Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8264951.1

Orthogroup ID

OG0003368

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 397

Gene Structure 397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8264951.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

caggcggagtgtgaagagctacaaaaaagtgtacagggactgaccaatgagaatcatggccttaaagatgagctgcaaaggctctcccaggaatgcgagaagcttgtgtctgaaaatacttctataaaggaagagttgacacgattgtgtggaccaaatttagtagcaaacattgaacatcaatctcgtggcggtgagggcaacagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

69

Amino Acids

7.65

Weight (kDa)

4.77

Isoelectric Point (pI)

60.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36730 AT4G36730
fragaria_vesca	FvH4_1g13880 FvH4_1g13880 FvH4_1g13880 FvH4_1g13880 FvH4_1g13880
malus_domestica	MD15G1266700.v1.1
prunus_persica	Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1
pyrus_communis	pycom02g11970 pycom15g23210
rosa_chinensis	RchiOBHm_Chr2g0102191
rosa_laevigata	RLG00000017087 RLG00000017137
rosa_multiflora	Rmu_co8040408.1_g000001 Rmu_co8264951.1_g000001 Rmu_sc0010937.1_g000010 Rmu_sc0011183.1_g000011 Rmu_sc0020365.1_g000005
rosa_roxburghii	Rroxscaffold_2G00140700 Rroxscaffold_2G00140710 Rroxscaffold_2G00141220
rosa_rugosa	Rorug02G0105200 Rorug02G0105300 Rorug02G0105300 Rorug02G0105300
rosa_samantha	Rh2AG153400 Rh2BG159300 Rh2CG158800 Rh2DG159000
rosa_wichuraiana	Rw2G011980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 192
AcsI	RAATTY	1 cut(s)	157
AfaI	GTAC	1 cut(s)	33
AgsI	TTSAA	1 cut(s)	176
AjnI	CCWGG	1 cut(s)	87
AleI	CACNNNNGTG	1 cut(s)	145
AluBI	AGCT	3 cut(s)	19, 73, 103
AluI	AGCT	3 cut(s)	19, 73, 103
AlwNI	CAGNNNCTG	1 cut(s)	40
AoxI	GGCC	1 cut(s)	58
ApeKI	GCWGC	1 cut(s)	73
ApoI	RAATTY	1 cut(s)	157
AspS9I	GGNCC	1 cut(s)	152
AsuHPI	GGTGA	1 cut(s)	206
AvaII	GGWCC	1 cut(s)	152
BauI	CACGAG	1 cut(s)	186
BbvI	GCAGC	1 cut(s)	60
BciT130I	CCWGG	1 cut(s)	89
BisI	GCNGC	1 cut(s)	74
BlsI	GCNGC	1 cut(s)	75
Bme1390I	CCNGG	1 cut(s)	89
Bme18I	GGWCC	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	152
BmrFI	CCNGG	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	87
BseBI	CCWGG	1 cut(s)	89
BseDI	CCNNGG	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	60
BshFI	GGCC	1 cut(s)	60
BslFI	GGGAC	1 cut(s)	51
BsmFI	GGGAC	1 cut(s)	51
BsmI	GAATGC	1 cut(s)	98
BsnI	GGCC	1 cut(s)	60
Bsp1407I	TGTACA	1 cut(s)	31
BspACI	CCGC	2 cut(s)	5, 192
BspANI	GGCC	1 cut(s)	60
BspQI	GCTCTTC	1 cut(s)	9
BsrGI	TGTACA	1 cut(s)	31
BssECI	CCNNGG	1 cut(s)	87
BssSI	CACGAG	1 cut(s)	186
Bst2BI	CACGAG	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	1 cut(s)	206
Bst6I	CTCTTC	2 cut(s)	9, 126
BstAUI	TGTACA	1 cut(s)	31
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 198
BstNI	CCWGG	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	87
BstV1I	GCAGC	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	60
CaiI	CAGNNNCTG	1 cut(s)	40
Cfr13I	GGNCC	1 cut(s)	152
Csp6I	GTAC	1 cut(s)	32
CviAII	CATG	1 cut(s)	56
CviJI	RGCY	5 cut(s)	19, 60, 73, 82, 103
CviKI_1	RGCY	5 cut(s)	19, 60, 73, 82, 103
CviQI	GTAC	1 cut(s)	32
Eam1104I	CTCTTC	2 cut(s)	9, 126
EarI	CTCTTC	2 cut(s)	9, 126
EciI	GGCGGA	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	87
FaeI	CATG	1 cut(s)	59
FaiI	YATR	2 cut(s)	57, 125
FaqI	GGGAC	1 cut(s)	51
FatI	CATG	1 cut(s)	55
Fnu4HI	GCNGC	1 cut(s)	74
Fsp4HI	GCNGC	1 cut(s)	74
GluI	GCNGC	1 cut(s)	74
HaeIII	GGCC	1 cut(s)	60
Hin1II	CATG	1 cut(s)	59
HincII	GTYRAC	1 cut(s)	138
HindII	GTYRAC	1 cut(s)	138
HindIII	AAGCTT	1 cut(s)	101
HinfI	GANTC	1 cut(s)	52
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	3 cut(s)	32, 138, 152
Hpy188I	TCNGA	1 cut(s)	112
Hpy8I	GTNNAC	3 cut(s)	32, 138, 152
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4V	TGCA	1 cut(s)	76
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 198
Hsp92II	CATG	1 cut(s)	59
LguI	GCTCTTC	1 cut(s)	9
LpnPI	CCDG	3 cut(s)	20, 74, 101
Lsp1109I	GCAGC	1 cut(s)	60
MboII	GAAGA	2 cut(s)	26, 143
MluCI	AATT	1 cut(s)	157
MnlI	CCTC	1 cut(s)	190
MseI	TTAA	1 cut(s)	63
MslI	CAYNNNNRTG	1 cut(s)	145
MspR9I	CCNGG	1 cut(s)	89
Mva1269I	GAATGC	1 cut(s)	98
MvaI	CCWGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	2 cut(s)	79, 198
NlaIII	CATG	1 cut(s)	59
OliI	CACNNNNGTG	1 cut(s)	145
PciSI	GCTCTTC	1 cut(s)	9
PctI	GAATGC	1 cut(s)	98
PfeI	GAWTC	1 cut(s)	52
PkrI	GCNGC	1 cut(s)	75
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
PspPI	GGNCC	1 cut(s)	152
PstNI	CAGNNNCTG	1 cut(s)	40
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
RseI	CAYNNNNRTG	1 cut(s)	145
SapI	GCTCTTC	1 cut(s)	9
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	1 cut(s)	74
Sau96I	GGNCC	1 cut(s)	152
ScrFI	CCNGG	1 cut(s)	89
SetI	ASST	3 cut(s)	21, 75, 105
SinI	GGWCC	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	145
Sse9I	AATT	1 cut(s)	157
SsiI	CCGC	2 cut(s)	5, 192
StyD4I	CCNGG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	206
TasI	AATT	1 cut(s)	157
TatI	WGTACW	1 cut(s)	31
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TseI	GCWGC	1 cut(s)	73
VpaK11BI	GGWCC	1 cut(s)	152
XapI	RAATTY	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.