Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003368

Physical Location & Seq

Genomic Coordinates Forward (+)

79510129 .. 79512973

Gene Structure 2845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00141220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGTGGGGAGCCCAGCATCCTATGATGCCGCCTTATGGAACTCCTGTTCCGTACCCTGCTATGTATCCTCCAGGTGGAGTTTATGCTCATCCGGGTATGGTCACGACTCCTACTTCAGTACCACCAACAAATCCAGAGTCGGAAGCGAAGGGCACAGATGGGAAAGAGCGAGCTTCAGCCAAAAAACCCAAGGGAGCTGCAGGAAATACAGTAAAGGCTGGGGAGAGTGGAAAAGCAACTTCTGGTTCTGGAAATGATGGAGCTTCACAAAGATTATTTATTGATGCTGTACCCAGTCTGACTGTAAACTTTCTCGTTAACAGTGCTGAAAGTGGCAGCGAGGGTTCATCAGATGGAAACGAGGAGAATGGTAACCACCAGATATGTGAGTATGGTGCAAACAAGAAGGGCAGCTTTGACAAGATGCTTGCAGATGGAGCAAATGCACAAAATAACACAGCTTTAGTGCCAGGGAAGCCTGTAGTTTCTGTGCCTGCAACTAGTCTGAATATGGGAGTGGACTTGTGGAATGCATCCCCCGCTGGTGCTGGAACTGCAAAAATGAGAGGAAATCAATCTGGAGCCCCATCAGCTGTCGGTGGTGACCATTGGACTCAGGATGAATGGGAACTGAAAAGACAGAAAAGGAAGCAGTCAAATAGGAATAGGGAGTCTGCTAGGAGGCGGAGTGTGAAGAGCTACAAAAAAGTTGTACAGGGACTGACCAATGAGAATCATGGCCTTAAAGATGAGCTGCATGCAAAGGCTCTCCCAGGAATGCGAGAAGCTCGTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

265

Amino Acids

27.85

Weight (kDa)

9.4

Isoelectric Point (pI)

37.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFMR	PF07777	1 - 33	3.9e-11	G-box binding protein MFMR

