Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001583

Physical Location & Seq

Genomic Coordinates Forward (+)

8952648 .. 8958805

Gene Structure 6158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0105200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1704 bp

ATGGTACGTATACGATCATCAGGCCACGATTTCAAGCCTTCGTCTTCTCCGATTCCAAACCAGGAAATGAGTGAAACCAAGGAAAAGGAGGATACTGGAGAGGATATAGCAGTTGATGGTTCAGATAGTGCCCGAAAAACCGAGAATAGTGAGCAGGAAGATTCTTTTCATTCTGTCCGGGAAACAATTGACAATGGAGAAACTGTACCCGAAAAGACGGATATTGAGATGACAGCAGCTGATGAAGATAATGTAGTAGAATCTGGAAAAGGCCAGGAAACCCCAAAACCAACTGACAATGGAGAAACTCTACGCGAAAACACGGATATTGAGATGACAGCAGCTGATGAAGCTAATGTAGGACCACAGTCCACTTCGGGCCAATCCGGTCAAGAGCCTCCTCCTCCTCCTCCCTTGGTCCCAGAAAAGGGAGATGATGGAGAGTTAGTTAAGCAGGGTGGTGATACCTTGAATGATGATGATCAAGAGTTGGACAAGCCAGGTGATGAGCCCCCGTCAGATGTAAAGACTGAGATGCGGGATTTGCCTCAAAATAGTGATAATGGCTGTGAGGAGAATGCTGAGCCAAATAGTGGTGCTGCTGGAGATATCATAACTGCGAGCAATAATGAACCTGCTACGCCTCATGCTGGATTTTCTGATATAAAAGCTGAAAATAAGAATGGGAAAGAGTTGGAGAATAAGGTGAATGGAAAAGAAGTTACTACACCCATGAACAATGGAAAGTCAAGCTCGAAGTACATGTTTCTTTCCGATGACAGCCACACGTATGATGGTAATGACTCGGGAACAGAAGAGGAACAATTGGATTTCATGAAGGAGATTGAAAATTTCTTCAAGGAGAGGAGCATGGAATTTAAACCTCCTAAGTTCTATGGAGACTGTGTGAATTGCCTTAAGCTGTATAAAATTGTGACTAGACTGGGAGGCTATGATAAGGTGACCTCAGCTAAGCTGTGGAAGCAAGTGGGAGCGTCCTTTAAACCTCCAAGGACATGCACTACAATTTCATGGTCATTCAGAGGTTTCTACGAGAAGGCACTCCTTGATTATGAAAAGCATGAAATGCATGGTGGTGAGCTCAGTATACCTATCCCTTCCCAGCCAAAGCGTATTAATATTGATAATCGGGCTTCCGGATCAGGTAGAACAAGAAGGGATGCTGCAGCACGTGCCATGCAAGGTTGGCACTCACAACGTCTCCTTGGTAATGGTGAAGTCAGTGAACCGATCATAAAGGATAAAAATGCTAATGCTTTGCAAAAGCAAGAAAAGCAGCTTAAAACCAGTGGTTCACATAAAAGAAAGAAGCCACCCAATGTGGATCCTGTGGTACAGGCTGCACGTACTAAACCAACAAAGTTACAATTGGATGTAGATGTTTCTGATCTCGGACCTCCAGCAGATTGGGTGAAGGTCAATGTGCAAAAGACTAAAGATTGTTTTGAGGTCTATGCTTTAGTACCAGGACTTCTACGTGAGGAGGTGCGTGTTCAGACAGATCCAGCTGGGCGACTGGTTATAAGTGGTGAACCTGAGCATCCTGATAATCCATGGGGTGTCACACCTTTCAAAAAGGCTGTCTCCTTACCATCCAGAATTGATCCTCACCATACATCGGCCGTGGTCACCCTGCATGGACAGTTGTTTGTTCGTGTCCCGTTTGAGCAGTCGGAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

