Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003368

Physical Location & Seq

Genomic Coordinates Forward (+)

78997229 .. 78997636

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00140710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGTTTTTCCAGGCGGAGTGTGAAGAGCTACAAAAAAGTGTACAGGGACTGACCAATGAGAATCATGGCCTTAAAGATGAGCTGCAAAGGCTCTCCCAGGAATGCGAGAAGCTTGCGTCTGAAAATACTTCTATAAAGGAAGAGTTGACACGATTGTGTGGACCAGATTTAGTAGCAAACATTGAACATCAATCTCGTGGCGGTGAGGGCAACAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

72

Amino Acids

8.05

Weight (kDa)

4.65

Isoelectric Point (pI)

57.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	4 - 42	3.3e-08	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36730 AT4G36730
fragaria_vesca	FvH4_1g13880 FvH4_1g13880 FvH4_1g13880 FvH4_1g13880 FvH4_1g13880
malus_domestica	MD15G1266700.v1.1
prunus_persica	Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1
pyrus_communis	pycom02g11970 pycom15g23210
rosa_chinensis	RchiOBHm_Chr2g0102191
rosa_laevigata	RLG00000017087 RLG00000017137
rosa_multiflora	Rmu_co8040408.1_g000001 Rmu_co8264951.1_g000001 Rmu_sc0010937.1_g000010 Rmu_sc0011183.1_g000011 Rmu_sc0020365.1_g000005
rosa_roxburghii	Rroxscaffold_2G00140700 Rroxscaffold_2G00140710 Rroxscaffold_2G00141220
rosa_rugosa	Rorug02G0105200 Rorug02G0105300 Rorug02G0105300 Rorug02G0105300
rosa_samantha	Rh2AG153400 Rh2BG159300 Rh2CG158800 Rh2DG159000
rosa_wichuraiana	Rw2G011980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	14, 201
AfaI	GTAC	1 cut(s)	42
AgsI	TTSAA	1 cut(s)	185
AjnI	CCWGG	2 cut(s)	9, 96
AleI	CACNNNNGTG	1 cut(s)	154
AluBI	AGCT	3 cut(s)	28, 82, 112
AluI	AGCT	3 cut(s)	28, 82, 112
AlwNI	CAGNNNCTG	1 cut(s)	49
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	1 cut(s)	82
AspS9I	GGNCC	1 cut(s)	161
AsuHPI	GGTGA	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	161
BauI	CACGAG	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	69
BcgI	CGANNNNNNTGC	2 cut(s)	95, 129
BciT130I	CCWGG	2 cut(s)	11, 98
BisI	GCNGC	1 cut(s)	83
BlsI	GCNGC	1 cut(s)	84
Bme1390I	CCNGG	2 cut(s)	11, 98
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	161
BmrFI	CCNGG	2 cut(s)	11, 98
BsaJI	CCNNGG	1 cut(s)	96
BseBI	CCWGG	2 cut(s)	11, 98
BseDI	CCNNGG	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	69
BshFI	GGCC	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	60
BsmFI	GGGAC	1 cut(s)	60
BsmI	GAATGC	1 cut(s)	107
BsnI	GGCC	1 cut(s)	69
Bsp1407I	TGTACA	1 cut(s)	40
BspACI	CCGC	2 cut(s)	14, 201
BspANI	GGCC	1 cut(s)	69
BspQI	GCTCTTC	1 cut(s)	18
BsrGI	TGTACA	1 cut(s)	40
BssECI	CCNNGG	1 cut(s)	96
