BcuI	ACTAGT	1 cut(s)	362
BfaI	CTAG	3 cut(s)	363, 530, 782
BfmI	CTRYAG	1 cut(s)	117
BfuI	GTATCC	2 cut(s)	499, 655
BisI	GCNGC	5 cut(s)	117, 205, 856, 859, 880
BlsI	GCNGC	5 cut(s)	118, 206, 857, 860, 881
Bme1390I	CCNGG	4 cut(s)	248, 333, 827, 900
BmgT120I	GGNCC	2 cut(s)	829, 881
BmiI	GGNNCC	2 cut(s)	445, 831
BmrFI	CCNGG	4 cut(s)	248, 333, 827, 900
BmsI	GCATC	2 cut(s)	404, 593
BpmI	CTGGAG	2 cut(s)	462, 650
BpuEI	CTTGAG	1 cut(s)	656
BpuMI	CCSGG	1 cut(s)	900
BsaJI	CCNNGG	3 cut(s)	108, 332, 899
BsaWI	WCCGGW	1 cut(s)	759
BsaXI	ACNNNNNCTCC	2 cut(s)	857, 887
Bsc4I	CCNNNNNNNGG	4 cut(s)	512, 710, 875, 899
Bse118I	RCCGGY	1 cut(s)	596
BseBI	CCWGG	3 cut(s)	248, 333, 827
BseDI	CCNNGG	3 cut(s)	108, 332, 899
BseGI	GGATG	3 cut(s)	395, 524, 584
BseLI	CCNNNNNNNGG	4 cut(s)	512, 710, 875, 899
BseRI	GAGGAG	2 cut(s)	245, 832
BseXI	GCAGC	2 cut(s)	103, 216
BseYI	CCCAGC	2 cut(s)	137, 510
Bsh1236I	CGCG	1 cut(s)	23
BshFI	GGCC	5 cut(s)	703, 725, 830, 882, 892
BsiHKAI	GWGCWC	1 cut(s)	502
BsiSI	CCGG	7 cut(s)	597, 704, 722, 760, 876, 889, 899
BslI	CCNNNNNNNGG	4 cut(s)	512, 710, 875, 899
BsmI	GAATGC	2 cut(s)	397, 567
BsnI	GGCC	5 cut(s)	703, 725, 830, 882, 892
Bsp1286I	GDGCHC	2 cut(s)	448, 502
Bsp68I	TCGCGA	1 cut(s)	23
BspACI	CCGC	8 cut(s)	402, 484, 503, 508, 845, 855, 858, 879
BspANI	GGCC	5 cut(s)	703, 725, 830, 882, 892
BspFNI	CGCG	1 cut(s)	23
BspLI	GGNNCC	2 cut(s)	445, 831
BspMAI	CTGCAG	1 cut(s)	121
BsrFI	RCCGGY	1 cut(s)	596
BssAI	RCCGGY	1 cut(s)	596
BssECI	CCNNGG	3 cut(s)	108, 332, 899
BssT1I	CCWWGG	1 cut(s)	108
Bst2UI	CCWGG	3 cut(s)	248, 333, 827
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	1 cut(s)	809
BstC8I	GCNNGC	2 cut(s)	90, 357
BstEII	GGTNACC	2 cut(s)	239, 464
BstF5I	GGATG	3 cut(s)	395, 524, 584
BstFNI	CGCG	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	74
BstMWI	GCNNNNNNNGC	6 cut(s)	299, 337, 401, 416, 452, 836
BstNI	CCWGG	3 cut(s)	248, 333, 827
BstPI	GGTNACC	2 cut(s)	239, 464
BstSCI	CCNGG	4 cut(s)	246, 331, 825, 898
BstSFI	CTRYAG	1 cut(s)	117
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	2 cut(s)	103, 216
BstXI	CCANNNNNNTGG	1 cut(s)	254
BsuI	GTATCC	2 cut(s)	499, 655
BsuRI	GGCC	5 cut(s)	703, 725, 830, 882, 892
BtsCI	GGATG	3 cut(s)	395, 524, 584
BtuMI	TCGCGA	1 cut(s)	23
Cac8I	GCNNGC	2 cut(s)	90, 357
CfoI	GCGC	1 cut(s)	74
Cfr10I	RCCGGY	1 cut(s)	596
Cfr13I	GGNCC	2 cut(s)	829, 881
