Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003368

Physical Location & Seq

Genomic Coordinates Reverse (-)

13869033 .. 13872913

Gene Structure 3881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG158800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGGGACAGGGGAAGAGGGCACACCCTCTAAGCCTTCCAAACAAGCTTCTACAGCTCAGGAAATACCTACACAGCCTTCGTATCCTGATTGGTCCAGCTCTATGCAGGCTTATTATGGTGCTGGAGCTGCTCCACCGCCCTTTTTCGCTTCCTCTGTTGCTTCACCAGCACCACACCCATATATGTGGGGAGCCCAGGATGAACGGGAACTGAAAAGACAGAAAAGGAAGCAGTCAAATAGGGAGTCTGCTAGGAGGTCAAGATTGCGGAAGCAGGCGGAGTGTGAAGAGCTACAAAAAAGTGTACAGGGACTGACCAATGAGAATCATGGCCTTAAAGATGAGCTGCAAAGGCTCTCCCAGGAATGCGAGAAGCTTGTGTCTGAAAATACTTCTATAAAGGAAGAGTTGACACGATTGTGTGGACCAAATTTAGTAGCAAACATTGAACATCAATCTCGTGGCGGTGAGGGCAACAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

160

Amino Acids

17.7

Weight (kDa)

6.84

Isoelectric Point (pI)

