Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020365.1

Orthogroup ID

OG0003368

Physical Location & Seq

Genomic Coordinates Forward (+)

7826 .. 9795

Gene Structure 1970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020365.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

atggcgcagatgggaaagagcgtgcttcagccaaaaaacccaagggagctgcaggaaactcctacttcagtaccaccaacaaatccagagtcggaagggaatggcgcagatgggaaagagcgtgcttcagccaaaaaacccaagggagctgcaggaagtacagttaaggctggggagagtggaaaagcaacttctggttctgtaaatgatggagcttcacaaagggctgaaagtggcagcgagggttcatcagatggaagcgaggagaatggtaaccaccaagtatgtgtatgccctgcagctaatactccaagatgttctcgagagtatggtgcaaacaagaagggaagctttgacaagatgtttgcagatggagcaaatgcacaaaataacacagctttagtgcctgggaagcctgtagtttctgtgcctgcaactagtctgaatatgggaatggacttgtggaatgcatcccccgctggtgctggaactgcaaaaatgagaggaaatcaatctggagccccatcagttgtcggtgttctagagacatccattaaactacaaaggtcccctagccatatatggcctcagctccaactagggatggcaatggggcgggttggggatggggatcacaataccatcctcatccccggggtcattttctaccctcatccccgccccaatccccaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

231

Amino Acids

23.76

Weight (kDa)

