Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8040408.1

Orthogroup ID

OG0003368

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 437

Gene Structure 437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8040408.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ggtgcagatgggaaagagcgagcttcagccaaaaaacccaagggagctgcaggaaatacagttaaggctggggagagtggaaaagcaacttctggttctggaaatgatggagcttcacaaagtgctgaaagtggcagcgagggttcatcagatggaagcgaggagaatggtaaccaccaggtaagtgtgtgccctgcagctaatactccaagatgttcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

73

Amino Acids

6.94

Weight (kDa)

5.72

Isoelectric Point (pI)

20.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36730 AT4G36730
fragaria_vesca	FvH4_1g13880 FvH4_1g13880 FvH4_1g13880 FvH4_1g13880 FvH4_1g13880
malus_domestica	MD15G1266700.v1.1
prunus_persica	Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1 Prupe.7G150700_v2.0.a1
pyrus_communis	pycom02g11970 pycom15g23210
rosa_chinensis	RchiOBHm_Chr2g0102191
rosa_laevigata	RLG00000017087 RLG00000017137
rosa_multiflora	Rmu_co8040408.1_g000001 Rmu_co8264951.1_g000001 Rmu_sc0010937.1_g000010 Rmu_sc0011183.1_g000011 Rmu_sc0020365.1_g000005
rosa_roxburghii	Rroxscaffold_2G00140700 Rroxscaffold_2G00140710 Rroxscaffold_2G00141220
rosa_rugosa	Rorug02G0105200 Rorug02G0105300 Rorug02G0105300 Rorug02G0105300
rosa_samantha	Rh2AG153400 Rh2BG159300 Rh2CG158800 Rh2DG159000
rosa_wichuraiana	Rw2G011980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	9
AdeI	CACNNNGTG	1 cut(s)	122
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	4 cut(s)	23, 47, 113, 200
AluI	AGCT	4 cut(s)	23, 47, 113, 200
ApeKI	GCWGC	3 cut(s)	47, 135, 197
BaeGI	GKGCMC	1 cut(s)	194
BbvI	GCAGC	3 cut(s)	34, 147, 209
BccI	CCATC	3 cut(s)	2, 101, 146
BciT130I	CCWGG	1 cut(s)	179
BfmI	CTRYAG	2 cut(s)	48, 195
BisI	GCNGC	3 cut(s)	48, 136, 198
BlsI	GCNGC	3 cut(s)	49, 137, 199
Bme1390I	CCNGG	1 cut(s)	179
BmrFI	CCNGG	1 cut(s)	179
BsaJI	CCNNGG	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	39
BseRI	GAGGAG	1 cut(s)	176
BseSI	GKGCMC	1 cut(s)	194
BseXI	GCAGC	3 cut(s)	34, 147, 209
BseYI	CCCAGC	1 cut(s)	68
BsgI	GTGCAG	1 cut(s)	24
Bsp1286I	GDGCHC	1 cut(s)	194
BspMAI	CTGCAG	2 cut(s)	52, 199
BssECI	CCNNGG	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	1 cut(s)	61
BstC8I	GCNNGC	1 cut(s)	21
BstEII	GGTNACC	1 cut(s)	170
BstNI	CCWGG	1 cut(s)	179
BstPI	GGTNACC	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	177
BstSFI	CTRYAG	2 cut(s)	48, 195
BstSLI	GKGCMC	1 cut(s)	194
BstV1I	GCAGC	3 cut(s)	34, 147, 209
Cac8I	GCNNGC	1 cut(s)	21
CsiI	ACCWGGT	1 cut(s)	177
CviJI	RGCY	6 cut(s)	23, 29, 47, 68, 113, 200
CviKI_1	RGCY	6 cut(s)	23, 29, 47, 68, 113, 200
DraIII	CACNNNGTG	1 cut(s)	122
Eco130I	CCWWGG	1 cut(s)	39
Eco57I	CTGAAG	1 cut(s)	9
Eco91I	GGTNACC	1 cut(s)	170
EcoO65I	GGTNACC	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
FalI	AAGNNNNNCTT	1 cut(s)	202
Fnu4HI	GCNGC	3 cut(s)	48, 136, 198
Fsp4HI	GCNGC	3 cut(s)	48, 136, 198
GluI	GCNGC	3 cut(s)	48, 136, 198
GsaI	CCCAGC	1 cut(s)	72
Hpy188I	TCNGA	1 cut(s)	151
Hpy188III	TCNNGA	2 cut(s)	99, 219
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4V	TGCA	3 cut(s)	5, 50, 197
LmnI	GCTCC	2 cut(s)	44, 110
LpnPI	CCDG	7 cut(s)	36, 54, 78, 84, 164, 191, 207
Lsp1109I	GCAGC	3 cut(s)	34, 147, 209
MabI	ACCWGGT	1 cut(s)	177
MaeIII	GTNAC	1 cut(s)	170
MhlI	GDGCHC	1 cut(s)	194
MnlI	CCTC	2 cut(s)	133, 154
MseI	TTAA	1 cut(s)	63
MspR9I	CCNGG	1 cut(s)	179
MvaI	CCWGG	1 cut(s)	179
PkrI	GCNGC	3 cut(s)	49, 137, 199
Psp6I	CCWGG	1 cut(s)	177
PspEI	GGTNACC	1 cut(s)	170
PspFI	CCCAGC	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	177
PstI	CTGCAG	2 cut(s)	52, 199
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	3 cut(s)	48, 136, 198
ScrFI	CCNGG	1 cut(s)	179
SduI	GDGCHC	1 cut(s)	194
SetI	ASST	5 cut(s)	25, 49, 115, 183, 202
SexAI	ACCWGGT	1 cut(s)	177
SfcI	CTRYAG	2 cut(s)	48, 195
StyD4I	CCNGG	1 cut(s)	177
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	1 cut(s)	61
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TseI	GCWGC	3 cut(s)	47, 135, 197
TspDTI	ATGAA	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.