Rorug02G0105300
BZIP Family

G-box-binding factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003368
Physical Location & Seq
Reverse (-)
8959550 .. 8963057
3508 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0105300.1

Sequence Viewer

Length: 1425 bp
ATGTCATGCAACTGCGATATCGAAATTGCAGCTCTTCTTCCGCCTGAATCTGAATCTGAATCTGAATCTGACCCATCTCACTGTAATCCTCCGCTACCCACATCCCAACATCAAGAACAATCTTTATCTCCAAACCAAGTCCCGGAAGTTGCAGAGCCAGCGATCCTGGGATCATCGCCGCCGGAGGTAGACTTCCCAATCGAATGGCCCCCCGACGGGAAGCTCAGCCTGGACTGGGTCCAGAACCTCATGTCCGTCTTCGATTGGTCTTCAAGAAATCTAACACCAACCCAATTCCCGGAGGTTCTTCCCGTCCGGGTTTTCGATTCCTTGGTTCTTTGCGCCTCCAAGATTCTCCACAAAGAACCCAATTGCGTCAAGATCGACGACTGCGGCCCTGACTCCACCGTCGTCGTCGTCGGAGACGTCCACGGCCAGTTGCACGACGTTCTTTTTCTTCTCAAGGATGCTGGGTACCCTTCGGAGAATCGAGTCTTCGTCTTCAATGGGGATTATGTTGACAGAGGAGCTTGGGGTCTTGAGACTTTCTTGATTTTACTGGCTTGGAAAGTGTTGATGCCGAAAAGCGTGTATCTTTTGAGAGGTAACCATGAATCCAAGTACTGTACTTCTGTTTATGGGTTTGAGAAGGAAGTGCTAGTCAAGTATAGAGATGACGATGGTAAAGATAGAGTAGGTAAACATGTGTATAGAAAATGCCTGGGATGCTTTGAAGGGCTTCCTCTTGCGTCCATTATAAATGGCCATGTATATACTGCTCATGGGGGCCTGTTTAGGAGCATTGCAGTGACACCAGCTAAGAGGGGAAAGGGAAAGAAGAATCGAAAGATTGTTTTGAATTCGAATTCGGAGACTAGTACTTTGGTTCTGGGGTCTTTAGATGAGTTGTCTAAGGCTCGGAGATCCGTTCTTGATCCTCCCTGGGAAGGTTTGAACTTGATCCCGGGTGATGTGCTGTGGTCCGATCCCTCCATGAAACCTGGTCTTGCTCCCAATAAAGTCAGAGGCATTGGTCTGATTTGGGGTCCTGATTGCACTGAGGACTTTCTTAAGAAATTTCAGCTCAAGTTGATTATCAGATCGCATGAAGGACCTGATGCGCGTGAAAAGAGGCCAGGTCTTGGAGGCATGGATCAAGGGTACACCATAGATCACATCGTGGAGTCAGGGAAGCTCATTACTTTATTTAGTGCTCCAGATTACCCACAATTTCAGGGTACTGAGGAGAGGTATAGAAATAAAGGGGCTTACATCGTTCTGGAACCCCCTAATTTTGATCATCCTGTATTTCATAGTTTTGAAGCAATTACTCCAAGACCACAGGTAAAAGCATATTATGATTATGAAGAAGCAATTGATTCTGATGAAGAGTTGGACATGGCATCAATGGCAACTAGCCCGTGA

Protein Analysis

474

Amino Acids

52.75

Weight (kDa)

5.17

Isoelectric Point (pI)

