Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003368

Physical Location & Seq

Genomic Coordinates Forward (+)

78992982 .. 78997856

Gene Structure 4875 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00140700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGGGACAGGGGAAGAGGGCACACCCTCTAAGCCTTCCAAACAAGCTTCTACAGCTCAGGAAATACCTACACAGCCTTCGTATCCTGATTGGTCCAGCTCTATGCAGGCTTATTATGGTGCTGGAGCTGCTCCACCGCCCTTTTTCGCTTCCTCTGTTGCTTCACCAGCACCGCACCCATATATGTGGGGGAGCCAGCATCCTATGCTGCCGCCTTATGGAACTCCTGTTCCGTACCCTGCTATGTATCCTCCAGGTGGAGTTTATGCTCATCCGGGTATGGTCACGACTCCTACTTCAGTACCACCAACAAATCCAGAGTCAGAAGGGAAGGGCGCAGATGGGAAAGAGCGAGCTTCAGCCAAAAAACCCAAGGGAGCTGCAGGAAATACAGTTAAGGCTGGGGAGAGTGGAAAAGCAACTTCTGGTTCTGGAAATGATGGAGCTTCACAAAGTGCTGAAAGTGGTAGCGAGGGTTCATCAGATGGAAGCGAGGAGAATGGTAACCACCAGGAGTATGGTGCAAACAAGAAGGGAAGCTTTGACAAGATGCTTGCAGATGGAGCAAATGCACAAAATAACACAGCTTTAGTGCCTGGGAAGCCTGTAGTTTCTATGCCTGCAACTAGTCTGAATATGGGAATGGACTTGTGGAATGCATCCCCGCTGGTGCTGGAACTGCAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

229

Amino Acids

23.34

Weight (kDa)

5.35

Isoelectric Point (pI)

47.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFMR	PF07777	1 - 94	5.7e-34	G-box binding protein MFMR

