Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003368

Physical Location & Seq

Genomic Coordinates Reverse (-)

8548148 .. 8551156

Gene Structure 3009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g11970.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGGGACAGGGGAAGAAGGTACTCCTCCTAAGCCTTCCAAACAAGCTTCAACAGCTCAGGAAATACCAACACCACCTTCATATCCCGATTGGTCCAGCCCTATGCAGCATCCTATGATGCCGCCATATGGAACTCCAGTTCCATATCCGGCCATGTATCCTCCAGGTGGAGTTTATGCTCATCCTAGTATGGTCACGACTCCAGGCGCACCACAACCAGCCCCGGAGTTGGAAGGGAAGGGTTCTGATGGGAAAGAGCGGGTTTCAACTAAAAAGACCAAGGGAGCTGCAGGAAATGCAAGTTTGGCTGGTGGCAAGGCTGTGGAGAGTGGAAAGGCAACTTCAGGTTCAGGAAATGATGGTGCTTCACAAAGTGGTGAAAGTGGTAGCGAGGGTTCCTCCGATGGAAGTGATGATAATGCTAACCATCAGGAGTATGGTGCAAACAAGAAGGGGAGCTTTGACAAGATGCTTGCAGATGGTGCAAATGCACAGAATAGCACTGGGGCCATTCAGGCTTCAGTGCCTGGGAAGCCTGTCTCTATGCCTGGAACTAATCTGAATATTGGAATGGACTTATGGAATTCATCCCCTGCTGGTGCTGGAGCAGCAAAAGTGAGAGGAAATCTGTCGGGTGCCCCATCAGCTGGTGGTGAGCATTGGATTCAAGACGAACGTGAACTGAAAAGACAGAAAAGAAAGCAATCGAATAGGGAGTCAGCTAGGAGGTCAAGATTACGGAAGCAGGCAGAGTGTGAAGAGCTACAAGCAAGGGTAGAGGTTTTGAGCAATGAGAATCATAGCCTCAGAGAGGAGCTGCACAGGCTTTCTGAGGAATGCGAGAAACTTACATCAGAGAATACTAATATAAAGGAAGAATTGACACGAGTATGTGGACCTGATTTAGTAGCAAACCTTGAGCAGCAGCCTGGTGGTGGTGAGGGCAACAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

318

Amino Acids

33.13

Weight (kDa)

5.66

Isoelectric Point (pI)

