Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003368

Physical Location & Seq

Genomic Coordinates Reverse (-)

17278423 .. 17280972

Gene Structure 2550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g23210.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGCAGGCTTATTATGGTCCTGGAGGTACTCCGCCTCCCTTTTTCGCCACCACTGTTGCTTCCTCAACTCCACACCCCTATATGTGGGGAGCCCAGCATCCTATGATGCCGCCATATGGAACTCCAGTTCCATATCCGGCCATGTATCCTCCAGGTGGAGTTTATGCTCATCCCAGTATGGTGATGACCCCAGGCGCACCACAACCAACCCCGGAGTTGGAAGGGAAGGGTCCTGACGGGAAAGAGCGGGCTTCAACCAAAAAACCCAAGGGAACTGCAGGAACTGCAGGTTTGGCTGGTGGCAAGGTTGTGGAGAGTGGAAAAGCAACTTCAGGTTCAGGAAATGATGGCGCTTCGCAAAGTGGTGAAAGTGGTAGTGAGGGTTCATCGGATGGAAGCGATGATAATGCTAACAATCAGGAGTATGGTGCAAACAAGAAGGGAAGCTTTGACAAGATGCTTGCGGATGGGGCAAATGCACAAAATAGCACTGGGACACTTGTTCAGGCTTCAGTGCCTGGGAAGCCAGTCTCTATGCCTGGAACTAATCTGAATATCGGAATGGACTTATGGAATGCATCCTCTGCGGGTGCTGGAGCTGCAAAAGTGAGAGGAAATCCGTCAGGTCCTCCATCAGCCGGTGGTGCTGAGCATTGGATTCAAGACGAACGTGAACTGAAAAGGCAGAAAAGAAAGCAATCAAATAGGGAGTCAGCTAGGAGGTCAAGATTACGGAAGCAGGCAGAGTGTGAAGAGCTACAAGCAAGGGTAGAGGCTTTGAGCAATGAGAATCATAGCCTCAGAGAAGAGCTGCACAGGCTTTCTGAGGAATGCGAGAAACTTACATCTGAGAATGCTAATATAAAGGAAGAACTGACACGAGTGTGCGGACCCGATTTGGTAGCAAACCTTGAGCAGCAGCCTGGTGGTGGTGAGGGCAACAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

316

Amino Acids

32.89

Weight (kDa)

5.94

Isoelectric Point (pI)