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36730 AT4G36730
fragaria_vesca	FvH4_1g13880 FvH4_1g13880 FvH4_1g13880 FvH4_1g13880 FvH4_1g13880
malus_domestica	MD15G1266700.v1.1
prunus_persica	Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1
pyrus_communis	pycom02g11970 pycom15g23210
rosa_chinensis	RchiOBHm_Chr2g0102191
rosa_laevigata	RLG00000017087 RLG00000017137
rosa_multiflora	Rmu_co8040408.1_g000001 Rmu_co8264951.1_g000001 Rmu_sc0010937.1_g000010 Rmu_sc0011183.1_g000011 Rmu_sc0020365.1_g000005
rosa_roxburghii	Rroxscaffold_2G00140700 Rroxscaffold_2G00140710 Rroxscaffold_2G00141220
rosa_rugosa	Rorug02G0105200 Rorug02G0105300 Rorug02G0105300 Rorug02G0105300
rosa_samantha	Rh2AG153400 Rh2BG159300 Rh2CG158800 Rh2DG159000
rosa_wichuraiana	Rw2G011980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	29, 540, 685
AcuI	CTGAAG	2 cut(s)	99, 159
AfaI	GTAC	4 cut(s)	53, 120, 291, 714
AfiI	CCNNNNNNNGG	2 cut(s)	35, 74
AhlI	ACTAGT	1 cut(s)	500
AjnI	CCWGG	3 cut(s)	70, 469, 772
AloI	GAACNNNNNNTCC	4 cut(s)	30, 31, 62, 63
AluBI	AGCT	9 cut(s)	173, 197, 263, 414, 461, 593, 699, 754, 788
AluI	AGCT	9 cut(s)	173, 197, 263, 414, 461, 593, 699, 754, 788
AlwNI	CAGNNNCTG	1 cut(s)	721
AoxI	GGCC	1 cut(s)	739
ApeKI	GCWGC	4 cut(s)	197, 336, 411, 754
ArsI	GACNNNNNNTTYG	2 cut(s)	122, 154
AsuC2I	CCSGG	1 cut(s)	93
AsuHPI	GGTGA	1 cut(s)	614
BaeGI	GKGCMC	1 cut(s)	155
BaeI	ACNNNNGTAYC	2 cut(s)	102, 135
BanII	GRGCYC	2 cut(s)	13, 586
BauI	CACGAG	1 cut(s)	789
BbvI	GCAGC	4 cut(s)	184, 348, 423, 741
BccI	CCATC	5 cut(s)	152, 251, 347, 428, 595
BciT130I	CCWGG	3 cut(s)	72, 471, 774
BciVI	GTATCC	1 cut(s)	75
BcnI	CCSGG	1 cut(s)	93
BcuI	ACTAGT	1 cut(s)	500
BfaI	CTAG	2 cut(s)	501, 678
BfmI	CTRYAG	2 cut(s)	198, 480
BfuI	GTATCC	1 cut(s)	75
BisI	GCNGC	5 cut(s)	29, 198, 337, 412, 755
BlsI	GCNGC	5 cut(s)	30, 199, 338, 413, 756
Bme1390I	CCNGG	4 cut(s)	72, 93, 471, 774
BmiI	GGNNCC	2 cut(s)	10, 583
BmrFI	CCNGG	4 cut(s)	72, 93, 471, 774
BmrI	ACTGGG	1 cut(s)	288
BmsI	GCATC	5 cut(s)	15, 25, 274, 414, 542
BmuI	ACTGGG	1 cut(s)	288
BpmI	CTGGAG	2 cut(s)	54, 600
BpuMI	CCSGG	1 cut(s)	93
BsaJI	CCNNGG	3 cut(s)	189, 470, 772
BsaXI	ACNNNNNCTCC	2 cut(s)	673, 703
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 74
Bse1I	ACTGG	1 cut(s)	294
BseBI	CCWGG	3 cut(s)	72, 471, 774
BseDI	CCNNGG	3 cut(s)	189, 470, 772
BseGI	GGATG	4 cut(s)	16, 88, 533, 625
BseLI	CCNNNNNNNGG	2 cut(s)	35, 74
BseMII	CTCAG	1 cut(s)	629
BseNI	ACTGG	1 cut(s)	294
BseRI	GAGGAG	1 cut(s)	377
BseSI	GKGCMC	1 cut(s)	155
BseXI	GCAGC	4 cut(s)	184, 348, 423, 741
BseYI	CCCAGC	2 cut(s)	12, 218
BshFI	GGCC	1 cut(s)	741
BsiSI	CCGG	1 cut(s)	92
BslFI	GGGAC	1 cut(s)	732