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36730 AT4G36730
fragaria_vesca	FvH4_1g13880 FvH4_1g13880 FvH4_1g13880 FvH4_1g13880 FvH4_1g13880
malus_domestica	MD15G1266700.v1.1
prunus_persica	Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1
pyrus_communis	pycom02g11970 pycom15g23210
rosa_chinensis	RchiOBHm_Chr2g0102191
rosa_laevigata	RLG00000017087 RLG00000017137
rosa_multiflora	Rmu_co8040408.1_g000001 Rmu_co8264951.1_g000001 Rmu_sc0010937.1_g000010 Rmu_sc0011183.1_g000011 Rmu_sc0020365.1_g000005
rosa_roxburghii	Rroxscaffold_2G00140700 Rroxscaffold_2G00140710 Rroxscaffold_2G00141220
rosa_rugosa	Rorug02G0105200 Rorug02G0105300 Rorug02G0105300 Rorug02G0105300
rosa_samantha	Rh2AG153400 Rh2BG159300 Rh2CG158800 Rh2DG159000
rosa_wichuraiana	Rw2G011980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	137, 173, 212, 665
AcuI	CTGAAG	2 cut(s)	282, 342
AdeI	CACNNNGTG	1 cut(s)	455
AfaI	GTAC	2 cut(s)	236, 303
AfiI	CCNNNNNNNGG	2 cut(s)	218, 257
AhlI	ACTAGT	1 cut(s)	626
AjnI	CCWGG	3 cut(s)	253, 510, 595
AloI	GAACNNNNNNTCC	4 cut(s)	213, 214, 245, 246
AluBI	AGCT	9 cut(s)	47, 56, 99, 128, 356, 380, 446, 540, 587
AluI	AGCT	9 cut(s)	47, 56, 99, 128, 356, 380, 446, 540, 587
ApeKI	GCWGC	3 cut(s)	128, 208, 380
ArsI	GACNNNNNNTTYG	2 cut(s)	305, 337
AspLEI	GCGC	1 cut(s)	338
AspS9I	GGNCC	1 cut(s)	93
AsuC2I	CCSGG	1 cut(s)	276
AsuHPI	GGTGA	1 cut(s)	156
AvaII	GGWCC	1 cut(s)	93
BaeGI	GKGCMC	1 cut(s)	23
BaeI	ACNNNNGTAYC	2 cut(s)	285, 318
BbvI	GCAGC	3 cut(s)	115, 195, 367
BccI	CCATC	4 cut(s)	335, 434, 479, 554
BciT130I	CCWGG	3 cut(s)	255, 512, 597
BciVI	GTATCC	2 cut(s)	93, 258
BcnI	CCSGG	1 cut(s)	276
BcuI	ACTAGT	1 cut(s)	626
BfaI	CTAG	1 cut(s)	627
BfmI	CTRYAG	3 cut(s)	51, 381, 606
BfuI	GTATCC	2 cut(s)	93, 258
BisI	GCNGC	4 cut(s)	129, 209, 212, 381
BlsI	GCNGC	4 cut(s)	130, 210, 213, 382
Bme1390I	CCNGG	4 cut(s)	255, 276, 512, 597
Bme18I	GGWCC	1 cut(s)	93
BmgT120I	GGNCC	1 cut(s)	93
BmiI	GGNNCC	1 cut(s)	194
BmrFI	CCNGG	4 cut(s)	255, 276, 512, 597
BmsI	GCATC	3 cut(s)	208, 540, 668
BpmI	CTGGAG	2 cut(s)	144, 237
Bpu10I	CCTNAGC	1 cut(s)	57
BpuMI	CCSGG	1 cut(s)	276
BsaJI	CCNNGG	2 cut(s)	372, 596
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 257
BseBI	CCWGG	3 cut(s)	255, 512, 597
BseDI	CCNNGG	2 cut(s)	372, 596
BseGI	GGATG	3 cut(s)	199, 271, 659
BseLI	CCNNNNNNNGG	2 cut(s)	218, 257
BseMII	CTCAG	1 cut(s)	71
BseRI	GAGGAG	1 cut(s)	509
BseSI	GKGCMC	1 cut(s)	23
BseXI	GCAGC	3 cut(s)	115, 195, 367
BseYI	CCCAGC	1 cut(s)	401
BsiSI	CCGG	1 cut(s)	275
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	2 cut(s)	218, 257
BsmFI	GGGAC	1 cut(s)	19
BsmI	GAATGC	1 cut(s)	661
Bsp1286I	GDGCHC	1 cut(s)	23
BspACI	CCGC	4 cut(s)	137, 173, 212, 665
BspCNI	CTCAG	1 cut(s)	70
BspLI	GGNNCC	1 cut(s)	194
BspMAI	CTGCAG	1 cut(s)	385
BssECI	CCNNGG	2 cut(s)	372, 596
BssT1I	CCWWGG	1 cut(s)	372
Bst2UI	CCWGG	3 cut(s)	255, 512, 597
Bst4CI	ACNGT	1 cut(s)	394
Bst6I	CTCTTC	1 cut(s)	9
BstAPI	GCANNNNNTGC	1 cut(s)	205
BstC8I	GCNNGC	5 cut(s)	108, 197, 354, 555, 621
BstDEI	CTNAG	2 cut(s)	30, 57
BstEII	GGTNACC	1 cut(s)	503
BstF5I	GGATG	3 cut(s)	199, 271, 659
BstHHI	GCGC	1 cut(s)	338
BstMWI	GCNNNNNNNGC	7 cut(s)	53, 128, 167, 205, 563, 601, 679
BstNI	CCWGG	3 cut(s)	255, 512, 597
BstPI	GGTNACC	1 cut(s)	503
BstSCI	CCNGG	4 cut(s)	253, 274, 510, 595
BstSFI	CTRYAG	3 cut(s)	51, 381, 606
BstSLI	GKGCMC	1 cut(s)	23
BstV1I	GCAGC	3 cut(s)	115, 195, 367
BstXI	CCANNNNNNTGG	2 cut(s)	186, 518
BsuI	GTATCC	2 cut(s)	93, 258
