Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003368

Physical Location & Seq

Genomic Coordinates Reverse (-)

13222521 .. 13226373

Gene Structure 3853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017137

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGGGACAGGGGAAGAGGGCACACCCTCTAAGCCTTCCAAACAAGCTTCTACAGCTCAGGAAATACCTACACAGCCTTCGTATCCTGATTGGTCCAGCTCTATGCAGGCTTATTATGGTGCTGGAGCTGCTCCACCGGCCTTTTTCGCTTCCTCTGTTGCTTCACCAGCACCGCATCCATATATGTGGGGAGCCCAGCATCCTATGATGCCGCCTTATGGAACTCCTGTTCCGTACCCTGCTATGTATCCTCCAGGTGGAGTTTATGCTCATCCGGGTATGGTCACGACTCCTACTTCAGTACCACCAACAAATCCAGAGTCGGAAGGGAAGGGCGCAGATGGGAAAGAGCGAGCTTCAGCCAAAAAACCCAAGGGAGCTGCAGGAAATACAGTTAAGGCTGGGGAGAGTGGAAAAGCAACTTCTGGTTCTGGAAATGATGGAGCTTCACAAAGTGCTGAAAGTGGTAGCGACGGTTCATCAGATGGAAGCGAGGAGAATGGTAACCACCAGGAGTATGGTGCAAACAAGAAGGGAAGTTTTGACAAGATGCTTGCAGATGGAGCAAATGCACAGAATAACACGGCTTTAGTGCCTGGGAAGCCTGTAGTTTCTATGCCTGCAACTAGTCTGAATATGGGAATGGACTTGTGGAATGCATCGCCCGCTGGTGCTGGAACTGCAAAAATGAGAGGAAATCAATCTGGAGCCCCATCAGCTGTCGGTGGTGACCATTGGATTCAGGATGAACGGGAACTGAAAAGACAGAAAAGGAAGCAGTCAAATAGGGAGTCTGCTAGGAGGTCAAGATTGCGGAAGCAGGCGGAGTGTGAAGAGCTACAAAAAAGTGTACAGGGACTGACCAATGAGAATCATGGCCTTAAAGATGAGCTGCAAAGGCTCTCCCAGGAATGCGAGAAGCTTGCGTCTGAAAATACTTCTATAAAGGAAGAGTTGACGCGATTGTGTGGACCAGATTTAGTAGCAAACATTGAACATCAATCTCGTGGCGGTGAGGGCAACAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

343

Amino Acids

35.79

Weight (kDa)

6.2

Isoelectric Point (pI)