51.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36730 AT4G36730
fragaria_vesca	FvH4_1g13880 FvH4_1g13880 FvH4_1g13880 FvH4_1g13880 FvH4_1g13880
malus_domestica	MD15G1266700.v1.1
prunus_persica	Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1
pyrus_communis	pycom02g11970 pycom15g23210
rosa_chinensis	RchiOBHm_Chr2g0102191
rosa_laevigata	RLG00000017087 RLG00000017137
rosa_multiflora	Rmu_co8040408.1_g000001 Rmu_co8264951.1_g000001 Rmu_sc0010937.1_g000010 Rmu_sc0011183.1_g000011 Rmu_sc0020365.1_g000005
rosa_roxburghii	Rroxscaffold_2G00140700 Rroxscaffold_2G00140710 Rroxscaffold_2G00141220
rosa_rugosa	Rorug02G0105200 Rorug02G0105300 Rorug02G0105300 Rorug02G0105300
rosa_samantha	Rh2AG153400 Rh2BG159300 Rh2CG158800 Rh2DG159000
rosa_wichuraiana	Rw2G011980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	278
AccBSI	CCGCTC	1 cut(s)	247
AciI	CCGC	6 cut(s)	32, 110, 247, 464, 587, 888
AcoI	YGGCCR	1 cut(s)	138
AcuI	CTGAAG	2 cut(s)	315, 495
AfaI	GTAC	1 cut(s)	28
AfiI	CCNNNNNNNGG	6 cut(s)	84, 116, 155, 217, 638, 929
AgsI	TTSAA	2 cut(s)	255, 662
AjnI	CCWGG	6 cut(s)	19, 151, 190, 517, 538, 922
AleI	CACNNNNGTG	1 cut(s)	883
AloI	GAACNNNNNNTCC	4 cut(s)	111, 112, 143, 144
AluBI	AGCT	6 cut(s)	447, 599, 716, 757, 811, 945
AluI	AGCT	6 cut(s)	447, 599, 716, 757, 811, 945
Alw26I	GTCTC	1 cut(s)	535
AlwNI	CAGNNNCTG	2 cut(s)	284, 518
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	4 cut(s)	599, 811, 916, 919
ArsI	GACNNNNNNTTYG	2 cut(s)	695, 727
AspLEI	GCGC	2 cut(s)	197, 353
AspS9I	GGNCC	4 cut(s)	17, 230, 626, 890
AsuC2I	CCSGG	1 cut(s)	212
AsuHPI	GGTGA	3 cut(s)	193, 377, 944
AvaII	GGWCC	4 cut(s)	17, 230, 626, 890
BanII	GRGCYC	1 cut(s)	94
BauI	CACGAG	1 cut(s)	879
BbvI	GCAGC	4 cut(s)	586, 798, 928, 931
BccI	CCATC	4 cut(s)	341, 386, 461, 640
BcgI	CGANNNNNNTGC	2 cut(s)	389, 423
BciT130I	CCWGG	6 cut(s)	21, 153, 192, 519, 540, 924
BciVI	GTATCC	1 cut(s)	156
BcnI	CCSGG	1 cut(s)	212
BcoDI	GTCTC	1 cut(s)	535
BfaI	CTAG	1 cut(s)	717
BfmI	CTRYAG	2 cut(s)	276, 285
BfoI	RGCGCY	1 cut(s)	354
BfuAI	ACCTGC	1 cut(s)	278
BfuI	GTATCC	1 cut(s)	156
BisI	GCNGC	5 cut(s)	110, 600, 812, 917, 920
BlpI	GCTNAGC	1 cut(s)	648
BlsI	GCNGC	5 cut(s)	111, 601, 813, 918, 921
Bme1390I	CCNGG	7 cut(s)	21, 153, 192, 212, 519, 540, 924
Bme18I	GGWCC	4 cut(s)	17, 230, 626, 890
BmgT120I	GGNCC	4 cut(s)	17, 230, 626, 890
BmiI	GGNNCC	3 cut(s)	91, 231, 892