BtsCI	GGATG	3 cut(s)	199, 271, 659
Cac8I	GCNNGC	5 cut(s)	108, 197, 354, 555, 621
CfoI	GCGC	1 cut(s)	338
Cfr13I	GGNCC	1 cut(s)	93
Csp6I	GTAC	2 cut(s)	235, 302
CviQI	GTAC	2 cut(s)	235, 302
DdeI	CTNAG	2 cut(s)	30, 57
DraIII	CACNNNGTG	1 cut(s)	455
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	372
Eco47I	GGWCC	1 cut(s)	93
Eco57I	CTGAAG	2 cut(s)	282, 342
Eco91I	GGTNACC	1 cut(s)	503
EcoO65I	GGTNACC	1 cut(s)	503
EcoRII	CCWGG	3 cut(s)	253, 510, 595
EcoT14I	CCWWGG	1 cut(s)	372
EcoT22I	ATGCAT	1 cut(s)	661
ErhI	CCWWGG	1 cut(s)	372
FalI	AAGNNNNNCTT	2 cut(s)	524, 556
FaqI	GGGAC	1 cut(s)	19
FauI	CCCGC	1 cut(s)	672
Fnu4HI	GCNGC	4 cut(s)	129, 209, 212, 381
FokI	GGATG	3 cut(s)	186, 258, 646
Fsp4HI	GCNGC	4 cut(s)	129, 209, 212, 381
FspBI	CTAG	1 cut(s)	627
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	4 cut(s)	129, 209, 212, 381
GsaI	CCCAGC	1 cut(s)	405
GsuI	CTGGAG	2 cut(s)	144, 237
HapII	CCGG	1 cut(s)	275
HhaI	GCGC	1 cut(s)	338
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HindIII	AAGCTT	2 cut(s)	45, 538
HinfI	GANTC	2 cut(s)	289, 320
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	1 cut(s)	156
Hpy188I	TCNGA	3 cut(s)	325, 484, 633
Hpy188III	TCNNGA	5 cut(s)	59, 86, 286, 317, 432
HpyAV	CCTTC	5 cut(s)	45, 87, 320, 325, 526
HpyCH4III	ACNGT	1 cut(s)	394
HpyCH4V	TGCA	8 cut(s)	106, 383, 524, 557, 572, 623, 659, 682
HpyF10VI	GCNNNNNNNGC	7 cut(s)	53, 128, 167, 205, 563, 601, 679
HpyF3I	CTNAG	2 cut(s)	30, 57
HspAI	GCGC	1 cut(s)	336
LmnI	GCTCC	6 cut(s)	125, 136, 192, 377, 443, 563
Lsp1109I	GCAGC	3 cut(s)	115, 195, 367
LweI	GCATC	3 cut(s)	208, 540, 668
MaeI	CTAG	1 cut(s)	627
MaeIII	GTNAC	2 cut(s)	283, 503
MboII	GAAGA	1 cut(s)	26
MhlI	GDGCHC	1 cut(s)	23
MlyI	GAGTC	2 cut(s)	283, 329
MnlI	CCTC	6 cut(s)	10, 37, 163, 261, 466, 487
Mph1103I	ATGCAT	1 cut(s)	661
MseI	TTAA	1 cut(s)	396
MslI	CAYNNNNRTG	1 cut(s)	184
MspA1I	CMGCKG	1 cut(s)	667
MspI	CCGG	1 cut(s)	275
MspR9I	CCNGG	4 cut(s)	255, 276, 512, 597
Mva1269I	GAATGC	1 cut(s)	661
MvaI	CCWGG	3 cut(s)	255, 512, 597
MwoI	GCNNNNNNNGC	7 cut(s)	53, 128, 167, 205, 563, 601, 679
NciI	CCSGG	1 cut(s)	276
NlaIV	GGNNCC	1 cut(s)	194
NmuCI	GTSAC	1 cut(s)	283
NsiI	ATGCAT	1 cut(s)	661
PctI	GAATGC	1 cut(s)	661
PkrI	GCNGC	4 cut(s)	130, 210, 213, 382
PleI	GAGTC	2 cut(s)	283, 328
PpsI	GAGTC	2 cut(s)	283, 328
Psp6I	CCWGG	3 cut(s)	253, 510, 595
PspEI	GGTNACC	1 cut(s)	503
PspFI	CCCAGC	1 cut(s)	401
PspGI	CCWGG	3 cut(s)	253, 510, 595
PspN4I	GGNNCC	1 cut(s)	194
PspPI	GGNCC	1 cut(s)	93
PsrI	GAACNNNNNNTAC	2 cut(s)	460, 492
PstI	CTGCAG	1 cut(s)	385
RsaI	GTAC	2 cut(s)	236, 303
RsaNI	GTAC	2 cut(s)	235, 302
RseI	CAYNNNNRTG	1 cut(s)	184
SaqAI	TTAA	1 cut(s)	396
SatI	GCNGC	4 cut(s)	129, 209, 212, 381
Sau96I	GGNCC	1 cut(s)	93
SchI	GAGTC	2 cut(s)	283, 329
ScrFI	CCNGG	4 cut(s)	255, 276, 512, 597
SduI	GDGCHC	1 cut(s)	23
SfaNI	GCATC	3 cut(s)	208, 540, 668
SfcI	CTRYAG	3 cut(s)	51, 381, 606
SinI	GGWCC	1 cut(s)	93
SmiMI	CAYNNNNRTG	1 cut(s)	184
SpeI	ACTAGT	1 cut(s)	626
SsiI	CCGC	4 cut(s)	137, 173, 212, 665
SspMI	CTAG	1 cut(s)	627
StyD4I	CCNGG	4 cut(s)	253, 274, 510, 595
StyI	CCWWGG	1 cut(s)	372
TaaI	ACNGT	1 cut(s)	394
TauI	GCSGC	1 cut(s)	214
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	3 cut(s)	128, 208, 380
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	1 cut(s)	468
TspGWI	ACGGA	1 cut(s)	222
VpaK11BI	GGWCC	1 cut(s)	93
XcmI	CCANNNNNNNNNTGG	1 cut(s)	515
XspI	CTAG	1 cut(s)	627
Zsp2I	ATGCAT	1 cut(s)	661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.