44.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallophos PF00149 136 - 370 6.1e-30 Calcineurin-like phosphoesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 758
AasI GACNNNNNNGTC 1 cut(s) 407
AatII GACGTC 1 cut(s) 429
Acc65I GGTACC 1 cut(s) 474
AccB1I GGYRCC 1 cut(s) 474
AccB7I CCANNNNNTGG 1 cut(s) 1142
AccI GTMKAC 1 cut(s) 189
AccII CGCG 1 cut(s) 1123
AciI CCGC 4 cut(s) 41, 92, 179, 393
AclWI GGATC 7 cut(s) 157, 178, 918, 929, 955, 980, 1161
AcoI YGGCCR 2 cut(s) 433, 763
AcsI RAATTY 3 cut(s) 859, 865, 1076
AcyI GRCGYC 1 cut(s) 426
AdeI CACNNNGTG 1 cut(s) 1180
AfaI GTAC 6 cut(s) 476, 623, 628, 880, 1163, 1240
AfiI CCNNNNNNNGG 7 cut(s) 142, 215, 216, 235, 298, 947, 1142
AflII CTTAAG 1 cut(s) 1070
AflIII ACRYGT 1 cut(s) 703
AgsI TTSAA 6 cut(s) 273, 505, 734, 859, 955, 1322
AhlI ACTAGT 1 cut(s) 875
AjnI CCWGG 6 cut(s) 165, 228, 720, 941, 1000, 1135
AloI GAACNNNNNNTCC 2 cut(s) 236, 268
AluBI AGCT 6 cut(s) 32, 223, 530, 818, 1084, 1195
AluI AGCT 6 cut(s) 32, 223, 530, 818, 1084, 1195
Alw21I GWGCWC 1 cut(s) 1216
Alw26I GTCTC 3 cut(s) 417, 536, 866
AlwI GGATC 7 cut(s) 157, 178, 918, 929, 955, 980, 1161
Ama87I CYCGRG 1 cut(s) 964
AoxI GGCC 6 cut(s) 206, 394, 433, 763, 787, 1133
ApeKI GCWGC 1 cut(s) 29
ApoI RAATTY 3 cut(s) 859, 865, 1076
ArsI GACNNNNNNTTYG 2 cut(s) 865, 897
Asp700I GAANNNNTTC 1 cut(s) 738
Asp718I GGTACC 1 cut(s) 474
AspLEI GCGC 2 cut(s) 344, 1123
AspS9I GGNCC 7 cut(s) 207, 238, 395, 787, 981, 1046, 1112
AsuC2I CCSGG 5 cut(s) 143, 299, 317, 965, 966
AsuHPI GGTGA 1 cut(s) 980
AsuII TTCGAA 1 cut(s) 863
AvaI CYCGRG 1 cut(s) 964
AvaII GGWCC 4 cut(s) 238, 981, 1046, 1112
BalI TGGCCA 1 cut(s) 765
BanI GGYRCC 1 cut(s) 474
BbsI GAAGAC 4 cut(s) 250, 261, 487, 493
Bbv12I GWGCWC 1 cut(s) 1216
BbvI GCAGC 1 cut(s) 41
BccI CCATC 2 cut(s) 82, 674
BceAI ACGGC 1 cut(s) 448
BciT130I CCWGG 6 cut(s) 167, 230, 722, 943, 1002, 1137
BclI TGATCA 1 cut(s) 1297
BcnI CCSGG 5 cut(s) 143, 299, 317, 965, 966
BcoDI GTCTC 3 cut(s) 417, 536, 866
BcuI ACTAGT 1 cut(s) 875
BfaI CTAG 3 cut(s) 659, 876, 1416
BfrI CTTAAG 1 cut(s) 1070
BisI GCNGC 3 cut(s) 30, 179, 394
BlpI GCTNAGC 1 cut(s) 224
BlsI GCNGC 3 cut(s) 31, 180, 395
BmcAI AGTACT 2 cut(s) 623, 880
Bme18I GGWCC 4 cut(s) 238, 981, 1046, 1112
