Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003368

Physical Location & Seq

Genomic Coordinates Reverse (-)

13442553 .. 13447473

Gene Structure 4921 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG159000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGGGACAGGGGAAGAGGGCACACCCTCTAAGCCTTCCAAACAAGCTTCTACAGCTCAGGAAATACCTACACAGCCTTCGTATCCTGATTGGTCCAGCTCTATGCAGGCTTATTATGGTGCTGGAGCTGCTCCACCGCCCTTTTTCGCTTCCTCTGTTGCTTCACCAGCACCGCACCCATATATGTGGGGTGCCCAGCATCCTATGATGCCTCCTTATGGAACTCCTGTTCCGTACCCTGCTATATATCCTCCAGGTGGAGTTTATGCTCATCCGGGTATGGTCACGACTCCTACTTCAGTACCACCAACAAATCCAGAGTCGGAAGGGAAGGGCGCAGATGGGAAAGAGCGAGCTTCAGCCAAAAAACCCAAGGGAGCTGCAGGAAATACAGTTAAGGCTGGGGAGAGTGGAAAAGCAACTTCTGGTTCTGGAAATGATGGAGCTTCACAAAGTGCTGAAAGTGGCAGCGAGGGTTCATCAGATGGAAGCGAGGAGAATGGTAACCACCAGGAGTATGGTGCAAACAAAAAGGGAAGCTTTGACAAGATGCTTGCAGATGGAGCAAATGCACAAAATAACACAGCTTTAGTGCCTGGGAAGCCTGTAGTTTCTATGCCTGCAACTAGTCTGAATATGGGAATGGACTTGTGGAATGCATCCCCCGCTGGTGCAGGAACTGCAAAAATGAGAGGAAATCAATCTGGAGCCCCATCAGCTGTCGGTGGTGACCATTGGATTCAGGATGAACGGGAACTGAAAAGACAGAAAAGGAAGCAGTCAAATAGGGAGTCTGCTAGGAGGTCAAGATTGCGGAAGCAGGCGGAGTGTGAAGAGCTACAAAAAAGTGTACAGGGACTGACCAATGAGAATCATGGCCTTAAAGATGAGCTGCAAAGGCTCTCCCAGGAATGCGAGAAGCTTGTGTCTGAAAATACTTCTATAAAGGTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

318

Amino Acids

33.32

Weight (kDa)

7.02

Isoelectric Point (pI)