74.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFMR	PF07777	1 - 66	2.9e-19	G-box binding protein MFMR
bZIP_1	PF00170	68 - 130	3.2e-21	bZIP transcription factor
bZIP_2	PF07716	70 - 122	7.6e-10	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36730 AT4G36730
fragaria_vesca	FvH4_1g13880 FvH4_1g13880 FvH4_1g13880 FvH4_1g13880 FvH4_1g13880
malus_domestica	MD15G1266700.v1.1
prunus_persica	Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1
pyrus_communis	pycom02g11970 pycom15g23210
rosa_chinensis	RchiOBHm_Chr2g0102191
rosa_laevigata	RLG00000017087 RLG00000017137
rosa_multiflora	Rmu_co8040408.1_g000001 Rmu_co8264951.1_g000001 Rmu_sc0010937.1_g000010 Rmu_sc0011183.1_g000011 Rmu_sc0020365.1_g000005
rosa_roxburghii	Rroxscaffold_2G00140700 Rroxscaffold_2G00140710 Rroxscaffold_2G00141220
rosa_rugosa	Rorug02G0105200 Rorug02G0105300 Rorug02G0105300 Rorug02G0105300
rosa_samantha	Rh2AG153400 Rh2BG159300 Rh2CG158800 Rh2DG159000
rosa_wichuraiana	Rw2G011980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	137, 268, 278, 465
AcsI	RAATTY	1 cut(s)	430
AfaI	GTAC	1 cut(s)	306
AgsI	TTSAA	1 cut(s)	449
AjnI	CCWGG	2 cut(s)	195, 360
AleI	CACNNNNGTG	1 cut(s)	418
AluBI	AGCT	7 cut(s)	47, 56, 99, 128, 292, 346, 376
AluI	AGCT	7 cut(s)	47, 56, 99, 128, 292, 346, 376
AlwNI	CAGNNNCTG	1 cut(s)	313
AoxI	GGCC	1 cut(s)	331
ApeKI	GCWGC	2 cut(s)	128, 346
ApoI	RAATTY	1 cut(s)	430
ArsI	GACNNNNNNTTYG	2 cut(s)	230, 262
AspS9I	GGNCC	2 cut(s)	93, 425
AsuHPI	GGTGA	2 cut(s)	156, 479
AvaII	GGWCC	2 cut(s)	93, 425
BaeGI	GKGCMC	1 cut(s)	23
BanII	GRGCYC	1 cut(s)	196
BauI	CACGAG	1 cut(s)	459
BbvI	GCAGC	2 cut(s)	115, 333
BciT130I	CCWGG	2 cut(s)	197, 362
BciVI	GTATCC	1 cut(s)	93
BfaI	CTAG	1 cut(s)	252
BfmI	CTRYAG	1 cut(s)	51
BfuI	GTATCC	1 cut(s)	93
BisI	GCNGC	2 cut(s)	129, 347
BlsI	GCNGC	2 cut(s)	130, 348
Bme1390I	CCNGG	2 cut(s)	197, 362
Bme18I	GGWCC	2 cut(s)	93, 425
BmgT120I	GGNCC	2 cut(s)	93, 425
BmiI	GGNNCC	1 cut(s)	193
BmrFI	CCNGG	2 cut(s)	197, 362
BpmI	CTGGAG	1 cut(s)	144
Bpu10I	CCTNAGC	1 cut(s)	57
BsaJI	CCNNGG	2 cut(s)	195, 360
BseBI	CCWGG	2 cut(s)	197, 362
BseDI	CCNNGG	2 cut(s)	195, 360
BseGI	GGATG	1 cut(s)	205
BseMII	CTCAG	1 cut(s)	71
BseSI	GKGCMC	1 cut(s)	23
BseXI	GCAGC	2 cut(s)	115, 333
BshFI	GGCC	1 cut(s)	333
BslFI	GGGAC	2 cut(s)	19, 324
BsmFI	GGGAC	2 cut(s)	19, 324
BsmI	GAATGC	1 cut(s)	371
BsnI	GGCC	1 cut(s)	333
Bsp1286I	GDGCHC	2 cut(s)	23, 196
Bsp1407I	TGTACA	1 cut(s)	304
BspACI	CCGC	4 cut(s)	137, 268, 278, 465
BspANI	GGCC	1 cut(s)	333
BspCNI	CTCAG	1 cut(s)	70
BspLI	GGNNCC	1 cut(s)	193
BspQI	GCTCTTC	1 cut(s)	282
BsrGI	TGTACA	1 cut(s)	304
BssECI	CCNNGG	2 cut(s)	195, 360
BssSI	CACGAG	1 cut(s)	459
Bst2BI	CACGAG	1 cut(s)	459
Bst2UI	CCWGG	2 cut(s)	197, 362
Bst4CI	ACNGT	1 cut(s)	479
Bst6I	CTCTTC	3 cut(s)	9, 282, 399
BstAUI	TGTACA	1 cut(s)	304
BstC8I	GCNNGC	2 cut(s)	108, 276
BstDEI	CTNAG	2 cut(s)	30, 57
BstF5I	GGATG	1 cut(s)	205
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 128, 167, 352, 471
BstNI	CCWGG	2 cut(s)	197, 362
BstSCI	CCNGG	2 cut(s)	195, 360
BstSFI	CTRYAG	1 cut(s)	51
BstSLI	GKGCMC	1 cut(s)	23
BstV1I	GCAGC	2 cut(s)	115, 333
BstXI	CCANNNNNNTGG	1 cut(s)	186