BmeT110I CYCGRG 1 cut(s) 964
BmgT120I GGNCC 7 cut(s) 207, 238, 395, 787, 981, 1046, 1112
BmiI GGNNCC 6 cut(s) 209, 239, 476, 788, 1047, 1284
BmrI ACTGGG 1 cut(s) 244
BmsI GCATC 5 cut(s) 457, 567, 716, 1108, 1412
BmuI ACTGGG 1 cut(s) 244
BpiI GAAGAC 4 cut(s) 250, 261, 487, 493
BpmI CTGGAG 1 cut(s) 1200
Bpu1102I GCTNAGC 1 cut(s) 224
Bpu14I TTCGAA 1 cut(s) 863
BpuEI CTTGAG 3 cut(s) 446, 560, 1070
BpuMI CCSGG 5 cut(s) 143, 299, 317, 965, 966
BsaHI GRCGYC 1 cut(s) 426
BsaJI CCNNGG 7 cut(s) 166, 330, 430, 721, 941, 942, 964
Bsc4I CCNNNNNNNGG 7 cut(s) 142, 215, 216, 235, 298, 947, 1142
Bse1I ACTGG 3 cut(s) 239, 436, 564
Bse3DI GCAATG 1 cut(s) 801
BseBI CCWGG 6 cut(s) 167, 230, 722, 943, 1002, 1137
BseDI CCNNGG 7 cut(s) 166, 330, 430, 721, 941, 942, 964
BseGI GGATG 4 cut(s) 101, 472, 731, 1300
BseLI CCNNNNNNNGG 7 cut(s) 142, 215, 216, 235, 298, 947, 1142
BseMI GCAATG 1 cut(s) 801
BseMII CTCAG 3 cut(s) 238, 1050, 1233
BseNI ACTGG 3 cut(s) 239, 436, 564
BseRI GAGGAG 2 cut(s) 540, 1259
BseXI GCAGC 1 cut(s) 41
BseYI CCCAGC 1 cut(s) 470
Bsh1236I CGCG 1 cut(s) 1123
BshFI GGCC 6 cut(s) 208, 396, 435, 765, 789, 1135
BshNI GGYRCC 1 cut(s) 474
BsiHKAI GWGCWC 1 cut(s) 1216
BsiHKCI CYCGRG 1 cut(s) 964
BsiSI CCGG 5 cut(s) 143, 182, 299, 316, 965
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 7 cut(s) 142, 215, 216, 235, 298, 947, 1142
BsmAI GTCTC 3 cut(s) 417, 536, 866
BsmBI CGTCTC 1 cut(s) 417
BsmFI GGGAC 1 cut(s) 125
BsnI GGCC 6 cut(s) 208, 396, 435, 765, 789, 1135
BsoBI CYCGRG 1 cut(s) 964
Bsp119I TTCGAA 1 cut(s) 863
Bsp1286I GDGCHC 1 cut(s) 1216
Bsp1720I GCTNAGC 1 cut(s) 224
BspACI CCGC 4 cut(s) 41, 92, 179, 393
BspANI GGCC 6 cut(s) 208, 396, 435, 765, 789, 1135
BspCNI CTCAG 3 cut(s) 237, 1051, 1234
BspFNI CGCG 1 cut(s) 1123
BspLI GGNNCC 6 cut(s) 209, 239, 476, 788, 1047, 1284
BspPI GGATC 7 cut(s) 157, 178, 918, 929, 955, 980, 1161
BspQI GCTCTTC 1 cut(s) 39
BspT104I TTCGAA 1 cut(s) 863
BspT107I GGYRCC 1 cut(s) 474
BspTI CTTAAG 1 cut(s) 1070
BsrDI GCAATG 1 cut(s) 801
BsrI ACTGG 3 cut(s) 239, 436, 564
BssECI CCNNGG 7 cut(s) 166, 330, 430, 721, 941, 942, 964
BssNI GRCGYC 1 cut(s) 426
BssT1I CCWWGG 1 cut(s) 330
Bst2UI CCWGG 6 cut(s) 167, 230, 722, 943, 1002, 1137
Bst4CI ACNGT 3 cut(s) 83, 409, 626