54.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFMR	PF07777	1 - 94	4.7e-34	G-box binding protein MFMR
bZIP_1	PF00170	250 - 312	1.2e-20	bZIP transcription factor
bZIP_2	PF07716	252 - 304	1.3e-08	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36730 AT4G36730
fragaria_vesca	FvH4_1g13880 FvH4_1g13880 FvH4_1g13880 FvH4_1g13880 FvH4_1g13880
malus_domestica	MD15G1266700.v1.1
prunus_persica	Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1
pyrus_communis	pycom02g11970 pycom15g23210
rosa_chinensis	RchiOBHm_Chr2g0102191
rosa_laevigata	RLG00000017087 RLG00000017137
rosa_multiflora	Rmu_co8040408.1_g000001 Rmu_co8264951.1_g000001 Rmu_sc0010937.1_g000010 Rmu_sc0011183.1_g000011 Rmu_sc0020365.1_g000005
rosa_roxburghii	Rroxscaffold_2G00140700 Rroxscaffold_2G00140710 Rroxscaffold_2G00141220
rosa_rugosa	Rorug02G0105200 Rorug02G0105300 Rorug02G0105300 Rorug02G0105300
rosa_samantha	Rh2AG153400 Rh2BG159300 Rh2CG158800 Rh2DG159000
rosa_wichuraiana	Rw2G011980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	191
AciI	CCGC	5 cut(s)	137, 173, 666, 814, 824
AcuI	CTGAAG	2 cut(s)	282, 342
AdeI	CACNNNGTG	1 cut(s)	455
AfaI	GTAC	3 cut(s)	236, 303, 852
AfiI	CCNNNNNNNGG	2 cut(s)	218, 257
AhlI	ACTAGT	1 cut(s)	626
AjnI	CCWGG	4 cut(s)	253, 510, 595, 906
AloI	GAACNNNNNNTCC	4 cut(s)	213, 214, 245, 246
AlwNI	CAGNNNCTG	2 cut(s)	680, 859
AoxI	GGCC	1 cut(s)	877
ApeKI	GCWGC	4 cut(s)	128, 380, 468, 892
ArsI	GACNNNNNNTTYG	4 cut(s)	305, 337, 776, 808
AspLEI	GCGC	1 cut(s)	338
AspS9I	GGNCC	1 cut(s)	93
AsuC2I	CCSGG	1 cut(s)	276
AsuHPI	GGTGA	2 cut(s)	156, 740
AvaII	GGWCC	1 cut(s)	93
BaeGI	GKGCMC	2 cut(s)	23, 196
BaeI	ACNNNNGTAYC	2 cut(s)	285, 318
BanI	GGYRCC	1 cut(s)	191
BanII	GRGCYC	1 cut(s)	712
BbvI	GCAGC	4 cut(s)	115, 367, 480, 879
BccI	CCATC	5 cut(s)	335, 434, 479, 554, 721
BciT130I	CCWGG	4 cut(s)	255, 512, 597, 908
BciVI	GTATCC	1 cut(s)	93
BcnI	CCSGG	1 cut(s)	276
BcuI	ACTAGT	1 cut(s)	626
BfaI	CTAG	2 cut(s)	627, 798
BfmI	CTRYAG	3 cut(s)	51, 381, 606
BfuI	GTATCC	1 cut(s)	93
BisI	GCNGC	4 cut(s)	129, 381, 469, 893
BlsI	GCNGC	4 cut(s)	130, 382, 470, 894
Bme1390I	CCNGG	5 cut(s)	255, 276, 512, 597, 908
Bme18I	GGWCC	1 cut(s)	93
BmgT120I	GGNCC	1 cut(s)	93
BmiI	GGNNCC	2 cut(s)	193, 709
BmrFI	CCNGG	5 cut(s)	255, 276, 512, 597, 908
BmsI	GCATC	4 cut(s)	198, 208, 540, 668
BpmI	CTGGAG	3 cut(s)	144, 237, 726
Bpu10I	CCTNAGC	1 cut(s)	57
BpuMI	CCSGG	1 cut(s)	276
BsaJI	CCNNGG	3 cut(s)	372, 596, 906
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 257
BseBI	CCWGG	4 cut(s)	255, 512, 597, 908
BseDI	CCNNGG	3 cut(s)	372, 596, 906
BseGI	GGATG	4 cut(s)	199, 271, 659, 751
BseLI	CCNNNNNNNGG	2 cut(s)	218, 257
BseMII	CTCAG	1 cut(s)	71
BseRI	GAGGAG	1 cut(s)	509
BseSI	GKGCMC	2 cut(s)	23, 196
BseXI	GCAGC	4 cut(s)	115, 367, 480, 879
BseYI	CCCAGC	2 cut(s)	195, 401
BsgI	GTGCAG	1 cut(s)	693
BshFI	GGCC	1 cut(s)	879