BslI	CCNNNNNNNGG	2 cut(s)	35, 74
BsmFI	GGGAC	1 cut(s)	732
BsmI	GAATGC	2 cut(s)	535, 783
BsnI	GGCC	1 cut(s)	741
Bsp1286I	GDGCHC	3 cut(s)	13, 155, 586
Bsp1407I	TGTACA	1 cut(s)	712
BspACI	CCGC	3 cut(s)	29, 540, 685
BspANI	GGCC	1 cut(s)	741
BspCNI	CTCAG	1 cut(s)	628
BspLI	GGNNCC	2 cut(s)	10, 583
BspMAI	CTGCAG	1 cut(s)	202
BspQI	GCTCTTC	1 cut(s)	689
BsrGI	TGTACA	1 cut(s)	712
BsrI	ACTGG	1 cut(s)	294
BssECI	CCNNGG	3 cut(s)	189, 470, 772
BssSI	CACGAG	1 cut(s)	789
BssT1I	CCWWGG	1 cut(s)	189
Bst2BI	CACGAG	1 cut(s)	789
Bst2UI	CCWGG	3 cut(s)	72, 471, 774
Bst4CI	ACNGT	3 cut(s)	211, 304, 323
Bst6I	CTCTTC	1 cut(s)	689
BstAUI	TGTACA	1 cut(s)	712
BstC8I	GCNNGC	4 cut(s)	171, 429, 495, 759
BstDEI	CTNAG	1 cut(s)	615
BstEII	GGTNACC	2 cut(s)	371, 602
BstF5I	GGATG	4 cut(s)	16, 88, 533, 625
BstMWI	GCNNNNNNNGC	5 cut(s)	437, 475, 539, 554, 590
BstNI	CCWGG	3 cut(s)	72, 471, 774
BstNSI	RCATGY	1 cut(s)	761
BstPI	GGTNACC	2 cut(s)	371, 602
BstSCI	CCNGG	4 cut(s)	70, 91, 469, 772
BstSFI	CTRYAG	2 cut(s)	198, 480
BstSLI	GKGCMC	1 cut(s)	155
BstV1I	GCAGC	4 cut(s)	184, 348, 423, 741
BsuI	GTATCC	1 cut(s)	75
BsuRI	GGCC	1 cut(s)	741
BtsCI	GGATG	4 cut(s)	16, 88, 533, 625
BtsIMutI	CAGTG	1 cut(s)	328
Cac8I	GCNNGC	4 cut(s)	171, 429, 495, 759
CaiI	CAGNNNCTG	1 cut(s)	721
Csp6I	GTAC	4 cut(s)	52, 119, 290, 713
CviAII	CATG	2 cut(s)	737, 758
CviQI	GTAC	4 cut(s)	52, 119, 290, 713
DdeI	CTNAG	1 cut(s)	615
Eam1104I	CTCTTC	1 cut(s)	689
EarI	CTCTTC	1 cut(s)	689
EciI	GGCGGA	1 cut(s)	700
Eco130I	CCWWGG	1 cut(s)	189
Eco24I	GRGCYC	2 cut(s)	13, 586
Eco57I	CTGAAG	2 cut(s)	99, 159
Eco91I	GGTNACC	2 cut(s)	371, 602
EcoO65I	GGTNACC	2 cut(s)	371, 602
EcoRII	CCWGG	3 cut(s)	70, 469, 772
EcoT14I	CCWWGG	1 cut(s)	189
EcoT22I	ATGCAT	1 cut(s)	535
EcoT38I	GRGCYC	2 cut(s)	13, 586
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	2 cut(s)	740, 761
FalI	AAGNNNNNCTT	2 cut(s)	398, 430
FaqI	GGGAC	1 cut(s)	732
FatI	CATG	2 cut(s)	736, 757
FauI	CCCGC	1 cut(s)	547
Fnu4HI	GCNGC	5 cut(s)	29, 198, 337, 412, 755
FokI	GGATG	4 cut(s)	3, 75, 520, 632
FriOI	GRGCYC	2 cut(s)	13, 586
Fsp4HI	GCNGC	5 cut(s)	29, 198, 337, 412, 755
FspBI	CTAG	2 cut(s)	501, 678
GluI	GCNGC	5 cut(s)	29, 198, 337, 412, 755
GsaI	CCCAGC	2 cut(s)	16, 222
GsuI	CTGGAG	2 cut(s)	54, 600
HaeIII	GGCC	1 cut(s)	741
HapII	CCGG	1 cut(s)	92
Hin1II	CATG	2 cut(s)	740, 761
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HinfI	GANTC	5 cut(s)	106, 137, 613, 671, 733
HpaI	GTTAAC	1 cut(s)	319
HpaII	CCGG	1 cut(s)	92
HphI	GGTGA	1 cut(s)	614
Hpy166II	GTNNAC	3 cut(s)	307, 319, 520
Hpy188I	TCNGA	5 cut(s)	142, 300, 352, 507, 797
Hpy188III	TCNNGA	5 cut(s)	103, 134, 249, 579, 617
Hpy8I	GTNNAC	3 cut(s)	307, 319, 520