55.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36730 AT4G36730
fragaria_vesca	FvH4_1g13880 FvH4_1g13880 FvH4_1g13880 FvH4_1g13880 FvH4_1g13880
malus_domestica	MD15G1266700.v1.1
prunus_persica	Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1
pyrus_communis	pycom02g11970 pycom15g23210
rosa_chinensis	RchiOBHm_Chr2g0102191
rosa_laevigata	RLG00000017087 RLG00000017137
rosa_multiflora	Rmu_co8040408.1_g000001 Rmu_co8264951.1_g000001 Rmu_sc0010937.1_g000010 Rmu_sc0011183.1_g000011 Rmu_sc0020365.1_g000005
rosa_roxburghii	Rroxscaffold_2G00140700 Rroxscaffold_2G00140710 Rroxscaffold_2G00141220
rosa_rugosa	Rorug02G0105200 Rorug02G0105300 Rorug02G0105300 Rorug02G0105300
rosa_samantha	Rh2AG153400 Rh2BG159300 Rh2CG158800 Rh2DG159000
rosa_wichuraiana	Rw2G011980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	635
AccB7I	CCANNNNNTGG	1 cut(s)	647
AccBSI	CCGCTC	1 cut(s)	259
AciI	CCGC	2 cut(s)	122, 259
AcoI	YGGCCR	1 cut(s)	150
AcsI	RAATTY	1 cut(s)	583
AcuI	CTGAAG	2 cut(s)	327, 504
AdeI	CACNNNGTG	1 cut(s)	374
AfaI	GTAC	1 cut(s)	22
AfiI	CCNNNNNNNGG	6 cut(s)	128, 167, 229, 647, 811, 935
AgsI	TTSAA	3 cut(s)	51, 267, 668
AjnI	CCWGG	5 cut(s)	163, 202, 526, 547, 928
AjuI	GAANNNNNNNTTGG	2 cut(s)	61, 93
AloI	GAACNNNNNNTCC	4 cut(s)	123, 124, 155, 156
AluBI	AGCT	8 cut(s)	47, 56, 287, 459, 647, 722, 763, 817
AluI	AGCT	8 cut(s)	47, 56, 287, 459, 647, 722, 763, 817
Alw26I	GTCTC	1 cut(s)	544
AlwNI	CAGNNNCTG	1 cut(s)	527
AoxI	GGCC	2 cut(s)	150, 507
ApeKI	GCWGC	6 cut(s)	106, 287, 608, 817, 922, 925
ApoI	RAATTY	1 cut(s)	583
ArsI	GACNNNNNNTTYG	2 cut(s)	701, 733
AspLEI	GCGC	1 cut(s)	209
AspS9I	GGNCC	3 cut(s)	93, 507, 896
AsuC2I	CCSGG	1 cut(s)	224
AsuHPI	GGTGA	3 cut(s)	389, 665, 950
AvaII	GGWCC	2 cut(s)	93, 896
BaeGI	GKGCMC	1 cut(s)	640
BanI	GGYRCC	1 cut(s)	635
BauI	CACGAG	1 cut(s)	885
BbvI	GCAGC	6 cut(s)	118, 274, 620, 804, 934, 937
BccI	CCATC	6 cut(s)	242, 353, 398, 435, 473, 649
BciT130I	CCWGG	5 cut(s)	165, 204, 528, 549, 930
BciVI	GTATCC	1 cut(s)	168
BcnI	CCSGG	1 cut(s)	224
BcoDI	GTCTC	1 cut(s)	544
BfaI	CTAG	2 cut(s)	186, 723
BfmI	CTRYAG	1 cut(s)	288
BfuI	GTATCC	1 cut(s)	168
BglI	GCCNNNNNGGC	1 cut(s)	515
BisI	GCNGC	7 cut(s)	107, 122, 288, 609, 818, 923, 926
BlsI	GCNGC	7 cut(s)	108, 123, 289, 610, 819, 924, 927
Bme1390I	CCNGG	6 cut(s)	165, 204, 224, 528, 549, 930