Csp6I	GTAC	3 cut(s)	13, 38, 126
CspCI	CAANNNNNGTGG	2 cut(s)	715, 750
CviAII	CATG	2 cut(s)	643, 778
CviQI	GTAC	3 cut(s)	13, 38, 126
EaeI	YGGCCR	3 cut(s)	701, 723, 890
Eam1104I	CTCTTC	1 cut(s)	809
EarI	CTCTTC	1 cut(s)	809
EciI	GGCGGA	1 cut(s)	492
Ecl136II	GAGCTC	1 cut(s)	500
Eco130I	CCWWGG	1 cut(s)	108
Eco24I	GRGCYC	2 cut(s)	448, 502
Eco53kI	GAGCTC	1 cut(s)	500
Eco57I	CTGAAG	2 cut(s)	18, 78
Eco91I	GGTNACC	2 cut(s)	239, 464
EcoICRI	GAGCTC	1 cut(s)	500
EcoO65I	GGTNACC	2 cut(s)	239, 464
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	3 cut(s)	246, 331, 825
EcoT14I	CCWWGG	1 cut(s)	108
EcoT22I	ATGCAT	1 cut(s)	397
EcoT38I	GRGCYC	2 cut(s)	448, 502
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	2 cut(s)	646, 781
FaiI	YATR	5 cut(s)	255, 374, 593, 644, 779
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FatI	CATG	2 cut(s)	642, 777
FauI	CCCGC	3 cut(s)	409, 477, 515
Fnu4HI	GCNGC	5 cut(s)	117, 205, 856, 859, 880
FokI	GGATG	3 cut(s)	382, 511, 571
FriOI	GRGCYC	2 cut(s)	448, 502
Fsp4HI	GCNGC	5 cut(s)	117, 205, 856, 859, 880
FspBI	CTAG	3 cut(s)	363, 530, 782
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	5 cut(s)	117, 205, 856, 859, 880
GsaI	CCCAGC	2 cut(s)	141, 514
GsuI	CTGGAG	2 cut(s)	462, 650
HaeIII	GGCC	5 cut(s)	703, 725, 830, 882, 892
HapII	CCGG	7 cut(s)	597, 704, 722, 760, 876, 889, 899
HhaI	GCGC	1 cut(s)	74
Hin1II	CATG	2 cut(s)	646, 781
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HindIII	AAGCTT	1 cut(s)	274
HinfI	GANTC	6 cut(s)	25, 56, 164, 475, 694, 707
HpaII	CCGG	7 cut(s)	597, 704, 722, 760, 876, 889, 899
HphI	GGTGA	1 cut(s)	476
Hpy188I	TCNGA	6 cut(s)	61, 163, 220, 369, 772, 865
Hpy188III	TCNNGA	8 cut(s)	22, 53, 168, 441, 547, 572, 605, 711
HpyAV	CCTTC	3 cut(s)	56, 262, 766
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	7 cut(s)	119, 260, 293, 308, 359, 395, 419
HpyF10VI	GCNNNNNNNGC	6 cut(s)	299, 337, 401, 416, 452, 836
Hsp92II	CATG	2 cut(s)	646, 781
HspAI	GCGC	1 cut(s)	72
LmnI	GCTCC	8 cut(s)	113, 179, 299, 443, 497, 505, 538, 631
Lsp1109I	GCAGC	2 cut(s)	103, 216
LweI	GCATC	2 cut(s)	404, 593
MaeI	CTAG	3 cut(s)	363, 530, 782
MaeIII	GTNAC	2 cut(s)	239, 464
MboII	GAAGA	1 cut(s)	826
MhlI	GDGCHC	2 cut(s)	448, 502
MluCI	AATT	5 cut(s)	4, 558, 716, 745, 792
MlyI	GAGTC	2 cut(s)	19, 65
MmeI	TCCRAC	2 cut(s)	39, 560