567

Amino Acids

62.45

Weight (kDa)

4.93

Isoelectric Point (pI)

43.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARID	PF01388	275 - 359	1.9e-19	ARID/BRIGHT DNA binding domain
HSP20	PF00011	483 - 566	6.6e-06	Hsp20/alpha crystallin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36720
fragaria_vesca	FvH4_1g13870 FvH4_1g13870 FvH4_1g13870 FvH4_1g13870 FvH4_1g13870 FvH4_1g13870 FvH4_1g13870 FvH4_1g13870 FvH4_1g13870 FvH4_2g08300
malus_domestica	MD10G1080600.v1.1
prunus_persica	Prupe.7G150800_v2.0.a1 Prupe.7G150800_v2.0.a1 Prupe.8G101900_v2.0.a1 Prupe.8G101900_v2.0.a1
pyrus_communis	pycom02g11960 pycom10g06380
rosa_chinensis	RchiOBHm_Chr2g0102181 RchiOBHm_Chr6g0263171
rosa_laevigata	RLG00000014366 RLG00000017086 RLG00000017136
rosa_multiflora	Rmu_co8296953.1_g000001 Rmu_sc0000157.1_g000044 Rmu_sc0002481.1_g000058 Rmu_sc0023885.1_g000001
rosa_roxburghii	Rroxscaffold_176G00430980 Rroxscaffold_176G00430990 Rroxscaffold_2G00140720 Rroxscaffold_7G00204600
rosa_rugosa	Rorug02G0105000 Rorug02G0105100 Rorug02G0105100 Rorug02G0105200 Rorug06G0004000
rosa_samantha	Rh2AG147700 Rh2AG153300 Rh2BG153000 Rh2BG159200 Rh2CG158700 Rh2DG153300 Rh2DG158900 Rh6AG123200 Rh6BG118200 Rh6CG116400 Rh6DG104900
rosa_wichuraiana	Rw2G011510 Rw2G011970 Rw6G010590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1544
Acc36I	ACCTGC	1 cut(s)	643
AccB7I	CCANNNNNTGG	1 cut(s)	593
AccI	GTMKAC	2 cut(s)	10, 1108
AccII	CGCG	1 cut(s)	315
AccIII	TCCGGA	1 cut(s)	1157
AciI	CCGC	1 cut(s)	538
AclWI	GGATC	5 cut(s)	1168, 1340, 1353, 1517, 1619
AcoI	YGGCCR	1 cut(s)	1641
AcsI	RAATTY	2 cut(s)	850, 875
AcvI	CACGTG	1 cut(s)	1193
AfaI	GTAC	6 cut(s)	6, 207, 761, 1356, 1369, 1485
AfiI	CCNNNNNNNGG	5 cut(s)	427, 428, 593, 650, 1639
AflII	CTTAAG	1 cut(s)	917
AflIII	ACRYGT	2 cut(s)	762, 786
AgsI	TTSAA	5 cut(s)	34, 472, 848, 859, 1594
AjnI	CCWGG	4 cut(s)	60, 273, 499, 1486
Alw21I	GWGCWC	1 cut(s)	1104
Alw26I	GTCTC	3 cut(s)	894, 1226, 1609
AlwI	GGATC	5 cut(s)	1168, 1340, 1353, 1517, 1619
AlwNI	CAGNNNCTG	2 cut(s)	239, 344