8.77

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36730 AT4G36730
fragaria_vesca	FvH4_1g13880 FvH4_1g13880 FvH4_1g13880 FvH4_1g13880 FvH4_1g13880
malus_domestica	MD15G1266700.v1.1
prunus_persica	Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1
pyrus_communis	pycom02g11970 pycom15g23210
rosa_chinensis	RchiOBHm_Chr2g0102191
rosa_laevigata	RLG00000017087 RLG00000017137
rosa_multiflora	Rmu_co8040408.1_g000001 Rmu_co8264951.1_g000001 Rmu_sc0010937.1_g000010 Rmu_sc0011183.1_g000011 Rmu_sc0020365.1_g000005
rosa_roxburghii	Rroxscaffold_2G00140700 Rroxscaffold_2G00140710 Rroxscaffold_2G00141220
rosa_rugosa	Rorug02G0105200 Rorug02G0105300 Rorug02G0105300 Rorug02G0105300
rosa_samantha	Rh2AG153400 Rh2BG159300 Rh2CG158800 Rh2DG159000
rosa_wichuraiana	Rw2G011980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	477, 616, 679
AclWI	GGATC	1 cut(s)	639
AcuI	CTGAAG	3 cut(s)	11, 51, 111
AfaI	GTAC	2 cut(s)	72, 160
AhlI	ACTAGT	1 cut(s)	437
AjnI	CCWGG	1 cut(s)	406
AluBI	AGCT	7 cut(s)	49, 149, 215, 302, 351, 398, 592
AluI	AGCT	7 cut(s)	49, 149, 215, 302, 351, 398, 592
Alw26I	GTCTC	1 cut(s)	539
AlwI	GGATC	1 cut(s)	639
Ama87I	CYCGRG	2 cut(s)	321, 653
AoxI	GGCC	1 cut(s)	584
ApeKI	GCWGC	4 cut(s)	49, 149, 237, 299
ArsI	GACNNNNNNTTYG	4 cut(s)	74, 106, 347, 379
AspLEI	GCGC	2 cut(s)	7, 107
AspS9I	GGNCC	1 cut(s)	567
AsuC2I	CCSGG	2 cut(s)	654, 655
AvaI	CYCGRG	2 cut(s)	321, 653
AvaII	GGWCC	1 cut(s)	567
BaeI	ACNNNNGTAYC	2 cut(s)	54, 87
BanII	GRGCYC	1 cut(s)	523
BbvCI	CCTCAGC	1 cut(s)	588
BbvI	GCAGC	4 cut(s)	36, 136, 249, 311
BccI	CCATC	9 cut(s)	4, 104, 203, 248, 365, 532, 598, 620, 650
BciT130I	CCWGG	1 cut(s)	408
BcnI	CCSGG	2 cut(s)	654, 655
BcoDI	GTCTC	1 cut(s)	539
BcuI	ACTAGT	1 cut(s)	437
BfaI	CTAG	4 cut(s)	438, 542, 573, 599
BfmI	CTRYAG	4 cut(s)	50, 150, 297, 417
BisI	GCNGC	4 cut(s)	50, 150, 238, 300
BlsI	GCNGC	4 cut(s)	51, 151, 239, 301
Bme1390I	CCNGG	3 cut(s)	408, 654, 655
Bme18I	GGWCC	1 cut(s)	567
BmeT110I	CYCGRG	2 cut(s)	321, 653
BmgT120I	GGNCC	1 cut(s)	567
BmiI	GGNNCC	2 cut(s)	520, 569
BmrFI	CCNGG	3 cut(s)	408, 654, 655
BmsI	GCATC	1 cut(s)	479
BpmI	CTGGAG	1 cut(s)	537
Bpu10I	CCTNAGC	1 cut(s)	588
BpuMI	CCSGG	2 cut(s)	654, 655
BsaBI	GATNNNNATC	1 cut(s)	630
BsaJI	CCNNGG	6 cut(s)	41, 141, 407, 652, 653, 654
Bse3DI	GCAATG	1 cut(s)	615
Bse8I	GATNNNNATC	1 cut(s)	630
BseBI	CCWGG	1 cut(s)	408
BseDI	CCNNGG	6 cut(s)	41, 141, 407, 652, 653, 654
BseGI	GGATG	7 cut(s)	470, 548, 609, 631, 642, 648, 673
BseJI	GATNNNNATC	1 cut(s)	630
BseMI	GCAATG	1 cut(s)	615
BseMII	CTCAG	1 cut(s)	602
BseRI	GAGGAG	1 cut(s)	278
BseXI	GCAGC	4 cut(s)	36, 136, 249, 311