BmrFI	CCNGG	7 cut(s)	21, 153, 192, 212, 519, 540, 924
BmrI	ACTGGG	2 cut(s)	168, 501
BmsI	GCATC	4 cut(s)	96, 106, 447, 587
BmuI	ACTGGG	2 cut(s)	168, 501
BpmI	CTGGAG	4 cut(s)	42, 108, 135, 615
Bpu1102I	GCTNAGC	1 cut(s)	648
BpuEI	CTTGAG	1 cut(s)	932
BpuMI	CCSGG	1 cut(s)	212
BsaJI	CCNNGG	4 cut(s)	190, 210, 267, 518
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bsc4I	CCNNNNNNNGG	6 cut(s)	84, 116, 155, 217, 638, 929
Bse118I	RCCGGY	1 cut(s)	638
Bse1I	ACTGG	4 cut(s)	125, 174, 496, 527
Bse3DI	GCAATG	1 cut(s)	790
BseBI	CCWGG	6 cut(s)	21, 153, 192, 519, 540, 924
BseDI	CCNNGG	4 cut(s)	190, 210, 267, 518
BseGI	GGATG	5 cut(s)	97, 169, 397, 472, 578
BseLI	CCNNNNNNNGG	6 cut(s)	84, 116, 155, 217, 638, 929
BseMI	GCAATG	1 cut(s)	790
BseMII	CTCAG	4 cut(s)	639, 814, 816, 840
BseNI	ACTGG	4 cut(s)	125, 174, 496, 527
BseXI	GCAGC	4 cut(s)	586, 798, 928, 931
BseYI	CCCAGC	1 cut(s)	93
BsgI	GTGCAG	1 cut(s)	797
BshFI	GGCC	1 cut(s)	140
BsiSI	CCGG	3 cut(s)	137, 212, 639
BslFI	GGGAC	1 cut(s)	508
BslI	CCNNNNNNNGG	6 cut(s)	84, 116, 155, 217, 638, 929
BsmAI	GTCTC	1 cut(s)	535
BsmFI	GGGAC	1 cut(s)	508
BsmI	GAATGC	3 cut(s)	580, 836, 859
BsnI	GGCC	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	94
Bsp1720I	GCTNAGC	1 cut(s)	648
BspACI	CCGC	6 cut(s)	32, 110, 247, 464, 587, 888
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	4 cut(s)	640, 813, 817, 841
BspLI	GGNNCC	3 cut(s)	91, 231, 892
BspMAI	CTGCAG	2 cut(s)	280, 289
BspMI	ACCTGC	1 cut(s)	278
BspQI	GCTCTTC	2 cut(s)	747, 801
BsrBI	CCGCTC	1 cut(s)	247
BsrDI	GCAATG	1 cut(s)	790
BsrFI	RCCGGY	1 cut(s)	638
BsrI	ACTGG	4 cut(s)	125, 174, 496, 527
BssAI	RCCGGY	1 cut(s)	638
BssECI	CCNNGG	4 cut(s)	190, 210, 267, 518
BssSI	CACGAG	1 cut(s)	879
BssT1I	CCWWGG	1 cut(s)	267
Bst2BI	CACGAG	1 cut(s)	879
Bst2UI	CCWGG	6 cut(s)	21, 153, 192, 519, 540, 924
Bst4CI	ACNGT	1 cut(s)	55
Bst6I	CTCTTC	2 cut(s)	747, 801
BstAPI	GCANNNNNTGC	2 cut(s)	284, 584
BstC8I	GCNNGC	4 cut(s)	6, 249, 462, 741
BstDEI	CTNAG	4 cut(s)	648, 800, 825, 849
BstF5I	GGATG	5 cut(s)	97, 169, 397, 472, 578
BstH2I	RGCGCY	1 cut(s)	354
BstHHI	GCGC	2 cut(s)	197, 353
BstMAI	GTCTC	1 cut(s)	535
BstMWI	GCNNNNNNNGC	8 cut(s)	284, 293, 470, 523, 584, 599, 644, 817
BstNI	CCWGG	6 cut(s)	21, 153, 192, 519, 540, 924
BstSCI	CCNGG	7 cut(s)	19, 151, 190, 210, 517, 538, 922
BstSFI	CTRYAG	2 cut(s)	276, 285
BstV1I	GCAGC	4 cut(s)	586, 798, 928, 931
BsuI	GTATCC	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	140