Ama87I	CYCGRG	1 cut(s)	805
Aor13HI	TCCGGA	1 cut(s)	1157
AoxI	GGCC	4 cut(s)	22, 271, 379, 1641
ApeKI	GCWGC	7 cut(s)	236, 341, 599, 1184, 1187, 1297, 1361
ApoI	RAATTY	2 cut(s)	850, 875
ArsI	GACNNNNNNTTYG	2 cut(s)	1587, 1619
AseI	ATTAAT	1 cut(s)	1137
AspS9I	GGNCC	4 cut(s)	362, 379, 418, 1415
AsuC2I	CCSGG	1 cut(s)	179
AvaI	CYCGRG	1 cut(s)	805
AvaII	GGWCC	3 cut(s)	362, 418, 1415
BaeGI	GKGCMC	1 cut(s)	133
BamHI	GGATCC	1 cut(s)	1345
BanII	GRGCYC	2 cut(s)	513, 1104
BarI	GAAGNNNNNNTAC	2 cut(s)	1476, 1508
BbrPI	CACGTG	1 cut(s)	1193
BbsI	GAAGAC	1 cut(s)	36
Bbv12I	GWGCWC	1 cut(s)	1104
BbvCI	CCTCAGC	1 cut(s)	967
BbvI	GCAGC	7 cut(s)	248, 353, 586, 1171, 1199, 1309, 1348
BccI	CCATC	4 cut(s)	110, 431, 788, 1621
BceAI	ACGGC	1 cut(s)	1628
BciT130I	CCWGG	4 cut(s)	62, 275, 501, 1488
BciVI	GTATCC	1 cut(s)	85
BclI	TGATCA	1 cut(s)	481
BcnI	CCSGG	1 cut(s)	179
BcoDI	GTCTC	3 cut(s)	894, 1226, 1609
BfaI	CTAG	1 cut(s)	939
BfmI	CTRYAG	1 cut(s)	1185
BfrI	CTTAAG	1 cut(s)	917
BfuAI	ACCTGC	1 cut(s)	643
BfuI	GTATCC	1 cut(s)	85
BisI	GCNGC	7 cut(s)	237, 342, 600, 1185, 1188, 1298, 1362
BlpI	GCTNAGC	2 cut(s)	582, 972
BlsI	GCNGC	7 cut(s)	238, 343, 601, 1186, 1189, 1299, 1363
Bme1390I	CCNGG	5 cut(s)	62, 179, 275, 501, 1488
Bme18I	GGWCC	3 cut(s)	362, 418, 1415
BmeT110I	CYCGRG	1 cut(s)	805
BmgT120I	GGNCC	4 cut(s)	362, 379, 418, 1415
BmiI	GGNNCC	2 cut(s)	420, 1347
BmrFI	CCNGG	5 cut(s)	62, 179, 275, 501, 1488
BmrI	ACTGGG	1 cut(s)	953
BmsI	GCATC	3 cut(s)	525, 1171, 1570
BmuI	ACTGGG	1 cut(s)	953
BoxI	GACNNNNGTC	1 cut(s)	367
BpiI	GAAGAC	1 cut(s)	36
BpmI	CTGGAG	3 cut(s)	117, 624, 1404
Bpu10I	CCTNAGC	2 cut(s)	967, 1557
Bpu1102I	GCTNAGC	2 cut(s)	582, 972
BpuMI	CCSGG	1 cut(s)	179
BsaAI	YACGTR	5 cut(s)	8, 789, 1193, 1367, 1499
BsaBI	GATNNNNATC	1 cut(s)	480
BsaJI	CCNNGG	6 cut(s)	78, 414, 1010, 1225, 1574, 1644
BsaWI	WCCGGW	2 cut(s)	386, 1157
BsaXI	ACNNNNNCTCC	8 cut(s)	189, 219, 432, 462, 891, 921, 1206, 1236
Bsc4I	CCNNNNNNNGG	5 cut(s)	427, 428, 593, 650, 1639
Bse1I	ACTGG	4 cut(s)	100, 948, 1308, 1542
Bse8I	GATNNNNATC	1 cut(s)	480