HpyAV	CCTTC	2 cut(s)	142, 400
HpyCH4III	ACNGT	3 cut(s)	211, 304, 323
HpyCH4V	TGCA	9 cut(s)	200, 398, 431, 446, 497, 533, 557, 757, 761
HpyF10VI	GCNNNNNNNGC	5 cut(s)	437, 475, 539, 554, 590
HpyF3I	CTNAG	1 cut(s)	615
Hsp92II	CATG	2 cut(s)	740, 761
KspAI	GTTAAC	1 cut(s)	319
LguI	GCTCTTC	1 cut(s)	689
LmnI	GCTCC	5 cut(s)	8, 194, 260, 437, 581
Lsp1109I	GCAGC	4 cut(s)	184, 348, 423, 741
LweI	GCATC	5 cut(s)	15, 25, 274, 414, 542
MaeI	CTAG	2 cut(s)	501, 678
MaeIII	GTNAC	3 cut(s)	100, 371, 602
MboII	GAAGA	1 cut(s)	706
MhlI	GDGCHC	3 cut(s)	13, 155, 586
MlyI	GAGTC	4 cut(s)	100, 146, 607, 680
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	5 cut(s)	78, 334, 355, 560, 675
Mph1103I	ATGCAT	1 cut(s)	535
MseI	TTAA	2 cut(s)	318, 744
MspA1I	CMGCKG	2 cut(s)	542, 593
MspI	CCGG	1 cut(s)	92
MspR9I	CCNGG	4 cut(s)	72, 93, 471, 774
Mva1269I	GAATGC	2 cut(s)	535, 783
MvaI	CCWGG	3 cut(s)	72, 471, 774
MwoI	GCNNNNNNNGC	5 cut(s)	437, 475, 539, 554, 590
NciI	CCSGG	1 cut(s)	93
NlaIII	CATG	2 cut(s)	740, 761
NlaIV	GGNNCC	2 cut(s)	10, 583
NmuCI	GTSAC	2 cut(s)	100, 602
NsiI	ATGCAT	1 cut(s)	535
NspI	RCATGY	1 cut(s)	761
PaeI	GCATGC	1 cut(s)	761
PciSI	GCTCTTC	1 cut(s)	689
PctI	GAATGC	2 cut(s)	535, 783
PfeI	GAWTC	1 cut(s)	733
PkrI	GCNGC	5 cut(s)	30, 199, 338, 413, 756
PleI	GAGTC	4 cut(s)	100, 145, 607, 679
PpsI	GAGTC	4 cut(s)	100, 145, 607, 679
Psp6I	CCWGG	3 cut(s)	70, 469, 772
PspEI	GGTNACC	2 cut(s)	371, 602
PspFI	CCCAGC	2 cut(s)	12, 218
PspGI	CCWGG	3 cut(s)	70, 469, 772
PspN4I	GGNNCC	2 cut(s)	10, 583
PstI	CTGCAG	1 cut(s)	202
PstNI	CAGNNNCTG	1 cut(s)	721
PvuII	CAGCTG	1 cut(s)	593
RsaI	GTAC	4 cut(s)	53, 120, 291, 714
RsaNI	GTAC	4 cut(s)	52, 119, 290, 713
SapI	GCTCTTC	1 cut(s)	689
SaqAI	TTAA	2 cut(s)	318, 744
SatI	GCNGC	5 cut(s)	29, 198, 337, 412, 755
SchI	GAGTC	4 cut(s)	100, 146, 607, 680
ScrFI	CCNGG	4 cut(s)	72, 93, 471, 774
SduI	GDGCHC	3 cut(s)	13, 155, 586
SfaNI	GCATC	5 cut(s)	15, 25, 274, 414, 542
SfcI	CTRYAG	2 cut(s)	198, 480
SpeI	ACTAGT	1 cut(s)	500
SphI	GCATGC	1 cut(s)	761
SsiI	CCGC	3 cut(s)	29, 540, 685
SspMI	CTAG	2 cut(s)	501, 678
StyD4I	CCNGG	4 cut(s)	70, 91, 469, 772
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	3 cut(s)	211, 304, 323
TatI	WGTACW	1 cut(s)	712
TauI	GCSGC	1 cut(s)	31
TfiI	GAWTC	1 cut(s)	733
Tru1I	TTAA	2 cut(s)	318, 744
Tru9I	TTAA	2 cut(s)	318, 744
TscAI	CASTG	1 cut(s)	328
TseFI	GTSAC	2 cut(s)	100, 602
TseI	GCWGC	4 cut(s)	197, 336, 411, 754
Tsp45I	GTSAC	2 cut(s)	100, 602
TspDTI	ATGAA	2 cut(s)	336, 636
TspGWI	ACGGA	1 cut(s)	39
TspRI	CASTG	1 cut(s)	328
XceI	RCATGY	1 cut(s)	761
XspI	CTAG	2 cut(s)	501, 678
Zsp2I	ATGCAT	1 cut(s)	535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.