BssSI	CACGAG	1 cut(s)	195
Bst2BI	CACGAG	1 cut(s)	195
Bst2UI	CCWGG	2 cut(s)	11, 98
Bst4CI	ACNGT	1 cut(s)	215
Bst6I	CTCTTC	2 cut(s)	18, 135
BstAUI	TGTACA	1 cut(s)	40
BstC8I	GCNNGC	1 cut(s)	114
BstMWI	GCNNNNNNNGC	2 cut(s)	88, 207
BstNI	CCWGG	2 cut(s)	11, 98
BstSCI	CCNGG	2 cut(s)	9, 96
BstV1I	GCAGC	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	69
Cac8I	GCNNGC	1 cut(s)	114
CaiI	CAGNNNCTG	1 cut(s)	49
Cfr13I	GGNCC	1 cut(s)	161
CseI	GACGC	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	41
CviAII	CATG	1 cut(s)	65
CviJI	RGCY	5 cut(s)	28, 69, 82, 91, 112
CviKI_1	RGCY	5 cut(s)	28, 69, 82, 91, 112
CviQI	GTAC	1 cut(s)	41
Eam1104I	CTCTTC	2 cut(s)	18, 135
EarI	CTCTTC	2 cut(s)	18, 135
EciI	GGCGGA	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	161
EcoRII	CCWGG	2 cut(s)	9, 96
FaeI	CATG	1 cut(s)	68
FaiI	YATR	2 cut(s)	66, 134
FaqI	GGGAC	1 cut(s)	60
FatI	CATG	1 cut(s)	64
Fnu4HI	GCNGC	1 cut(s)	83
Fsp4HI	GCNGC	1 cut(s)	83
GluI	GCNGC	1 cut(s)	83
HaeIII	GGCC	1 cut(s)	69
HgaI	GACGC	1 cut(s)	105
Hin1II	CATG	1 cut(s)	68
HincII	GTYRAC	1 cut(s)	147
HindII	GTYRAC	1 cut(s)	147
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	1 cut(s)	61
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	3 cut(s)	41, 147, 161
Hpy188I	TCNGA	1 cut(s)	121
Hpy8I	GTNNAC	3 cut(s)	41, 147, 161
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4V	TGCA	1 cut(s)	85
HpyF10VI	GCNNNNNNNGC	2 cut(s)	88, 207
Hsp92II	CATG	1 cut(s)	68
LguI	GCTCTTC	1 cut(s)	18
LpnPI	CCDG	5 cut(s)	23, 29, 83, 110, 177
Lsp1109I	GCAGC	1 cut(s)	69
MboII	GAAGA	2 cut(s)	35, 152
MnlI	CCTC	1 cut(s)	199
MseI	TTAA	1 cut(s)	72
MslI	CAYNNNNRTG	1 cut(s)	154
MspR9I	CCNGG	2 cut(s)	11, 98
Mva1269I	GAATGC	1 cut(s)	107
MvaI	CCWGG	2 cut(s)	11, 98
MwoI	GCNNNNNNNGC	2 cut(s)	88, 207
NlaIII	CATG	1 cut(s)	68
OliI	CACNNNNGTG	1 cut(s)	154
PciSI	GCTCTTC	1 cut(s)	18
PctI	GAATGC	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	61
PkrI	GCNGC	1 cut(s)	84
Psp6I	CCWGG	2 cut(s)	9, 96
PspGI	CCWGG	2 cut(s)	9, 96
PspPI	GGNCC	1 cut(s)	161
PstNI	CAGNNNCTG	1 cut(s)	49
RsaI	GTAC	1 cut(s)	42
RsaNI	GTAC	1 cut(s)	41
RseI	CAYNNNNRTG	1 cut(s)	154
SapI	GCTCTTC	1 cut(s)	18
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	1 cut(s)	83
Sau96I	GGNCC	1 cut(s)	161
ScrFI	CCNGG	2 cut(s)	11, 98
SetI	ASST	3 cut(s)	30, 84, 114
SinI	GGWCC	1 cut(s)	161
SmiMI	CAYNNNNRTG	1 cut(s)	154
SsiI	CCGC	2 cut(s)	14, 201
StyD4I	CCNGG	2 cut(s)	9, 96
TaaI	ACNGT	1 cut(s)	215
TatI	WGTACW	1 cut(s)	40
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TseI	GCWGC	1 cut(s)	82
VpaK11BI	GGWCC	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.