Bme18I	GGWCC	2 cut(s)	93, 896
BmgT120I	GGNCC	3 cut(s)	93, 507, 896
BmiI	GGNNCC	3 cut(s)	397, 508, 637
BmrFI	CCNGG	6 cut(s)	165, 204, 224, 528, 549, 930
BmrI	ACTGGG	1 cut(s)	513
BmsI	GCATC	3 cut(s)	108, 118, 459
BmuI	ACTGGG	1 cut(s)	513
BplI	GAGNNNNNCTC	2 cut(s)	383, 415
BpmI	CTGGAG	4 cut(s)	120, 147, 186, 624
Bpu10I	CCTNAGC	2 cut(s)	30, 57
BpuEI	CTTGAG	1 cut(s)	938
BpuMI	CCSGG	1 cut(s)	224
BsaJI	CCNNGG	3 cut(s)	222, 279, 527
Bsc4I	CCNNNNNNNGG	6 cut(s)	128, 167, 229, 647, 811, 935
Bse1I	ACTGG	2 cut(s)	137, 508
Bse3DI	GCAATG	1 cut(s)	796
BseBI	CCWGG	5 cut(s)	165, 204, 528, 549, 930
BseDI	CCNNGG	3 cut(s)	222, 279, 527
BseGI	GGATG	3 cut(s)	109, 181, 587
BseLI	CCNNNNNNNGG	6 cut(s)	128, 167, 229, 647, 811, 935
BseMI	GCAATG	1 cut(s)	796
BseMII	CTCAG	3 cut(s)	71, 820, 822
BseNI	ACTGG	2 cut(s)	137, 508
BseRI	GAGGAG	2 cut(s)	15, 827
BseSI	GKGCMC	1 cut(s)	640
BseXI	GCAGC	6 cut(s)	118, 274, 620, 804, 934, 937
BsgI	GTGCAG	1 cut(s)	803
BshFI	GGCC	2 cut(s)	152, 509
BshNI	GGYRCC	1 cut(s)	635
BsiSI	CCGG	2 cut(s)	149, 224
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	6 cut(s)	128, 167, 229, 647, 811, 935
BsmAI	GTCTC	1 cut(s)	544
BsmFI	GGGAC	1 cut(s)	19
BsmI	GAATGC	1 cut(s)	842
BsnI	GGCC	2 cut(s)	152, 509
Bsp1286I	GDGCHC	1 cut(s)	640
BspACI	CCGC	2 cut(s)	122, 259
BspANI	GGCC	2 cut(s)	152, 509
BspCNI	CTCAG	3 cut(s)	70, 819, 823
BspLI	GGNNCC	3 cut(s)	397, 508, 637
BspMAI	CTGCAG	1 cut(s)	292
BspQI	GCTCTTC	1 cut(s)	753
BspT107I	GGYRCC	1 cut(s)	635
BsrBI	CCGCTC	1 cut(s)	259
BsrDI	GCAATG	1 cut(s)	796
BsrI	ACTGG	2 cut(s)	137, 508
BssECI	CCNNGG	3 cut(s)	222, 279, 527
BssSI	CACGAG	1 cut(s)	885
BssT1I	CCWWGG	1 cut(s)	279
Bst2BI	CACGAG	1 cut(s)	885
Bst2UI	CCWGG	5 cut(s)	165, 204, 528, 549, 930
Bst4CI	ACNGT	1 cut(s)	950
Bst6I	CTCTTC	1 cut(s)	753
BstAPI	GCANNNNNTGC	2 cut(s)	296, 482
BstC8I	GCNNGC	2 cut(s)	474, 747
BstDEI	CTNAG	4 cut(s)	30, 57, 806, 831
BstENI	CCTNNNNNAGG	1 cut(s)	809
BstF5I	GGATG	3 cut(s)	109, 181, 587
BstHHI	GCGC	1 cut(s)	209
BstMAI	GTCTC	1 cut(s)	544
BstMWI	GCNNNNNNNGC	9 cut(s)	53, 296, 305, 482, 515, 532, 608, 644, 823
BstNI	CCWGG	5 cut(s)	165, 204, 528, 549, 930
BstSCI	CCNGG	6 cut(s)	163, 202, 222, 526, 547, 928
BstSFI	CTRYAG	1 cut(s)	288
BstSLI	GKGCMC	1 cut(s)	640
BstV1I	GCAGC	6 cut(s)	118, 274, 620, 804, 934, 937
BsuI	GTATCC	1 cut(s)	168