BsuI	GTATCC	1 cut(s)	93
BsuRI	GGCC	1 cut(s)	333
BtsCI	GGATG	1 cut(s)	205
Cac8I	GCNNGC	2 cut(s)	108, 276
CaiI	CAGNNNCTG	1 cut(s)	313
Cfr13I	GGNCC	2 cut(s)	93, 425
Csp6I	GTAC	1 cut(s)	305
CviAII	CATG	1 cut(s)	329
CviQI	GTAC	1 cut(s)	305
DdeI	CTNAG	2 cut(s)	30, 57
Eam1104I	CTCTTC	3 cut(s)	9, 282, 399
EarI	CTCTTC	3 cut(s)	9, 282, 399
EciI	GGCGGA	1 cut(s)	293
Eco24I	GRGCYC	1 cut(s)	196
Eco47I	GGWCC	2 cut(s)	93, 425
EcoRII	CCWGG	2 cut(s)	195, 360
EcoT38I	GRGCYC	1 cut(s)	196
FaeI	CATG	1 cut(s)	332
FaiI	YATR	7 cut(s)	104, 117, 181, 183, 185, 330, 398
FaqI	GGGAC	2 cut(s)	19, 324
FatI	CATG	1 cut(s)	328
Fnu4HI	GCNGC	2 cut(s)	129, 347
FokI	GGATG	1 cut(s)	212
FriOI	GRGCYC	1 cut(s)	196
Fsp4HI	GCNGC	2 cut(s)	129, 347
FspBI	CTAG	1 cut(s)	252
GluI	GCNGC	2 cut(s)	129, 347
GsuI	CTGGAG	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	333
Hin1II	CATG	1 cut(s)	332
HincII	GTYRAC	1 cut(s)	411
HindII	GTYRAC	1 cut(s)	411
HindIII	AAGCTT	2 cut(s)	45, 374
HinfI	GANTC	2 cut(s)	245, 325
HphI	GGTGA	2 cut(s)	156, 479
Hpy166II	GTNNAC	3 cut(s)	305, 411, 425
Hpy188I	TCNGA	1 cut(s)	385
Hpy188III	TCNNGA	3 cut(s)	59, 86, 261
Hpy8I	GTNNAC	3 cut(s)	305, 411, 425
HpyAV	CCTTC	2 cut(s)	45, 87
HpyCH4III	ACNGT	1 cut(s)	479
HpyCH4V	TGCA	2 cut(s)	106, 349
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 128, 167, 352, 471
HpyF3I	CTNAG	2 cut(s)	30, 57
Hsp92II	CATG	1 cut(s)	332
LguI	GCTCTTC	1 cut(s)	282
LmnI	GCTCC	3 cut(s)	125, 136, 191
Lsp1109I	GCAGC	2 cut(s)	115, 333
MaeI	CTAG	1 cut(s)	252
MboII	GAAGA	3 cut(s)	26, 299, 416
MhlI	GDGCHC	2 cut(s)	23, 196
MluCI	AATT	1 cut(s)	430
MlyI	GAGTC	1 cut(s)	254
MnlI	CCTC	5 cut(s)	10, 37, 163, 249, 463
MseI	TTAA	1 cut(s)	336
MslI	CAYNNNNRTG	2 cut(s)	184, 418
MspR9I	CCNGG	2 cut(s)	197, 362
Mva1269I	GAATGC	1 cut(s)	371
MvaI	CCWGG	2 cut(s)	197, 362
MwoI	GCNNNNNNNGC	5 cut(s)	53, 128, 167, 352, 471
NlaIII	CATG	1 cut(s)	332
NlaIV	GGNNCC	1 cut(s)	193
OliI	CACNNNNGTG	1 cut(s)	418
PciSI	GCTCTTC	1 cut(s)	282
PctI	GAATGC	1 cut(s)	371
PfeI	GAWTC	1 cut(s)	325
PkrI	GCNGC	2 cut(s)	130, 348
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
Psp6I	CCWGG	2 cut(s)	195, 360
PspGI	CCWGG	2 cut(s)	195, 360
PspN4I	GGNNCC	1 cut(s)	193
PspPI	GGNCC	2 cut(s)	93, 425
PstNI	CAGNNNCTG	1 cut(s)	313
RsaI	GTAC	1 cut(s)	306
RsaNI	GTAC	1 cut(s)	305
RseI	CAYNNNNRTG	2 cut(s)	184, 418
SapI	GCTCTTC	1 cut(s)	282
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	2 cut(s)	129, 347
Sau96I	GGNCC	2 cut(s)	93, 425
SchI	GAGTC	1 cut(s)	254
ScrFI	CCNGG	2 cut(s)	197, 362
SduI	GDGCHC	2 cut(s)	23, 196
SetI	ASST	9 cut(s)	49, 58, 70, 101, 130, 260, 294, 348, 378
SfcI	CTRYAG	1 cut(s)	51
SinI	GGWCC	2 cut(s)	93, 425
SmiMI	CAYNNNNRTG	2 cut(s)	184, 418
Sse9I	AATT	1 cut(s)	430
SsiI	CCGC	4 cut(s)	137, 268, 278, 465
SspMI	CTAG	1 cut(s)	252
StyD4I	CCNGG	2 cut(s)	195, 360
TaaI	ACNGT	1 cut(s)	479
TasI	AATT	1 cut(s)	430
TatI	WGTACW	1 cut(s)	304
TfiI	GAWTC	1 cut(s)	325
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TseI	GCWGC	2 cut(s)	128, 346
TspDTI	ATGAA	1 cut(s)	216
VpaK11BI	GGWCC	2 cut(s)	93, 425
XapI	RAATTY	1 cut(s)	430
XspI	CTAG	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.