BseYI	CCCAGC	1 cut(s)	170
BshFI	GGCC	1 cut(s)	586
BsiHKCI	CYCGRG	2 cut(s)	321, 653
BsiSI	CCGG	1 cut(s)	654
BslFI	GGGAC	1 cut(s)	553
BsmAI	GTCTC	1 cut(s)	539
BsmFI	GGGAC	1 cut(s)	553
BsmI	GAATGC	1 cut(s)	472
BsnI	GGCC	1 cut(s)	586
BsoBI	CYCGRG	2 cut(s)	321, 653
Bsp1286I	GDGCHC	1 cut(s)	523
Bsp143I	GATC	1 cut(s)	631
BspACI	CCGC	3 cut(s)	477, 616, 679
BspANI	GGCC	1 cut(s)	586
BspCNI	CTCAG	1 cut(s)	601
BspLI	GGNNCC	2 cut(s)	520, 569
BspMAI	CTGCAG	3 cut(s)	54, 154, 301
BspPI	GGATC	1 cut(s)	639
BsrDI	GCAATG	1 cut(s)	615
BssECI	CCNNGG	6 cut(s)	41, 141, 407, 652, 653, 654
BssMI	GATC	1 cut(s)	631
BssT1I	CCWWGG	2 cut(s)	41, 141
Bst2UI	CCWGG	1 cut(s)	408
Bst4CI	ACNGT	1 cut(s)	163
BstC8I	GCNNGC	3 cut(s)	23, 123, 432
BstDEI	CTNAG	1 cut(s)	588
BstEII	GGTNACC	1 cut(s)	272
BstF5I	GGATG	7 cut(s)	470, 548, 609, 631, 642, 648, 673
BstHHI	GCGC	2 cut(s)	7, 107
BstKTI	GATC	1 cut(s)	634
BstMAI	GTCTC	1 cut(s)	539
BstMBI	GATC	1 cut(s)	631
BstMWI	GCNNNNNNNGC	4 cut(s)	374, 412, 476, 491
BstNI	CCWGG	1 cut(s)	408
BstPI	GGTNACC	1 cut(s)	272
BstSCI	CCNGG	3 cut(s)	406, 652, 653
BstSFI	CTRYAG	4 cut(s)	50, 150, 297, 417
BstV1I	GCAGC	4 cut(s)	36, 136, 249, 311
BsuRI	GGCC	1 cut(s)	586
BtsCI	GGATG	7 cut(s)	470, 548, 609, 631, 642, 648, 673
Cac8I	GCNNGC	3 cut(s)	23, 123, 432
CfoI	GCGC	2 cut(s)	7, 107
Cfr13I	GGNCC	1 cut(s)	567
Cfr9I	CCCGGG	1 cut(s)	653
Csp6I	GTAC	2 cut(s)	71, 159
CviQI	GTAC	2 cut(s)	71, 159
DdeI	CTNAG	1 cut(s)	588
DpnI	GATC	1 cut(s)	633
DpnII	GATC	1 cut(s)	631
Eco130I	CCWWGG	2 cut(s)	41, 141
Eco24I	GRGCYC	1 cut(s)	523
Eco47I	GGWCC	1 cut(s)	567
Eco57I	CTGAAG	3 cut(s)	11, 51, 111
Eco88I	CYCGRG	2 cut(s)	321, 653
Eco91I	GGTNACC	1 cut(s)	272
EcoO109I	RGGNCCY	1 cut(s)	567
EcoO65I	GGTNACC	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	406
EcoT14I	CCWWGG	2 cut(s)	41, 141
EcoT22I	ATGCAT	1 cut(s)	472
EcoT38I	GRGCYC	1 cut(s)	523
ErhI	CCWWGG	2 cut(s)	41, 141
FaiI	YATR	7 cut(s)	286, 292, 330, 449, 579, 581, 583
FalI	AAGNNNNNCTT	2 cut(s)	335, 367
FaqI	GGGAC	1 cut(s)	553
FauI	CCCGC	3 cut(s)	484, 609, 686
Fnu4HI	GCNGC	4 cut(s)	50, 150, 238, 300
FokI	GGATG	7 cut(s)	457, 535, 616, 629, 635, 638, 660
FriOI	GRGCYC	1 cut(s)	523
Fsp4HI	GCNGC	4 cut(s)	50, 150, 238, 300
FspBI	CTAG	4 cut(s)	438, 542, 573, 599
GlaI	GCGC	2 cut(s)	6, 106
GluI	GCNGC	4 cut(s)	50, 150, 238, 300
GsaI	CCCAGC	1 cut(s)	174
GsuI	CTGGAG	1 cut(s)	537
HaeIII	GGCC	1 cut(s)	586
HapII	CCGG	1 cut(s)	654
HhaI	GCGC	2 cut(s)	7, 107
Hin6I	GCGC	2 cut(s)	5, 105
HinP1I	GCGC	2 cut(s)	5, 105
HindIII	AAGCTT	1 cut(s)	349
HinfI	GANTC	1 cut(s)	89
HpaII	CCGG	1 cut(s)	654
Hpy188I	TCNGA	3 cut(s)	94, 253, 444