BsuRI	GGCC	2 cut(s)	152, 509
BtsCI	GGATG	3 cut(s)	109, 181, 587
BtsIMutI	CAGTG	2 cut(s)	501, 528
Cac8I	GCNNGC	2 cut(s)	474, 747
CaiI	CAGNNNCTG	1 cut(s)	527
CfoI	GCGC	1 cut(s)	209
Cfr13I	GGNCC	3 cut(s)	93, 507, 896
Csp6I	GTAC	1 cut(s)	21
CviAII	CATG	1 cut(s)	154
CviQI	GTAC	1 cut(s)	21
DdeI	CTNAG	4 cut(s)	30, 57, 806, 831
DraIII	CACNNNGTG	1 cut(s)	374
EaeI	YGGCCR	1 cut(s)	150
Eam1104I	CTCTTC	1 cut(s)	753
EarI	CTCTTC	1 cut(s)	753
Eco130I	CCWWGG	1 cut(s)	279
Eco47I	GGWCC	2 cut(s)	93, 896
Eco57I	CTGAAG	2 cut(s)	327, 504
EcoNI	CCTNNNNNAGG	1 cut(s)	809
EcoRI	GAATTC	1 cut(s)	583
EcoRII	CCWGG	5 cut(s)	163, 202, 526, 547, 928
EcoT14I	CCWWGG	1 cut(s)	279
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	1 cut(s)	157
FalI	AAGNNNNNCTT	2 cut(s)	443, 475
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	1 cut(s)	153
FauI	CCCGC	1 cut(s)	252
FauNDI	CATATG	1 cut(s)	127
Fnu4HI	GCNGC	7 cut(s)	107, 122, 288, 609, 818, 923, 926
FokI	GGATG	3 cut(s)	96, 168, 574
Fsp4HI	GCNGC	7 cut(s)	107, 122, 288, 609, 818, 923, 926
FspBI	CTAG	2 cut(s)	186, 723
GlaI	GCGC	1 cut(s)	208
GluI	GCNGC	7 cut(s)	107, 122, 288, 609, 818, 923, 926
GsuI	CTGGAG	4 cut(s)	120, 147, 186, 624
HaeIII	GGCC	2 cut(s)	152, 509
HapII	CCGG	2 cut(s)	149, 224
HhaI	GCGC	1 cut(s)	209
Hin1II	CATG	1 cut(s)	157
Hin6I	GCGC	1 cut(s)	207
HinP1I	GCGC	1 cut(s)	207
HindIII	AAGCTT	1 cut(s)	45
HinfI	GANTC	4 cut(s)	199, 664, 716, 796
HpaII	CCGG	2 cut(s)	149, 224
HphI	GGTGA	3 cut(s)	389, 665, 950
Hpy166II	GTNNAC	2 cut(s)	680, 896
Hpy188I	TCNGA	6 cut(s)	247, 403, 561, 809, 832, 856
Hpy188III	TCNNGA	7 cut(s)	59, 86, 196, 351, 431, 668, 732
Hpy8I	GTNNAC	2 cut(s)	680, 896
HpyAV	CCTTC	6 cut(s)	11, 45, 87, 227, 232, 445
HpyCH4III	ACNGT	1 cut(s)	950
HpyCH4IV	ACGT	1 cut(s)	676
HpyCH4V	TGCA	8 cut(s)	106, 290, 299, 443, 476, 485, 491, 820
HpyF10VI	GCNNNNNNNGC	9 cut(s)	53, 296, 305, 482, 515, 532, 608, 644, 823
HpyF3I	CTNAG	4 cut(s)	30, 57, 806, 831
HpySE526I	ACGT	1 cut(s)	676
Hsp92II	CATG	1 cut(s)	157
HspAI	GCGC	1 cut(s)	207
LguI	GCTCTTC	1 cut(s)	753
LmnI	GCTCC	4 cut(s)	284, 456, 605, 814
Lsp1109I	GCAGC	6 cut(s)	118, 274, 620, 804, 934, 937
LweI	GCATC	3 cut(s)	108, 118, 459
MaeI	CTAG	2 cut(s)	186, 723
MaeII	ACGT	1 cut(s)	676
MaeIII	GTNAC	1 cut(s)	193
MbiI	CCGCTC	1 cut(s)	259
MboII	GAAGA	3 cut(s)	26, 770, 887
MhlI	GDGCHC	1 cut(s)	640