BseAI	TCCGGA	1 cut(s)	1157
BseBI	CCWGG	4 cut(s)	62, 275, 501, 1488
BseDI	CCNNGG	6 cut(s)	78, 414, 1010, 1225, 1574, 1644
BseGI	GGATG	4 cut(s)	1186, 1399, 1561, 1613
BseJI	GATNNNNATC	1 cut(s)	480
BseLI	CCNNNNNNNGG	5 cut(s)	427, 428, 593, 650, 1639
BseMII	CTCAG	5 cut(s)	522, 573, 981, 1117, 1548
BseNI	ACTGG	4 cut(s)	100, 948, 1308, 1542
BseRI	GAGGAG	7 cut(s)	390, 393, 396, 399, 587, 880, 1517
BseSI	GKGCMC	1 cut(s)	133
BseX3I	CGGCCG	1 cut(s)	1641
BseXI	GCAGC	7 cut(s)	248, 353, 586, 1171, 1199, 1309, 1348
BseYI	CCCAGC	2 cut(s)	1122, 1529
BsgI	GTGCAG	1 cut(s)	1347
Bsh1236I	CGCG	1 cut(s)	315
Bsh1285I	CGRYCG	1 cut(s)	1644
BshFI	GGCC	4 cut(s)	24, 273, 381, 1643
BsiEI	CGRYCG	1 cut(s)	1644
BsiHKAI	GWGCWC	1 cut(s)	1104
BsiHKCI	CYCGRG	1 cut(s)	805
BsiSI	CCGG	3 cut(s)	178, 387, 1158
BslFI	GGGAC	2 cut(s)	404, 1664
BslI	CCNNNNNNNGG	5 cut(s)	427, 428, 593, 650, 1639
BsmAI	GTCTC	3 cut(s)	894, 1226, 1609
BsmBI	CGTCTC	1 cut(s)	1226
BsmFI	GGGAC	2 cut(s)	404, 1664
BsmI	GAATGC	1 cut(s)	583
BsnI	GGCC	4 cut(s)	24, 273, 381, 1643
BsoBI	CYCGRG	1 cut(s)	805
Bsp1286I	GDGCHC	3 cut(s)	133, 513, 1104
Bsp13I	TCCGGA	1 cut(s)	1157
Bsp143I	GATC	8 cut(s)	14, 481, 1160, 1251, 1345, 1408, 1522, 1624
Bsp1720I	GCTNAGC	2 cut(s)	582, 972
Bsp19I	CCATGG	1 cut(s)	1574
BspACI	CCGC	1 cut(s)	538
BspANI	GGCC	4 cut(s)	24, 273, 381, 1643
BspCNI	CTCAG	5 cut(s)	523, 574, 980, 1116, 1549
BspEI	TCCGGA	1 cut(s)	1157
BspFNI	CGCG	1 cut(s)	315
BspHI	TCATGA	1 cut(s)	834
BspLI	GGNNCC	2 cut(s)	420, 1347
BspMAI	CTGCAG	1 cut(s)	1189
BspMI	ACCTGC	1 cut(s)	643
BspPI	GGATC	5 cut(s)	1168, 1340, 1353, 1517, 1619
BspTI	CTTAAG	1 cut(s)	917
BsrI	ACTGG	4 cut(s)	100, 948, 1308, 1542
BssECI	CCNNGG	6 cut(s)	78, 414, 1010, 1225, 1574, 1644
BssMI	GATC	8 cut(s)	14, 481, 1160, 1251, 1345, 1408, 1522, 1624
BssNAI	GTATAC	2 cut(s)	11, 1109
BssT1I	CCWWGG	5 cut(s)	78, 414, 1010, 1225, 1574
Bst1107I	GTATAC	2 cut(s)	11, 1109
Bst2UI	CCWGG	4 cut(s)	62, 275, 501, 1488
Bst4CI	ACNGT	5 cut(s)	205, 369, 905, 1665, 1701
Bst6I	CTCTTC	1 cut(s)	810
BstAFI	CTTAAG	1 cut(s)	917
BstAPI	GCANNNNNTGC	2 cut(s)	1087, 1193