BshNI	GGYRCC	1 cut(s)	191
BsiSI	CCGG	1 cut(s)	275
BslFI	GGGAC	2 cut(s)	19, 870
BslI	CCNNNNNNNGG	2 cut(s)	218, 257
BsmFI	GGGAC	2 cut(s)	19, 870
BsmI	GAATGC	2 cut(s)	661, 917
BsnI	GGCC	1 cut(s)	879
Bsp1286I	GDGCHC	3 cut(s)	23, 196, 712
Bsp1407I	TGTACA	1 cut(s)	850
BspACI	CCGC	5 cut(s)	137, 173, 666, 814, 824
BspANI	GGCC	1 cut(s)	879
BspCNI	CTCAG	1 cut(s)	70
BspLI	GGNNCC	2 cut(s)	193, 709
BspMAI	CTGCAG	1 cut(s)	385
BspQI	GCTCTTC	1 cut(s)	828
BspT107I	GGYRCC	1 cut(s)	191
BsrGI	TGTACA	1 cut(s)	850
BssECI	CCNNGG	3 cut(s)	372, 596, 906
BssT1I	CCWWGG	1 cut(s)	372
Bst2UI	CCWGG	4 cut(s)	255, 512, 597, 908
Bst4CI	ACNGT	1 cut(s)	394
Bst6I	CTCTTC	2 cut(s)	9, 828
BstAPI	GCANNNNNTGC	1 cut(s)	680
BstAUI	TGTACA	1 cut(s)	850
BstC8I	GCNNGC	5 cut(s)	108, 354, 555, 621, 822
BstDEI	CTNAG	2 cut(s)	30, 57
BstEII	GGTNACC	2 cut(s)	503, 728
BstF5I	GGATG	4 cut(s)	199, 271, 659, 751
BstHHI	GCGC	1 cut(s)	338
BstMWI	GCNNNNNNNGC	9 cut(s)	53, 128, 167, 563, 601, 665, 680, 716, 898
BstNI	CCWGG	4 cut(s)	255, 512, 597, 908
BstPI	GGTNACC	2 cut(s)	503, 728
BstSCI	CCNGG	5 cut(s)	253, 274, 510, 595, 906
BstSFI	CTRYAG	3 cut(s)	51, 381, 606
BstSLI	GKGCMC	2 cut(s)	23, 196
BstV1I	GCAGC	4 cut(s)	115, 367, 480, 879
BstXI	CCANNNNNNTGG	2 cut(s)	186, 518
BsuI	GTATCC	1 cut(s)	93
BsuRI	GGCC	1 cut(s)	879
BtsCI	GGATG	4 cut(s)	199, 271, 659, 751
Cac8I	GCNNGC	5 cut(s)	108, 354, 555, 621, 822
CaiI	CAGNNNCTG	2 cut(s)	680, 859
CfoI	GCGC	1 cut(s)	338
Cfr13I	GGNCC	1 cut(s)	93
Csp6I	GTAC	3 cut(s)	235, 302, 851
CviAII	CATG	1 cut(s)	875
CviQI	GTAC	3 cut(s)	235, 302, 851
DdeI	CTNAG	2 cut(s)	30, 57
DraIII	CACNNNGTG	1 cut(s)	455
Eam1104I	CTCTTC	2 cut(s)	9, 828
EarI	CTCTTC	2 cut(s)	9, 828
EciI	GGCGGA	1 cut(s)	839
Eco130I	CCWWGG	1 cut(s)	372
Eco24I	GRGCYC	1 cut(s)	712
Eco47I	GGWCC	1 cut(s)	93
Eco57I	CTGAAG	2 cut(s)	282, 342
Eco91I	GGTNACC	2 cut(s)	503, 728
EcoO65I	GGTNACC	2 cut(s)	503, 728
EcoRII	CCWGG	4 cut(s)	253, 510, 595, 906
EcoT14I	CCWWGG	1 cut(s)	372
EcoT22I	ATGCAT	1 cut(s)	661
EcoT38I	GRGCYC	1 cut(s)	712
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	1 cut(s)	878
FalI	AAGNNNNNCTT	2 cut(s)	524, 556
FaqI	GGGAC	2 cut(s)	19, 870
FatI	CATG	1 cut(s)	874
FauI	CCCGC	1 cut(s)	673
Fnu4HI	GCNGC	4 cut(s)	129, 381, 469, 893
FokI	GGATG	4 cut(s)	186, 258, 646, 758
FriOI	GRGCYC	1 cut(s)	712
Fsp4HI	GCNGC	4 cut(s)	129, 381, 469, 893
FspBI	CTAG	2 cut(s)	627, 798
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	4 cut(s)	129, 381, 469, 893
GsaI	CCCAGC	2 cut(s)	199, 405
GsuI	CTGGAG	3 cut(s)	144, 237, 726
HaeIII	GGCC	1 cut(s)	879
HapII	CCGG	1 cut(s)	275
HhaI	GCGC	1 cut(s)	338
Hin1II	CATG	1 cut(s)	878
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HindIII	AAGCTT	3 cut(s)	45, 538, 920
HinfI	GANTC	5 cut(s)	289, 320, 739, 791, 871
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	2 cut(s)	156, 740
Hpy166II	GTNNAC	1 cut(s)	851