55.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFMR	PF07777	1 - 94	5.8e-34	G-box binding protein MFMR
bZIP_1	PF00170	250 - 312	1.7e-20	bZIP transcription factor
bZIP_2	PF07716	252 - 304	2.9e-09	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36730 AT4G36730
fragaria_vesca	FvH4_1g13880 FvH4_1g13880 FvH4_1g13880 FvH4_1g13880 FvH4_1g13880
malus_domestica	MD15G1266700.v1.1
prunus_persica	Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1
pyrus_communis	pycom02g11970 pycom15g23210
rosa_chinensis	RchiOBHm_Chr2g0102191
rosa_laevigata	RLG00000017087 RLG00000017137
rosa_multiflora	Rmu_co8040408.1_g000001 Rmu_co8264951.1_g000001 Rmu_sc0010937.1_g000010 Rmu_sc0011183.1_g000011 Rmu_sc0020365.1_g000005
rosa_roxburghii	Rroxscaffold_2G00140700 Rroxscaffold_2G00140710 Rroxscaffold_2G00141220
rosa_rugosa	Rorug02G0105200 Rorug02G0105300 Rorug02G0105300 Rorug02G0105300
rosa_samantha	Rh2AG153400 Rh2BG159300 Rh2CG158800 Rh2DG159000
rosa_wichuraiana	Rw2G011980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	961
AciI	CCGC	6 cut(s)	173, 212, 666, 814, 824, 1011
AcuI	CTGAAG	2 cut(s)	282, 342
AdeI	CACNNNGTG	1 cut(s)	455
AfaI	GTAC	3 cut(s)	236, 303, 852
AfiI	CCNNNNNNNGG	2 cut(s)	218, 257
AgsI	TTSAA	1 cut(s)	995
AhlI	ACTAGT	1 cut(s)	626
AjnI	CCWGG	4 cut(s)	253, 510, 595, 906
AloI	GAACNNNNNNTCC	4 cut(s)	213, 214, 245, 246
AlwNI	CAGNNNCTG	1 cut(s)	859
AoxI	GGCC	2 cut(s)	138, 877
ApeKI	GCWGC	3 cut(s)	128, 380, 892
ArsI	GACNNNNNNTTYG	4 cut(s)	305, 337, 776, 808
AspLEI	GCGC	1 cut(s)	338
AspS9I	GGNCC	2 cut(s)	93, 971
AsuC2I	CCSGG	1 cut(s)	276
AsuHPI	GGTGA	3 cut(s)	156, 740, 1025
AvaII	GGWCC	2 cut(s)	93, 971
BaeGI	GKGCMC	1 cut(s)	23
BaeI	ACNNNNGTAYC	2 cut(s)	285, 318
BanII	GRGCYC	2 cut(s)	196, 712
BauI	CACGAG	1 cut(s)	1005
BbvI	GCAGC	3 cut(s)	115, 367, 879
BccI	CCATC	5 cut(s)	335, 434, 479, 554, 721
BceAI	ACGGC	1 cut(s)	600
BcgI	CGANNNNNNTGC	2 cut(s)	905, 939
BciT130I	CCWGG	4 cut(s)	255, 512, 597, 908
BciVI	GTATCC	2 cut(s)	93, 258
BcnI	CCSGG	1 cut(s)	276
BcuI	ACTAGT	1 cut(s)	626
BfaI	CTAG	2 cut(s)	627, 798
BfmI	CTRYAG	3 cut(s)	51, 381, 606
BfuI	GTATCC	2 cut(s)	93, 258
BisI	GCNGC	4 cut(s)	129, 212, 381, 893
BlsI	GCNGC	4 cut(s)	130, 213, 382, 894
Bme1390I	CCNGG	5 cut(s)	255, 276, 512, 597, 908
Bme18I	GGWCC	2 cut(s)	93, 971
BmgT120I	GGNCC	2 cut(s)	93, 971
BmiI	GGNNCC	2 cut(s)	193, 709
BmrFI	CCNGG	5 cut(s)	255, 276, 512, 597, 908
BmsI	GCATC	5 cut(s)	184, 198, 208, 540, 668
BpmI	CTGGAG	3 cut(s)	144, 237, 726
Bpu10I	CCTNAGC	1 cut(s)	57
BpuMI	CCSGG	1 cut(s)	276
BsaJI	CCNNGG	3 cut(s)	372, 596, 906
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 257
Bse118I	RCCGGY	1 cut(s)	136
BseBI	CCWGG	4 cut(s)	255, 512, 597, 908
BseDI	CCNNGG	3 cut(s)	372, 596, 906
BseGI	GGATG	4 cut(s)	175, 199, 271, 751
BseLI	CCNNNNNNNGG	2 cut(s)	218, 257
BseMII	CTCAG	1 cut(s)	71
BseRI	GAGGAG	1 cut(s)	509
BseSI	GKGCMC	1 cut(s)	23
BseXI	GCAGC	3 cut(s)	115, 367, 879
BseYI	CCCAGC	2 cut(s)	195, 401
Bsh1236I	CGCG	1 cut(s)	961
BshFI	GGCC	2 cut(s)	140, 879
BsiSI	CCGG	2 cut(s)	137, 275