BstBAI	YACGTR	5 cut(s)	8, 789, 1193, 1367, 1499
BstC8I	GCNNGC	1 cut(s)	622
BstDEI	CTNAG	7 cut(s)	531, 582, 888, 967, 972, 1103, 1557
BstDSI	CCRYGG	2 cut(s)	1574, 1644
BstEII	GGTNACC	2 cut(s)	961, 1648
BstF5I	GGATG	4 cut(s)	1186, 1399, 1561, 1613
BstFNI	CGCG	1 cut(s)	315
BstKTI	GATC	8 cut(s)	17, 484, 1163, 1254, 1348, 1411, 1525, 1627
BstMAI	GTCTC	3 cut(s)	894, 1226, 1609
BstMBI	GATC	8 cut(s)	14, 481, 1160, 1251, 1345, 1408, 1522, 1624
BstMCI	CGRYCG	1 cut(s)	1644
BstMWI	GCNNNNNNNGC	7 cut(s)	350, 544, 982, 1087, 1193, 1207, 1294
BstNI	CCWGG	4 cut(s)	62, 275, 501, 1488
BstNSI	RCATGY	2 cut(s)	766, 1020
BstPAI	GACNNNNGTC	1 cut(s)	367
BstPI	GGTNACC	2 cut(s)	961, 1648
BstSCI	CCNGG	5 cut(s)	60, 177, 273, 499, 1486
BstSFI	CTRYAG	1 cut(s)	1185
BstSLI	GKGCMC	1 cut(s)	133
BstSNI	TACGTA	1 cut(s)	8
BstUI	CGCG	1 cut(s)	315
BstV1I	GCAGC	7 cut(s)	248, 353, 586, 1171, 1199, 1309, 1348
BstV2I	GAAGAC	1 cut(s)	36
BstX2I	RGATCY	2 cut(s)	1345, 1522
BstXI	CCANNNNNNTGG	1 cut(s)	1428
BstYI	RGATCY	2 cut(s)	1345, 1522
BstZ17I	GTATAC	2 cut(s)	11, 1109
BstZI	CGGCCG	1 cut(s)	1641
BsuI	GTATCC	1 cut(s)	85
BsuRI	GGCC	4 cut(s)	24, 273, 381, 1643
BtgI	CCRYGG	2 cut(s)	1574, 1644
BtsCI	GGATG	4 cut(s)	1186, 1399, 1561, 1613
BtsIMutI	CAGTG	2 cut(s)	1249, 1315
BveI	ACCTGC	1 cut(s)	643
Cac8I	GCNNGC	1 cut(s)	622
CaiI	CAGNNNCTG	2 cut(s)	239, 344
CciI	TCATGA	1 cut(s)	834
Cfr13I	GGNCC	4 cut(s)	362, 379, 418, 1415
CseI	GACGC	1 cut(s)	984
Csp6I	GTAC	6 cut(s)	5, 206, 760, 1355, 1368, 1484
CviQI	GTAC	6 cut(s)	5, 206, 760, 1355, 1368, 1484
DdeI	CTNAG	7 cut(s)	531, 582, 888, 967, 972, 1103, 1557
DpnI	GATC	8 cut(s)	16, 483, 1162, 1253, 1347, 1410, 1524, 1626
DpnII	GATC	8 cut(s)	14, 481, 1160, 1251, 1345, 1408, 1522, 1624
DraI	TTTAAA	2 cut(s)	880, 1003
EaeI	YGGCCR	1 cut(s)	1641
EagI	CGGCCG	1 cut(s)	1641
Eam1104I	CTCTTC	1 cut(s)	810
EarI	CTCTTC	1 cut(s)	810
Ecl136II	GAGCTC	1 cut(s)	1102
EclXI	CGGCCG	1 cut(s)	1641
Eco105I	TACGTA	1 cut(s)	8
Eco130I	CCWWGG	5 cut(s)	78, 414, 1010, 1225, 1574
Eco24I	GRGCYC	2 cut(s)	513, 1104