Bst6I CTCTTC 2 cut(s) 39, 1383
BstACI GRCGYC 1 cut(s) 426
BstAFI CTTAAG 1 cut(s) 1070
BstBI TTCGAA 1 cut(s) 863
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 5 cut(s) 224, 819, 912, 1059, 1242
BstDSI CCRYGG 1 cut(s) 430
BstEII GGTNACC 1 cut(s) 605
BstF5I GGATG 4 cut(s) 101, 472, 731, 1300
BstFNI CGCG 1 cut(s) 1123
BstHHI GCGC 2 cut(s) 344, 1123
BstMAI GTCTC 3 cut(s) 417, 536, 866
BstMWI GCNNNNNNNGC 3 cut(s) 158, 726, 1409
BstNI CCWGG 6 cut(s) 167, 230, 722, 943, 1002, 1137
BstNSI RCATGY 1 cut(s) 707
BstPI GGTNACC 1 cut(s) 605
BstUI CGCG 1 cut(s) 1123
BstV1I GCAGC 1 cut(s) 41
BstV2I GAAGAC 4 cut(s) 250, 261, 487, 493
BstX2I RGATCY 1 cut(s) 923
BstXI CCANNNNNNTGG 1 cut(s) 204
BstYI RGATCY 1 cut(s) 923
BsuRI GGCC 6 cut(s) 208, 396, 435, 765, 789, 1135
BtgI CCRYGG 1 cut(s) 430
BtgZI GCGATG 1 cut(s) 159
BtsCI GGATG 4 cut(s) 101, 472, 731, 1300
BtsI GCAGTG 1 cut(s) 813
BtsIMutI CAGTG 3 cut(s) 79, 813, 1056
Cac8I GCNNGC 1 cut(s) 159
CfoI GCGC 2 cut(s) 344, 1123
Cfr13I GGNCC 7 cut(s) 207, 238, 395, 787, 981, 1046, 1112
Cfr9I CCCGGG 1 cut(s) 964
CseI GACGC 2 cut(s) 364, 738
CsiI ACCWGGT 1 cut(s) 1000
Csp6I GTAC 6 cut(s) 475, 622, 627, 879, 1162, 1239
CviQI GTAC 6 cut(s) 475, 622, 627, 879, 1162, 1239
DdeI CTNAG 5 cut(s) 224, 819, 912, 1059, 1242
DraIII CACNNNGTG 1 cut(s) 1180
DrdI GACNNNNNNGTC 1 cut(s) 407
DseDI GACNNNNNNGTC 1 cut(s) 407
EaeI YGGCCR 2 cut(s) 433, 763
Eam1104I CTCTTC 2 cut(s) 39, 1383
EarI CTCTTC 2 cut(s) 39, 1383
EciI GGCGGA 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 330
Eco32I GATATC 1 cut(s) 19
Eco47I GGWCC 4 cut(s) 238, 981, 1046, 1112
Eco88I CYCGRG 1 cut(s) 964
Eco91I GGTNACC 1 cut(s) 605
EcoO109I RGGNCCY 3 cut(s) 787, 1046, 1112
EcoO65I GGTNACC 1 cut(s) 605
EcoRI GAATTC 2 cut(s) 859, 865
EcoRII CCWGG 6 cut(s) 165, 228, 720, 941, 1000, 1135
EcoRV GATATC 1 cut(s) 19
EcoT14I CCWWGG 1 cut(s) 330
ErhI CCWWGG 1 cut(s) 330
Esp3I CGTCTC 1 cut(s) 417
FaqI GGGAC 1 cut(s) 125
FbaI TGATCA 1 cut(s) 1297
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 3 cut(s) 30, 179, 394
FokI GGATG 4 cut(s) 88, 479, 738, 1287
Fsp4HI GCNGC 3 cut(s) 30, 179, 394
FspBI CTAG 3 cut(s) 659, 876, 1416
GlaI GCGC 2 cut(s) 343, 1122
GluI GCNGC 3 cut(s) 30, 179, 394
GsaI CCCAGC 1 cut(s) 474
GsuI CTGGAG 1 cut(s) 1200