BslFI	GGGAC	2 cut(s)	19, 870
BslI	CCNNNNNNNGG	2 cut(s)	218, 257
BsmFI	GGGAC	2 cut(s)	19, 870
BsmI	GAATGC	2 cut(s)	661, 917
BsnI	GGCC	2 cut(s)	140, 879
Bsp1286I	GDGCHC	3 cut(s)	23, 196, 712
Bsp1407I	TGTACA	1 cut(s)	850
BspACI	CCGC	6 cut(s)	173, 212, 666, 814, 824, 1011
BspANI	GGCC	2 cut(s)	140, 879
BspCNI	CTCAG	1 cut(s)	70
BspFNI	CGCG	1 cut(s)	961
BspLI	GGNNCC	2 cut(s)	193, 709
BspMAI	CTGCAG	1 cut(s)	385
BspQI	GCTCTTC	1 cut(s)	828
BsrFI	RCCGGY	1 cut(s)	136
BsrGI	TGTACA	1 cut(s)	850
BssAI	RCCGGY	1 cut(s)	136
BssECI	CCNNGG	3 cut(s)	372, 596, 906
BssSI	CACGAG	1 cut(s)	1005
BssT1I	CCWWGG	1 cut(s)	372
Bst2BI	CACGAG	1 cut(s)	1005
Bst2UI	CCWGG	4 cut(s)	255, 512, 597, 908
Bst4CI	ACNGT	3 cut(s)	394, 476, 1025
Bst6I	CTCTTC	3 cut(s)	9, 828, 945
BstAUI	TGTACA	1 cut(s)	850
BstC8I	GCNNGC	7 cut(s)	108, 354, 555, 621, 666, 822, 924
BstDEI	CTNAG	2 cut(s)	30, 57
BstEII	GGTNACC	2 cut(s)	503, 728
BstF5I	GGATG	4 cut(s)	175, 199, 271, 751
BstFNI	CGCG	1 cut(s)	961
BstHHI	GCGC	1 cut(s)	338
BstNI	CCWGG	4 cut(s)	255, 512, 597, 908
BstPI	GGTNACC	2 cut(s)	503, 728
BstSCI	CCNGG	5 cut(s)	253, 274, 510, 595, 906
BstSFI	CTRYAG	3 cut(s)	51, 381, 606
BstSLI	GKGCMC	1 cut(s)	23
BstUI	CGCG	1 cut(s)	961
BstV1I	GCAGC	3 cut(s)	115, 367, 879
BstXI	CCANNNNNNTGG	2 cut(s)	186, 518
BsuI	GTATCC	2 cut(s)	93, 258
BsuRI	GGCC	2 cut(s)	140, 879
BtgZI	GCGATG	1 cut(s)	645
BtsCI	GGATG	4 cut(s)	175, 199, 271, 751
Cac8I	GCNNGC	7 cut(s)	108, 354, 555, 621, 666, 822, 924
CaiI	CAGNNNCTG	1 cut(s)	859
CfoI	GCGC	1 cut(s)	338
Cfr10I	RCCGGY	1 cut(s)	136
Cfr13I	GGNCC	2 cut(s)	93, 971
CseI	GACGC	2 cut(s)	915, 967
Csp6I	GTAC	3 cut(s)	235, 302, 851
CviAII	CATG	1 cut(s)	875
CviQI	GTAC	3 cut(s)	235, 302, 851
DdeI	CTNAG	2 cut(s)	30, 57
DraIII	CACNNNGTG	1 cut(s)	455
Eam1104I	CTCTTC	3 cut(s)	9, 828, 945
EarI	CTCTTC	3 cut(s)	9, 828, 945
EciI	GGCGGA	1 cut(s)	839
Eco130I	CCWWGG	1 cut(s)	372
Eco24I	GRGCYC	2 cut(s)	196, 712
Eco47I	GGWCC	2 cut(s)	93, 971
Eco57I	CTGAAG	2 cut(s)	282, 342
Eco91I	GGTNACC	2 cut(s)	503, 728
EcoO65I	GGTNACC	2 cut(s)	503, 728
EcoRII	CCWGG	4 cut(s)	253, 510, 595, 906
EcoT14I	CCWWGG	1 cut(s)	372
EcoT22I	ATGCAT	1 cut(s)	661
EcoT38I	GRGCYC	2 cut(s)	196, 712
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	1 cut(s)	878
FaqI	GGGAC	2 cut(s)	19, 870
FatI	CATG	1 cut(s)	874
FauI	CCCGC	1 cut(s)	673
Fnu4HI	GCNGC	4 cut(s)	129, 212, 381, 893
FokI	GGATG	4 cut(s)	162, 186, 258, 758
FriOI	GRGCYC	2 cut(s)	196, 712
Fsp4HI	GCNGC	4 cut(s)	129, 212, 381, 893
FspBI	CTAG	2 cut(s)	627, 798
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	4 cut(s)	129, 212, 381, 893
GsaI	CCCAGC	2 cut(s)	199, 405
GsuI	CTGGAG	3 cut(s)	144, 237, 726
HaeIII	GGCC	2 cut(s)	140, 879
HapII	CCGG	2 cut(s)	137, 275
HgaI	GACGC	2 cut(s)	915, 967
HhaI	GCGC	1 cut(s)	338
Hin1II	CATG	1 cut(s)	878
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HincII	GTYRAC	1 cut(s)	957
HindII	GTYRAC	1 cut(s)	957
HindIII	AAGCTT	2 cut(s)	45, 920
HinfI	GANTC	5 cut(s)	289, 320, 739, 791, 871
HpaII	CCGG	2 cut(s)	137, 275