Eco32I	GATATC	1 cut(s)	610
Eco47I	GGWCC	3 cut(s)	362, 418, 1415
Eco52I	CGGCCG	1 cut(s)	1641
Eco53kI	GAGCTC	1 cut(s)	1102
Eco72I	CACGTG	1 cut(s)	1193
Eco88I	CYCGRG	1 cut(s)	805
Eco91I	GGTNACC	2 cut(s)	961, 1648
EcoICRI	GAGCTC	1 cut(s)	1102
EcoO65I	GGTNACC	2 cut(s)	961, 1648
EcoRII	CCWGG	4 cut(s)	60, 273, 499, 1486
EcoRV	GATATC	1 cut(s)	610
EcoT14I	CCWWGG	5 cut(s)	78, 414, 1010, 1225, 1574
EcoT22I	ATGCAT	1 cut(s)	1092
EcoT38I	GRGCYC	2 cut(s)	513, 1104
ErhI	CCWWGG	5 cut(s)	78, 414, 1010, 1225, 1574
Esp3I	CGTCTC	1 cut(s)	1226
FaqI	GGGAC	2 cut(s)	404, 1664
FauI	CCCGC	1 cut(s)	531
FbaI	TGATCA	1 cut(s)	481
FblI	GTMKAC	2 cut(s)	10, 1108
Fnu4HI	GCNGC	7 cut(s)	237, 342, 600, 1185, 1188, 1298, 1362
FokI	GGATG	4 cut(s)	1193, 1406, 1548, 1600
FriOI	GRGCYC	2 cut(s)	513, 1104
Fsp4HI	GCNGC	7 cut(s)	237, 342, 600, 1185, 1188, 1298, 1362
FspBI	CTAG	1 cut(s)	939
GluI	GCNGC	7 cut(s)	237, 342, 600, 1185, 1188, 1298, 1362
GsaI	CCCAGC	2 cut(s)	1126, 1533
GsuI	CTGGAG	3 cut(s)	117, 624, 1404
HaeIII	GGCC	4 cut(s)	24, 273, 381, 1643
HapII	CCGG	3 cut(s)	178, 387, 1158
HgaI	GACGC	1 cut(s)	984
HinfI	GANTC	4 cut(s)	52, 161, 260, 803
HpaII	CCGG	3 cut(s)	178, 387, 1158
Hpy166II	GTNNAC	6 cut(s)	11, 372, 1109, 1247, 1316, 1553
Hpy188III	TCNNGA	8 cut(s)	264, 392, 485, 807, 835, 1158, 1565, 1617
Hpy8I	GTNNAC	6 cut(s)	11, 372, 1109, 1247, 1316, 1553
HpyAV	CCTTC	6 cut(s)	48, 832, 1051, 1128, 1170, 1429
HpyCH4III	ACNGT	5 cut(s)	205, 369, 905, 1665, 1701
HpyCH4IV	ACGT	6 cut(s)	7, 788, 1192, 1219, 1366, 1498
HpyCH4V	TGCA	8 cut(s)	1020, 1090, 1187, 1201, 1282, 1364, 1447, 1657
HpyF10VI	GCNNNNNNNGC	7 cut(s)	350, 544, 982, 1087, 1193, 1207, 1294
HpyF3I	CTNAG	7 cut(s)	531, 582, 888, 967, 972, 1103, 1557
HpySE526I	ACGT	6 cut(s)	7, 788, 1192, 1219, 1366, 1498
Kpn2I	TCCGGA	1 cut(s)	1157
Ksp22I	TGATCA	1 cut(s)	481
Kzo9I	GATC	8 cut(s)	14, 481, 1160, 1251, 1345, 1408, 1522, 1624
LmnI	GCTCC	2 cut(s)	867, 992
Lsp1109I	GCAGC	7 cut(s)	248, 353, 586, 1171, 1199, 1309, 1348
LweI	GCATC	3 cut(s)	525, 1171, 1570
MaeI	CTAG	1 cut(s)	939