HaeIII GGCC 6 cut(s) 208, 396, 435, 765, 789, 1135
HapII CCGG 5 cut(s) 143, 182, 299, 316, 965
HgaI GACGC 2 cut(s) 364, 738
HhaI GCGC 2 cut(s) 344, 1123
Hin1I GRCGYC 1 cut(s) 426
Hin6I GCGC 2 cut(s) 342, 1121
HinP1I GCGC 2 cut(s) 342, 1121
HincII GTYRAC 1 cut(s) 520
HindII GTYRAC 1 cut(s) 520
HpaII CCGG 5 cut(s) 143, 182, 299, 316, 965
HphI GGTGA 1 cut(s) 980
Hpy166II GTNNAC 5 cut(s) 190, 430, 520, 701, 1164
Hpy8I GTNNAC 5 cut(s) 190, 430, 520, 701, 1164
Hpy99I CGWCG 7 cut(s) 218, 389, 413, 416, 419, 422, 449
HpyAV CCTTC 5 cut(s) 489, 643, 728, 941, 1103
HpyCH4III ACNGT 3 cut(s) 83, 409, 626
HpyCH4IV ACGT 2 cut(s) 426, 447
HpyCH4V TGCA 6 cut(s) 9, 29, 152, 442, 806, 1056
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 726, 1409
HpyF3I CTNAG 5 cut(s) 224, 819, 912, 1059, 1242
HpySE526I ACGT 2 cut(s) 426, 447
Hsp92I GRCGYC 1 cut(s) 426
HspAI GCGC 2 cut(s) 342, 1121
KpnI GGTACC 1 cut(s) 478
Ksp22I TGATCA 1 cut(s) 1297
LguI GCTCTTC 1 cut(s) 39
LmnI GCTCC 4 cut(s) 527, 798, 1015, 1219
Lsp1109I GCAGC 1 cut(s) 41
LweI GCATC 5 cut(s) 457, 567, 716, 1108, 1412
MabI ACCWGGT 1 cut(s) 1000
MaeI CTAG 3 cut(s) 659, 876, 1416
MaeII ACGT 2 cut(s) 426, 447
MaeIII GTNAC 2 cut(s) 605, 808
MfeI CAATTG 2 cut(s) 370, 1374
MflI RGATCY 1 cut(s) 923
MhlI GDGCHC 1 cut(s) 1216
MlsI TGGCCA 1 cut(s) 765
MluNI TGGCCA 1 cut(s) 765
MlyI GAGTC 3 cut(s) 395, 501, 1193
MmeI TCCRAC 2 cut(s) 400, 1374
Mox20I TGGCCA 1 cut(s) 765
MroXI GAANNNNTTC 1 cut(s) 738
MscI TGGCCA 1 cut(s) 765
MseI TTAA 1 cut(s) 1071
MslI CAYNNNNRTG 1 cut(s) 806
Msp20I TGGCCA 1 cut(s) 765
MspCI CTTAAG 1 cut(s) 1070
MspI CCGG 5 cut(s) 143, 182, 299, 316, 965
MunI CAATTG 2 cut(s) 370, 1374
MvaI CCWGG 6 cut(s) 167, 230, 722, 943, 1002, 1137
MvnI CGCG 1 cut(s) 1123
MwoI GCNNNNNNNGC 3 cut(s) 158, 726, 1409
NciI CCSGG 5 cut(s) 143, 299, 317, 965, 966
NlaIV GGNNCC 6 cut(s) 209, 239, 476, 788, 1047, 1284
NmuCI GTSAC 1 cut(s) 808
NspI RCATGY 1 cut(s) 707
NspV TTCGAA 1 cut(s) 863
PasI CCCWGGG 1 cut(s) 942
PciI ACATGT 1 cut(s) 703
PciSI GCTCTTC 1 cut(s) 39
PcsI WCGNNNNNNNCGW 1 cut(s) 423
PdmI GAANNNNTTC 1 cut(s) 738
PflFI GACNNNGTC 1 cut(s) 236
PflMI CCANNNNNTGG 1 cut(s) 1142
PfoI TCCNGGA 2 cut(s) 141, 297
PkrI GCNGC 3 cut(s) 31, 180, 395