HphI	GGTGA	3 cut(s)	156, 740, 1025
Hpy166II	GTNNAC	3 cut(s)	851, 957, 971
Hpy188I	TCNGA	4 cut(s)	325, 484, 633, 931
Hpy188III	TCNNGA	8 cut(s)	59, 86, 286, 317, 432, 705, 743, 807
Hpy8I	GTNNAC	3 cut(s)	851, 957, 971
Hpy99I	CGWCG	1 cut(s)	476
HpyAV	CCTTC	5 cut(s)	45, 87, 320, 325, 526
HpyCH4III	ACNGT	3 cut(s)	394, 476, 1025
HpyCH4V	TGCA	9 cut(s)	106, 383, 524, 557, 572, 623, 659, 683, 895
HpyF3I	CTNAG	2 cut(s)	30, 57
Hsp92II	CATG	1 cut(s)	878
HspAI	GCGC	1 cut(s)	336
LguI	GCTCTTC	1 cut(s)	828
LmnI	GCTCC	7 cut(s)	125, 136, 191, 377, 443, 563, 707
Lsp1109I	GCAGC	3 cut(s)	115, 367, 879
LweI	GCATC	5 cut(s)	184, 198, 208, 540, 668
MaeI	CTAG	2 cut(s)	627, 798
MaeIII	GTNAC	3 cut(s)	283, 503, 728
MboII	GAAGA	3 cut(s)	26, 845, 962
MhlI	GDGCHC	3 cut(s)	23, 196, 712
MlyI	GAGTC	3 cut(s)	283, 329, 800
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	8 cut(s)	10, 37, 163, 261, 487, 686, 795, 1009
Mph1103I	ATGCAT	1 cut(s)	661
MseI	TTAA	2 cut(s)	396, 882
MslI	CAYNNNNRTG	1 cut(s)	184
MspA1I	CMGCKG	2 cut(s)	668, 719
MspI	CCGG	2 cut(s)	137, 275
MspR9I	CCNGG	5 cut(s)	255, 276, 512, 597, 908
Mva1269I	GAATGC	2 cut(s)	661, 917
MvaI	CCWGG	4 cut(s)	255, 512, 597, 908
MvnI	CGCG	1 cut(s)	961
NciI	CCSGG	1 cut(s)	276
NlaIII	CATG	1 cut(s)	878
NlaIV	GGNNCC	2 cut(s)	193, 709
NmuCI	GTSAC	2 cut(s)	283, 728
NsiI	ATGCAT	1 cut(s)	661
PciSI	GCTCTTC	1 cut(s)	828
PctI	GAATGC	2 cut(s)	661, 917
PfeI	GAWTC	2 cut(s)	739, 871
PkrI	GCNGC	4 cut(s)	130, 213, 382, 894
PleI	GAGTC	3 cut(s)	283, 328, 799
PpsI	GAGTC	3 cut(s)	283, 328, 799
Psp6I	CCWGG	4 cut(s)	253, 510, 595, 906
PspEI	GGTNACC	2 cut(s)	503, 728
PspFI	CCCAGC	2 cut(s)	195, 401
PspGI	CCWGG	4 cut(s)	253, 510, 595, 906
PspN4I	GGNNCC	2 cut(s)	193, 709
PspPI	GGNCC	2 cut(s)	93, 971
PsrI	GAACNNNNNNTAC	2 cut(s)	460, 492
PstI	CTGCAG	1 cut(s)	385
PstNI	CAGNNNCTG	1 cut(s)	859
PvuII	CAGCTG	1 cut(s)	719
RsaI	GTAC	3 cut(s)	236, 303, 852
RsaNI	GTAC	3 cut(s)	235, 302, 851
RseI	CAYNNNNRTG	1 cut(s)	184
SapI	GCTCTTC	1 cut(s)	828
SaqAI	TTAA	2 cut(s)	396, 882
SatI	GCNGC	4 cut(s)	129, 212, 381, 893
Sau96I	GGNCC	2 cut(s)	93, 971
SchI	GAGTC	3 cut(s)	283, 329, 800
ScrFI	CCNGG	5 cut(s)	255, 276, 512, 597, 908
SduI	GDGCHC	3 cut(s)	23, 196, 712
SfaNI	GCATC	5 cut(s)	184, 198, 208, 540, 668
SfcI	CTRYAG	3 cut(s)	51, 381, 606
SinI	GGWCC	2 cut(s)	93, 971
SmiMI	CAYNNNNRTG	1 cut(s)	184
SpeI	ACTAGT	1 cut(s)	626
SsiI	CCGC	6 cut(s)	173, 212, 666, 814, 824, 1011
SspMI	CTAG	2 cut(s)	627, 798
StyD4I	CCNGG	5 cut(s)	253, 274, 510, 595, 906
StyI	CCWWGG	1 cut(s)	372
TaaI	ACNGT	3 cut(s)	394, 476, 1025
TatI	WGTACW	1 cut(s)	850
TauI	GCSGC	1 cut(s)	214
TfiI	GAWTC	2 cut(s)	739, 871
Tru1I	TTAA	2 cut(s)	396, 882
Tru9I	TTAA	2 cut(s)	396, 882
TseFI	GTSAC	2 cut(s)	283, 728
TseI	GCWGC	3 cut(s)	128, 380, 892
Tsp45I	GTSAC	2 cut(s)	283, 728
TspDTI	ATGAA	2 cut(s)	468, 762
TspGWI	ACGGA	1 cut(s)	222
VpaK11BI	GGWCC	2 cut(s)	93, 971
XcmI	CCANNNNNNNNNTGG	1 cut(s)	515
XspI	CTAG	2 cut(s)	627, 798
Zsp2I	ATGCAT	1 cut(s)	661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.