MaeII	ACGT	6 cut(s)	7, 788, 1192, 1219, 1366, 1498
MaeIII	GTNAC	6 cut(s)	721, 934, 961, 1383, 1582, 1648
MalI	GATC	8 cut(s)	16, 483, 1162, 1253, 1347, 1410, 1524, 1626
MboI	GATC	8 cut(s)	14, 481, 1160, 1251, 1345, 1408, 1522, 1624
MboII	GAAGA	5 cut(s)	36, 170, 257, 827, 847
MfeI	CAATTG	3 cut(s)	186, 824, 1388
MflI	RGATCY	2 cut(s)	1345, 1522
MhlI	GDGCHC	3 cut(s)	133, 513, 1104
MluCI	AATT	9 cut(s)	186, 824, 850, 875, 910, 930, 1026, 1388, 1620
MlyI	GAGTC	1 cut(s)	797
MmeI	TCCRAC	3 cut(s)	471, 675, 1674
Mph1103I	ATGCAT	1 cut(s)	1092
MroI	TCCGGA	1 cut(s)	1157
MseI	TTAA	6 cut(s)	450, 879, 918, 1002, 1137, 1302
MslI	CAYNNNNRTG	2 cut(s)	789, 1095
MspA1I	CMGCKG	3 cut(s)	239, 344, 1529
MspCI	CTTAAG	1 cut(s)	917
MspI	CCGG	3 cut(s)	178, 387, 1158
MspR9I	CCNGG	5 cut(s)	62, 179, 275, 501, 1488
MunI	CAATTG	3 cut(s)	186, 824, 1388
Mva1269I	GAATGC	1 cut(s)	583
MvaI	CCWGG	4 cut(s)	62, 275, 501, 1488
MvnI	CGCG	1 cut(s)	315
MwoI	GCNNNNNNNGC	7 cut(s)	350, 544, 982, 1087, 1193, 1207, 1294
NciI	CCSGG	1 cut(s)	179
NcoI	CCATGG	1 cut(s)	1574
NdeII	GATC	8 cut(s)	14, 481, 1160, 1251, 1345, 1408, 1522, 1624
NlaIV	GGNNCC	2 cut(s)	420, 1347
NmuCI	GTSAC	4 cut(s)	934, 961, 1582, 1648
NsiI	ATGCAT	1 cut(s)	1092
NspI	RCATGY	2 cut(s)	766, 1020
PagI	TCATGA	1 cut(s)	834
PciI	ACATGT	1 cut(s)	762
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
PctI	GAATGC	1 cut(s)	583
PfeI	GAWTC	3 cut(s)	52, 161, 260
PflMI	CCANNNNNTGG	1 cut(s)	593
PfoI	TCCNGGA	1 cut(s)	177
PkrI	GCNGC	7 cut(s)	238, 343, 601, 1186, 1189, 1299, 1363
PleI	GAGTC	1 cut(s)	797
PmaCI	CACGTG	1 cut(s)	1193
PmlI	CACGTG	1 cut(s)	1193
PpsI	GAGTC	1 cut(s)	797
Ppu21I	YACGTR	5 cut(s)	8, 789, 1193, 1367, 1499
PscI	ACATGT	1 cut(s)	762
PshAI	GACNNNNGTC	1 cut(s)	367
PshBI	ATTAAT	1 cut(s)	1137
PsiI	TTATAA	1 cut(s)	1544
Psp124BI	GAGCTC	1 cut(s)	1104
Psp6I	CCWGG	4 cut(s)	60, 273, 499, 1486
PspCI	CACGTG	1 cut(s)	1193
PspEI	GGTNACC	2 cut(s)	961, 1648
PspFI	CCCAGC	2 cut(s)	1122, 1529
PspGI	CCWGG	4 cut(s)	60, 273, 499, 1486
PspN4I	GGNNCC	2 cut(s)	420, 1347
PspPI	GGNCC	4 cut(s)	362, 379, 418, 1415