BtgZI	GCGATG	1 cut(s)	414
BtsCI	GGATG	5 cut(s)	97, 169, 397, 472, 578
BtsIMutI	CAGTG	3 cut(s)	51, 489, 519
BveI	ACCTGC	1 cut(s)	278
Cac8I	GCNNGC	4 cut(s)	6, 249, 462, 741
CaiI	CAGNNNCTG	2 cut(s)	284, 518
CfoI	GCGC	2 cut(s)	197, 353
Cfr10I	RCCGGY	1 cut(s)	638
Cfr13I	GGNCC	4 cut(s)	17, 230, 626, 890
Csp6I	GTAC	1 cut(s)	27
CspCI	CAANNNNNGTGG	2 cut(s)	37, 72
CviAII	CATG	1 cut(s)	142
CviQI	GTAC	1 cut(s)	27
DdeI	CTNAG	4 cut(s)	648, 800, 825, 849
EaeI	YGGCCR	1 cut(s)	138
Eam1104I	CTCTTC	2 cut(s)	747, 801
EarI	CTCTTC	2 cut(s)	747, 801
EciI	GGCGGA	1 cut(s)	21
Eco130I	CCWWGG	1 cut(s)	267
Eco24I	GRGCYC	1 cut(s)	94
Eco47I	GGWCC	4 cut(s)	17, 230, 626, 890
Eco57I	CTGAAG	2 cut(s)	315, 495
EcoO109I	RGGNCCY	2 cut(s)	230, 626
EcoRII	CCWGG	6 cut(s)	19, 151, 190, 517, 538, 922
EcoT14I	CCWWGG	1 cut(s)	267
EcoT22I	ATGCAT	1 cut(s)	580
EcoT38I	GRGCYC	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	1 cut(s)	145
FalI	AAGNNNNNCTT	2 cut(s)	431, 463
FaqI	GGGAC	1 cut(s)	508
FatI	CATG	1 cut(s)	141
FauI	CCCGC	2 cut(s)	240, 580
FauNDI	CATATG	1 cut(s)	115
Fnu4HI	GCNGC	5 cut(s)	110, 600, 812, 917, 920
FokI	GGATG	5 cut(s)	84, 156, 404, 479, 565
FriOI	GRGCYC	1 cut(s)	94
Fsp4HI	GCNGC	5 cut(s)	110, 600, 812, 917, 920
FspBI	CTAG	1 cut(s)	717
GlaI	GCGC	2 cut(s)	196, 352
GluI	GCNGC	5 cut(s)	110, 600, 812, 917, 920
GsaI	CCCAGC	1 cut(s)	97
GsuI	CTGGAG	4 cut(s)	42, 108, 135, 615
HaeII	RGCGCY	1 cut(s)	354
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	3 cut(s)	137, 212, 639
HhaI	GCGC	2 cut(s)	197, 353
Hin1II	CATG	1 cut(s)	145
Hin6I	GCGC	2 cut(s)	195, 351
HinP1I	GCGC	2 cut(s)	195, 351
HindIII	AAGCTT	1 cut(s)	445
HinfI	GANTC	3 cut(s)	658, 710, 790
HpaII	CCGG	3 cut(s)	137, 212, 639
HphI	GGTGA	3 cut(s)	193, 377, 944
Hpy166II	GTNNAC	1 cut(s)	674
Hpy188I	TCNGA	6 cut(s)	391, 552, 560, 803, 826, 850
Hpy188III	TCNNGA	5 cut(s)	233, 339, 419, 662, 726
Hpy8I	GTNNAC	1 cut(s)	674
HpyAV	CCTTC	3 cut(s)	215, 220, 433
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4IV	ACGT	1 cut(s)	670
HpyCH4V	TGCA	8 cut(s)	4, 278, 287, 431, 479, 578, 602, 814
HpyF10VI	GCNNNNNNNGC	8 cut(s)	284, 293, 470, 523, 584, 599, 644, 817
HpyF3I	CTNAG	4 cut(s)	648, 800, 825, 849
HpySE526I	ACGT	1 cut(s)	670
Hsp92II	CATG	1 cut(s)	145
HspAI	GCGC	2 cut(s)	195, 351
LguI	GCTCTTC	2 cut(s)	747, 801
LmnI	GCTCC	2 cut(s)	89, 596
Lsp1109I	GCAGC	4 cut(s)	586, 798, 928, 931