Hpy188III	TCNNGA	5 cut(s)	86, 321, 323, 516, 542
HpyAV	CCTTC	2 cut(s)	89, 337
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4V	TGCA	9 cut(s)	52, 152, 299, 335, 368, 383, 434, 470, 494
HpyF10VI	GCNNNNNNNGC	4 cut(s)	374, 412, 476, 491
HpyF3I	CTNAG	1 cut(s)	588
HspAI	GCGC	2 cut(s)	5, 105
Kzo9I	GATC	1 cut(s)	631
LmnI	GCTCC	6 cut(s)	46, 146, 212, 374, 518, 597
Lsp1109I	GCAGC	4 cut(s)	36, 136, 249, 311
LweI	GCATC	1 cut(s)	479
MaeI	CTAG	4 cut(s)	438, 542, 573, 599
MaeIII	GTNAC	1 cut(s)	272
MalI	GATC	1 cut(s)	633
MboI	GATC	1 cut(s)	631
MhlI	GDGCHC	1 cut(s)	523
MlyI	GAGTC	1 cut(s)	98
MmeI	TCCRAC	2 cut(s)	72, 619
MnlI	CCTC	6 cut(s)	235, 256, 497, 597, 656, 681
Mph1103I	ATGCAT	1 cut(s)	472
MseI	TTAA	2 cut(s)	165, 555
MspA1I	CMGCKG	1 cut(s)	479
MspI	CCGG	1 cut(s)	654
MspR9I	CCNGG	3 cut(s)	408, 654, 655
Mva1269I	GAATGC	1 cut(s)	472
MvaI	CCWGG	1 cut(s)	408
MwoI	GCNNNNNNNGC	4 cut(s)	374, 412, 476, 491
NciI	CCSGG	2 cut(s)	654, 655
NdeII	GATC	1 cut(s)	631
NlaIV	GGNNCC	2 cut(s)	520, 569
NsiI	ATGCAT	1 cut(s)	472
PaeR7I	CTCGAG	1 cut(s)	321
PctI	GAATGC	1 cut(s)	472
PkrI	GCNGC	4 cut(s)	51, 151, 239, 301
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PpuMI	RGGWCCY	1 cut(s)	567
Psp5II	RGGWCCY	1 cut(s)	567
Psp6I	CCWGG	1 cut(s)	406
PspEI	GGTNACC	1 cut(s)	272
PspFI	CCCAGC	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	406
PspN4I	GGNNCC	2 cut(s)	520, 569
PspPI	GGNCC	1 cut(s)	567
PspPPI	RGGWCCY	1 cut(s)	567
PstI	CTGCAG	3 cut(s)	54, 154, 301
RsaI	GTAC	2 cut(s)	72, 160
RsaNI	GTAC	2 cut(s)	71, 159
SaqAI	TTAA	2 cut(s)	165, 555
SatI	GCNGC	4 cut(s)	50, 150, 238, 300
Sau3AI	GATC	1 cut(s)	631
Sau96I	GGNCC	1 cut(s)	567
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	3 cut(s)	408, 654, 655
SduI	GDGCHC	1 cut(s)	523
SetI	ASST	8 cut(s)	51, 151, 217, 304, 353, 400, 569, 594
SfaNI	GCATC	1 cut(s)	479
SfcI	CTRYAG	4 cut(s)	50, 150, 297, 417
Sfr274I	CTCGAG	1 cut(s)	321
SinI	GGWCC	1 cut(s)	567
SlaI	CTCGAG	1 cut(s)	321
SmaI	CCCGGG	1 cut(s)	655
SmlI	CTYRAG	1 cut(s)	321
SmoI	CTYRAG	1 cut(s)	321
SpeI	ACTAGT	1 cut(s)	437
SsiI	CCGC	3 cut(s)	477, 616, 679
SspMI	CTAG	4 cut(s)	438, 542, 573, 599
StyD4I	CCNGG	3 cut(s)	406, 652, 653
StyI	CCWWGG	2 cut(s)	41, 141
TaaI	ACNGT	1 cut(s)	163
TaqI	TCGA	1 cut(s)	322
TatI	WGTACW	1 cut(s)	158
Tru1I	TTAA	2 cut(s)	165, 555
Tru9I	TTAA	2 cut(s)	165, 555
TseI	GCWGC	4 cut(s)	49, 149, 237, 299
TspDTI	ATGAA	1 cut(s)	237
TspMI	CCCGGG	1 cut(s)	653
VpaK11BI	GGWCC	1 cut(s)	567
XbaI	TCTAGA	1 cut(s)	541
XhoI	CTCGAG	1 cut(s)	321
XmaI	CCCGGG	1 cut(s)	653
XspI	CTAG	4 cut(s)	438, 542, 573, 599
Zsp2I	ATGCAT	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.