PstI	CTGCAG	1 cut(s)	1189
PstNI	CAGNNNCTG	2 cut(s)	239, 344
PsuI	RGATCY	2 cut(s)	1345, 1522
PvuII	CAGCTG	3 cut(s)	239, 344, 1529
RsaI	GTAC	6 cut(s)	6, 207, 761, 1356, 1369, 1485
RsaNI	GTAC	6 cut(s)	5, 206, 760, 1355, 1368, 1484
RseI	CAYNNNNRTG	2 cut(s)	789, 1095
SacI	GAGCTC	1 cut(s)	1104
SaqAI	TTAA	6 cut(s)	450, 879, 918, 1002, 1137, 1302
SatI	GCNGC	7 cut(s)	237, 342, 600, 1185, 1188, 1298, 1362
Sau3AI	GATC	8 cut(s)	14, 481, 1160, 1251, 1345, 1408, 1522, 1624
Sau96I	GGNCC	4 cut(s)	362, 379, 418, 1415
SchI	GAGTC	1 cut(s)	797
ScrFI	CCNGG	5 cut(s)	62, 179, 275, 501, 1488
SduI	GDGCHC	3 cut(s)	133, 513, 1104
SfaNI	GCATC	3 cut(s)	525, 1171, 1570
SfcI	CTRYAG	1 cut(s)	1185
SinI	GGWCC	3 cut(s)	362, 418, 1415
SmiMI	CAYNNNNRTG	2 cut(s)	789, 1095
SmlI	CTYRAG	1 cut(s)	917
SmoI	CTYRAG	1 cut(s)	917
SnaBI	TACGTA	1 cut(s)	8
Sse9I	AATT	9 cut(s)	186, 824, 850, 875, 910, 930, 1026, 1388, 1620
SsiI	CCGC	1 cut(s)	538
SspI	AATATT	1 cut(s)	1141
SspMI	CTAG	1 cut(s)	939
SstI	GAGCTC	1 cut(s)	1104
StyD4I	CCNGG	5 cut(s)	60, 177, 273, 499, 1486
StyI	CCWWGG	5 cut(s)	78, 414, 1010, 1225, 1574
TaaI	ACNGT	5 cut(s)	205, 369, 905, 1665, 1701
TaiI	ACGT	6 cut(s)	10, 791, 1195, 1222, 1369, 1501
TaqI	TCGA	1 cut(s)	755
TasI	AATT	9 cut(s)	186, 824, 850, 875, 910, 930, 1026, 1388, 1620
TatI	WGTACW	1 cut(s)	759
TfiI	GAWTC	3 cut(s)	52, 161, 260
Tru1I	TTAA	6 cut(s)	450, 879, 918, 1002, 1137, 1302
Tru9I	TTAA	6 cut(s)	450, 879, 918, 1002, 1137, 1302
TscAI	CASTG	2 cut(s)	1249, 1315
TseFI	GTSAC	4 cut(s)	934, 961, 1582, 1648
TseI	GCWGC	7 cut(s)	236, 341, 599, 1184, 1187, 1297, 1361
Tsp45I	GTSAC	4 cut(s)	934, 961, 1582, 1648
TspGWI	ACGGA	2 cut(s)	233, 338
TspRI	CASTG	2 cut(s)	1249, 1315
Van91I	CCANNNNNTGG	1 cut(s)	593
Vha464I	CTTAAG	1 cut(s)	917
VpaK11BI	GGWCC	3 cut(s)	362, 418, 1415
VspI	ATTAAT	1 cut(s)	1137
XapI	RAATTY	2 cut(s)	850, 875
XceI	RCATGY	2 cut(s)	766, 1020
XcmI	CCANNNNNNNNNTGG	1 cut(s)	791
XmiI	GTMKAC	2 cut(s)	10, 1108
XspI	CTAG	1 cut(s)	939
Zsp2I	ATGCAT	1 cut(s)	1092

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.