PleI GAGTC 3 cut(s) 395, 500, 1192
PpsI GAGTC 3 cut(s) 395, 500, 1192
PpuMI RGGWCCY 2 cut(s) 1046, 1112
PscI ACATGT 1 cut(s) 703
PsiI TTATAA 1 cut(s) 758
Psp5II RGGWCCY 2 cut(s) 1046, 1112
Psp6I CCWGG 6 cut(s) 165, 228, 720, 941, 1000, 1135
PspEI GGTNACC 1 cut(s) 605
PspFI CCCAGC 1 cut(s) 470
PspGI CCWGG 6 cut(s) 165, 228, 720, 941, 1000, 1135
PspN4I GGNNCC 6 cut(s) 209, 239, 476, 788, 1047, 1284
PspPI GGNCC 7 cut(s) 207, 238, 395, 787, 981, 1046, 1112
PspPPI RGGWCCY 2 cut(s) 1046, 1112
PsuI RGATCY 1 cut(s) 923
PsyI GACNNNGTC 1 cut(s) 236
RsaI GTAC 6 cut(s) 476, 623, 628, 880, 1163, 1240
RsaNI GTAC 6 cut(s) 475, 622, 627, 879, 1162, 1239
RseI CAYNNNNRTG 1 cut(s) 806
SapI GCTCTTC 1 cut(s) 39
SaqAI TTAA 1 cut(s) 1071
SatI GCNGC 3 cut(s) 30, 179, 394
Sau96I GGNCC 7 cut(s) 207, 238, 395, 787, 981, 1046, 1112
ScaI AGTACT 2 cut(s) 623, 880
SchI GAGTC 3 cut(s) 395, 501, 1193
SduI GDGCHC 1 cut(s) 1216
SexAI ACCWGGT 1 cut(s) 1000
SfaNI GCATC 5 cut(s) 457, 567, 716, 1108, 1412
SfuI TTCGAA 1 cut(s) 863
SinI GGWCC 4 cut(s) 238, 981, 1046, 1112
SmaI CCCGGG 1 cut(s) 966
SmiMI CAYNNNNRTG 1 cut(s) 806
SmlI CTYRAG 4 cut(s) 461, 539, 1070, 1085
SmoI CTYRAG 4 cut(s) 461, 539, 1070, 1085
SpeI ACTAGT 1 cut(s) 875
SsiI CCGC 4 cut(s) 41, 92, 179, 393
SspMI CTAG 3 cut(s) 659, 876, 1416
StyI CCWWGG 1 cut(s) 330
TaaI ACNGT 3 cut(s) 83, 409, 626
TaiI ACGT 2 cut(s) 429, 450
TaqI TCGA 8 cut(s) 21, 201, 261, 324, 384, 490, 844, 863
TatI WGTACW 3 cut(s) 621, 626, 878
TauI GCSGC 2 cut(s) 181, 396
Tru1I TTAA 1 cut(s) 1071
Tru9I TTAA 1 cut(s) 1071
TscAI CASTG 3 cut(s) 86, 813, 1063
TseFI GTSAC 1 cut(s) 808
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 1 cut(s) 808
TspDTI ATGAA 6 cut(s) 627, 1010, 1122, 1301, 1380, 1401
TspGWI ACGGA 2 cut(s) 244, 916
TspMI CCCGGG 1 cut(s) 964
TspRI CASTG 3 cut(s) 86, 813, 1063
Tth111I GACNNNGTC 1 cut(s) 236
Van91I CCANNNNNTGG 1 cut(s) 1142
Vha464I CTTAAG 1 cut(s) 1070
VpaK11BI GGWCC 4 cut(s) 238, 981, 1046, 1112
XapI RAATTY 3 cut(s) 859, 865, 1076
XceI RCATGY 1 cut(s) 707
XmaI CCCGGG 1 cut(s) 964
XmiI GTMKAC 1 cut(s) 189
XmnI GAANNNNTTC 1 cut(s) 738
XspI CTAG 3 cut(s) 659, 876, 1416
ZraI GACGTC 1 cut(s) 427
ZrmI AGTACT 2 cut(s) 623, 880
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.