MnlI	CCTC	8 cut(s)	202, 223, 422, 554, 598, 652, 810, 906
Mph1103I	ATGCAT	1 cut(s)	397
MroXI	GAANNNNTTC	1 cut(s)	650
MseI	TTAA	2 cut(s)	132, 624
MspA1I	CMGCKG	3 cut(s)	404, 455, 510
MspI	CCGG	7 cut(s)	597, 704, 722, 760, 876, 889, 899
MspR9I	CCNGG	4 cut(s)	248, 333, 827, 900
Mva1269I	GAATGC	2 cut(s)	397, 567
MvaI	CCWGG	3 cut(s)	248, 333, 827
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	6 cut(s)	299, 337, 401, 416, 452, 836
NciI	CCSGG	1 cut(s)	900
NlaIII	CATG	2 cut(s)	646, 781
NlaIV	GGNNCC	2 cut(s)	445, 831
NmuCI	GTSAC	1 cut(s)	464
NruI	TCGCGA	1 cut(s)	23
NsiI	ATGCAT	1 cut(s)	397
PctI	GAATGC	2 cut(s)	397, 567
PdmI	GAANNNNTTC	1 cut(s)	650
PfeI	GAWTC	4 cut(s)	164, 475, 694, 707
PkrI	GCNGC	5 cut(s)	118, 206, 857, 860, 881
PleI	GAGTC	2 cut(s)	19, 64
PpsI	GAGTC	2 cut(s)	19, 64
Psp124BI	GAGCTC	1 cut(s)	502
Psp6I	CCWGG	3 cut(s)	246, 331, 825
PspEI	GGTNACC	2 cut(s)	239, 464
PspFI	CCCAGC	2 cut(s)	137, 510
PspGI	CCWGG	3 cut(s)	246, 331, 825
PspN4I	GGNNCC	2 cut(s)	445, 831
PspPI	GGNCC	2 cut(s)	829, 881
PstI	CTGCAG	1 cut(s)	121
PvuII	CAGCTG	1 cut(s)	455
RruI	TCGCGA	1 cut(s)	23
RsaI	GTAC	3 cut(s)	14, 39, 127
RsaNI	GTAC	3 cut(s)	13, 38, 126
SacI	GAGCTC	1 cut(s)	502
SaqAI	TTAA	2 cut(s)	132, 624
SatI	GCNGC	5 cut(s)	117, 205, 856, 859, 880
Sau96I	GGNCC	2 cut(s)	829, 881
SchI	GAGTC	2 cut(s)	19, 65
ScrFI	CCNGG	4 cut(s)	248, 333, 827, 900
SduI	GDGCHC	2 cut(s)	448, 502
SfaNI	GCATC	2 cut(s)	404, 593
SfcI	CTRYAG	1 cut(s)	117
SmlI	CTYRAG	1 cut(s)	635
SmoI	CTYRAG	1 cut(s)	635
SpeI	ACTAGT	1 cut(s)	362
Sse9I	AATT	5 cut(s)	4, 558, 716, 745, 792
SsiI	CCGC	8 cut(s)	402, 484, 503, 508, 845, 855, 858, 879
SspMI	CTAG	3 cut(s)	363, 530, 782
SstI	GAGCTC	1 cut(s)	502
StyD4I	CCNGG	4 cut(s)	246, 331, 825, 898
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	130
TaqI	TCGA	1 cut(s)	750
TasI	AATT	5 cut(s)	4, 558, 716, 745, 792
TatI	WGTACW	1 cut(s)	125
TauI	GCSGC	3 cut(s)	858, 861, 882
TfiI	GAWTC	4 cut(s)	164, 475, 694, 707
Tru1I	TTAA	2 cut(s)	132, 624
Tru9I	TTAA	2 cut(s)	132, 624
TseFI	GTSAC	1 cut(s)	464
TseI	GCWGC	2 cut(s)	116, 204
Tsp45I	GTSAC	1 cut(s)	464
TspDTI	ATGAA	6 cut(s)	17, 204, 624, 659, 766, 827
XapI	RAATTY	2 cut(s)	4, 716
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
XmnI	GAANNNNTTC	1 cut(s)	650
XspI	CTAG	3 cut(s)	363, 530, 782
Zsp2I	ATGCAT	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.