MluCI	AATT	2 cut(s)	583, 878
MlyI	GAGTC	2 cut(s)	193, 725
MmeI	TCCRAC	1 cut(s)	210
MslI	CAYNNNNRTG	1 cut(s)	889
MspA1I	CMGCKG	1 cut(s)	647
MspI	CCGG	2 cut(s)	149, 224
MspR9I	CCNGG	6 cut(s)	165, 204, 224, 528, 549, 930
Mva1269I	GAATGC	1 cut(s)	842
MvaI	CCWGG	5 cut(s)	165, 204, 528, 549, 930
MwoI	GCNNNNNNNGC	9 cut(s)	53, 296, 305, 482, 515, 532, 608, 644, 823
NciI	CCSGG	1 cut(s)	224
NdeI	CATATG	1 cut(s)	127
NlaIII	CATG	1 cut(s)	157
NlaIV	GGNNCC	3 cut(s)	397, 508, 637
NmuCI	GTSAC	1 cut(s)	193
PciSI	GCTCTTC	1 cut(s)	753
PctI	GAATGC	1 cut(s)	842
PfeI	GAWTC	2 cut(s)	664, 796
PflMI	CCANNNNNTGG	1 cut(s)	647
PkrI	GCNGC	7 cut(s)	108, 123, 289, 610, 819, 924, 927
PleI	GAGTC	2 cut(s)	193, 724
PpsI	GAGTC	2 cut(s)	193, 724
Psp6I	CCWGG	5 cut(s)	163, 202, 526, 547, 928
PspGI	CCWGG	5 cut(s)	163, 202, 526, 547, 928
PspN4I	GGNNCC	3 cut(s)	397, 508, 637
PspPI	GGNCC	3 cut(s)	93, 507, 896
PsrI	GAACNNNNNNTAC	2 cut(s)	379, 411
PstI	CTGCAG	1 cut(s)	292
PstNI	CAGNNNCTG	1 cut(s)	527
PvuII	CAGCTG	1 cut(s)	647
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
RseI	CAYNNNNRTG	1 cut(s)	889
SapI	GCTCTTC	1 cut(s)	753
SatI	GCNGC	7 cut(s)	107, 122, 288, 609, 818, 923, 926
Sau96I	GGNCC	3 cut(s)	93, 507, 896
SchI	GAGTC	2 cut(s)	193, 725
ScrFI	CCNGG	6 cut(s)	165, 204, 224, 528, 549, 930
SduI	GDGCHC	1 cut(s)	640
SfaNI	GCATC	3 cut(s)	108, 118, 459
SfcI	CTRYAG	1 cut(s)	288
SinI	GGWCC	2 cut(s)	93, 896
SmiMI	CAYNNNNRTG	1 cut(s)	889
SmlI	CTYRAG	1 cut(s)	917
SmoI	CTYRAG	1 cut(s)	917
Sse9I	AATT	2 cut(s)	583, 878
SsiI	CCGC	2 cut(s)	122, 259
SspI	AATATT	1 cut(s)	565
SspMI	CTAG	2 cut(s)	186, 723
StyD4I	CCNGG	6 cut(s)	163, 202, 222, 526, 547, 928
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	950
TaiI	ACGT	1 cut(s)	679
TaqI	TCGA	1 cut(s)	707
TasI	AATT	2 cut(s)	583, 878
TauI	GCSGC	1 cut(s)	124
TfiI	GAWTC	2 cut(s)	664, 796
TscAI	CASTG	2 cut(s)	508, 528
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	6 cut(s)	106, 287, 608, 817, 922, 925
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	2 cut(s)	69, 576
TspGWI	ACGGA	1 cut(s)	754
TspRI	CASTG	2 cut(s)	508, 528
Van91I	CCANNNNNTGG	1 cut(s)	647
VpaK11BI	GGWCC	2 cut(s)	93, 896
XagI	CCTNNNNNAGG	1 cut(s)	809
XapI	RAATTY	1 cut(s)	583
XcmI	CCANNNNNNNNNTGG	1 cut(s)	434
XspI	CTAG	2 cut(s)	186, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.