Hpy188I	TCNGA	4 cut(s)	325, 484, 633, 931
Hpy188III	TCNNGA	8 cut(s)	59, 86, 286, 317, 432, 705, 743, 807
Hpy8I	GTNNAC	1 cut(s)	851
HpyAV	CCTTC	4 cut(s)	45, 87, 320, 325
HpyCH4III	ACNGT	1 cut(s)	394
HpyF10VI	GCNNNNNNNGC	9 cut(s)	53, 128, 167, 563, 601, 665, 680, 716, 898
HpyF3I	CTNAG	2 cut(s)	30, 57
Hsp92II	CATG	1 cut(s)	878
HspAI	GCGC	1 cut(s)	336
LguI	GCTCTTC	1 cut(s)	828
LmnI	GCTCC	6 cut(s)	125, 136, 377, 443, 563, 707
Lsp1109I	GCAGC	4 cut(s)	115, 367, 480, 879
LweI	GCATC	4 cut(s)	198, 208, 540, 668
MaeI	CTAG	2 cut(s)	627, 798
MaeIII	GTNAC	3 cut(s)	283, 503, 728
MboII	GAAGA	2 cut(s)	26, 845
MhlI	GDGCHC	3 cut(s)	23, 196, 712
MlyI	GAGTC	3 cut(s)	283, 329, 800
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	9 cut(s)	10, 37, 163, 222, 261, 466, 487, 686, 795
Mph1103I	ATGCAT	1 cut(s)	661
MseI	TTAA	3 cut(s)	396, 882, 955
MslI	CAYNNNNRTG	1 cut(s)	184
MspA1I	CMGCKG	2 cut(s)	668, 719
MspI	CCGG	1 cut(s)	275
MspR9I	CCNGG	5 cut(s)	255, 276, 512, 597, 908
Mva1269I	GAATGC	2 cut(s)	661, 917
MvaI	CCWGG	4 cut(s)	255, 512, 597, 908
MwoI	GCNNNNNNNGC	9 cut(s)	53, 128, 167, 563, 601, 665, 680, 716, 898
NciI	CCSGG	1 cut(s)	276
NlaIII	CATG	1 cut(s)	878
NlaIV	GGNNCC	2 cut(s)	193, 709
NmuCI	GTSAC	2 cut(s)	283, 728
NsiI	ATGCAT	1 cut(s)	661
PciSI	GCTCTTC	1 cut(s)	828
PctI	GAATGC	2 cut(s)	661, 917
PfeI	GAWTC	2 cut(s)	739, 871
PkrI	GCNGC	4 cut(s)	130, 382, 470, 894
PleI	GAGTC	3 cut(s)	283, 328, 799
PpsI	GAGTC	3 cut(s)	283, 328, 799
Psp6I	CCWGG	4 cut(s)	253, 510, 595, 906
PspEI	GGTNACC	2 cut(s)	503, 728
PspFI	CCCAGC	2 cut(s)	195, 401
PspGI	CCWGG	4 cut(s)	253, 510, 595, 906
PspN4I	GGNNCC	2 cut(s)	193, 709
PspPI	GGNCC	1 cut(s)	93
PstI	CTGCAG	1 cut(s)	385
PstNI	CAGNNNCTG	2 cut(s)	680, 859
PvuII	CAGCTG	1 cut(s)	719
RsaI	GTAC	3 cut(s)	236, 303, 852
RsaNI	GTAC	3 cut(s)	235, 302, 851
RseI	CAYNNNNRTG	1 cut(s)	184
SapI	GCTCTTC	1 cut(s)	828
SaqAI	TTAA	3 cut(s)	396, 882, 955
SatI	GCNGC	4 cut(s)	129, 381, 469, 893
Sau96I	GGNCC	1 cut(s)	93
SchI	GAGTC	3 cut(s)	283, 329, 800
ScrFI	CCNGG	5 cut(s)	255, 276, 512, 597, 908
SduI	GDGCHC	3 cut(s)	23, 196, 712
SfaNI	GCATC	4 cut(s)	198, 208, 540, 668
SfcI	CTRYAG	3 cut(s)	51, 381, 606
SinI	GGWCC	1 cut(s)	93
SmiMI	CAYNNNNRTG	1 cut(s)	184
SpeI	ACTAGT	1 cut(s)	626
SsiI	CCGC	5 cut(s)	137, 173, 666, 814, 824
SspMI	CTAG	2 cut(s)	627, 798
StyD4I	CCNGG	5 cut(s)	253, 274, 510, 595, 906
StyI	CCWWGG	1 cut(s)	372
TaaI	ACNGT	1 cut(s)	394
TatI	WGTACW	1 cut(s)	850
TfiI	GAWTC	2 cut(s)	739, 871
Tru1I	TTAA	3 cut(s)	396, 882, 955
Tru9I	TTAA	3 cut(s)	396, 882, 955
TseFI	GTSAC	2 cut(s)	283, 728
TseI	GCWGC	4 cut(s)	128, 380, 468, 892
Tsp45I	GTSAC	2 cut(s)	283, 728
TspDTI	ATGAA	2 cut(s)	468, 762
TspGWI	ACGGA	1 cut(s)	222
VpaK11BI	GGWCC	1 cut(s)	93
XcmI	CCANNNNNNNNNTGG	1 cut(s)	515
XspI	CTAG	2 cut(s)	627, 798
Zsp2I	ATGCAT	1 cut(s)	661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.