LweI	GCATC	4 cut(s)	96, 106, 447, 587
MaeI	CTAG	1 cut(s)	717
MaeII	ACGT	1 cut(s)	670
MbiI	CCGCTC	1 cut(s)	247
MboII	GAAGA	3 cut(s)	764, 818, 881
MhlI	GDGCHC	1 cut(s)	94
MlyI	GAGTC	1 cut(s)	719
MmeI	TCCRAC	1 cut(s)	198
Mph1103I	ATGCAT	1 cut(s)	580
MslI	CAYNNNNRTG	1 cut(s)	883
MspA1I	CMGCKG	1 cut(s)	945
MspI	CCGG	3 cut(s)	137, 212, 639
MspR9I	CCNGG	7 cut(s)	21, 153, 192, 212, 519, 540, 924
Mva1269I	GAATGC	3 cut(s)	580, 836, 859
MvaI	CCWGG	6 cut(s)	21, 153, 192, 519, 540, 924
MwoI	GCNNNNNNNGC	8 cut(s)	284, 293, 470, 523, 584, 599, 644, 817
NciI	CCSGG	1 cut(s)	212
NdeI	CATATG	1 cut(s)	115
NlaIII	CATG	1 cut(s)	145
NlaIV	GGNNCC	3 cut(s)	91, 231, 892
NsiI	ATGCAT	1 cut(s)	580
OliI	CACNNNNGTG	1 cut(s)	883
PciSI	GCTCTTC	2 cut(s)	747, 801
PctI	GAATGC	3 cut(s)	580, 836, 859
PfeI	GAWTC	2 cut(s)	658, 790
PfoI	TCCNGGA	1 cut(s)	19
PkrI	GCNGC	5 cut(s)	111, 601, 813, 918, 921
PleI	GAGTC	1 cut(s)	718
PpsI	GAGTC	1 cut(s)	718
PpuMI	RGGWCCY	2 cut(s)	230, 626
Psp5II	RGGWCCY	2 cut(s)	230, 626
Psp6I	CCWGG	6 cut(s)	19, 151, 190, 517, 538, 922
PspFI	CCCAGC	1 cut(s)	93
PspGI	CCWGG	6 cut(s)	19, 151, 190, 517, 538, 922
PspN4I	GGNNCC	3 cut(s)	91, 231, 892
PspPI	GGNCC	4 cut(s)	17, 230, 626, 890
PspPPI	RGGWCCY	2 cut(s)	230, 626
PsrI	GAACNNNNNNTAC	2 cut(s)	367, 399
PstI	CTGCAG	2 cut(s)	280, 289
PstNI	CAGNNNCTG	2 cut(s)	284, 518
PvuII	CAGCTG	1 cut(s)	945
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
RseI	CAYNNNNRTG	1 cut(s)	883
SapI	GCTCTTC	2 cut(s)	747, 801
SatI	GCNGC	5 cut(s)	110, 600, 812, 917, 920
Sau96I	GGNCC	4 cut(s)	17, 230, 626, 890
SchI	GAGTC	1 cut(s)	719
ScrFI	CCNGG	7 cut(s)	21, 153, 192, 212, 519, 540, 924
SduI	GDGCHC	1 cut(s)	94
SfaNI	GCATC	4 cut(s)	96, 106, 447, 587
SfcI	CTRYAG	2 cut(s)	276, 285
SinI	GGWCC	4 cut(s)	17, 230, 626, 890
SmiMI	CAYNNNNRTG	1 cut(s)	883
SmlI	CTYRAG	1 cut(s)	911
SmoI	CTYRAG	1 cut(s)	911
SsiI	CCGC	6 cut(s)	32, 110, 247, 464, 587, 888
SspMI	CTAG	1 cut(s)	717
StyD4I	CCNGG	7 cut(s)	19, 151, 190, 210, 517, 538, 922
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	55
TaiI	ACGT	1 cut(s)	673
TauI	GCSGC	1 cut(s)	112
TfiI	GAWTC	2 cut(s)	658, 790
TscAI	CASTG	3 cut(s)	58, 496, 519
TseI	GCWGC	4 cut(s)	599, 811, 916, 919
TspDTI	ATGAA	1 cut(s)	375
TspGWI	ACGGA	2 cut(s)	609, 748
TspRI	CASTG	3 cut(s)	58, 496, 519
VpaK11BI	GGWCC	4 cut(s)	17, 230, 626, 890
XspI	CTAG	1 cut(s)	717
Zsp2I	ATGCAT	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.