Rw2G011510

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001583
Physical Location & Seq
Forward (+)
11645671 .. 11646780
1110 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G011510.1

Sequence Viewer

Length: 318 bp
ATGAAGTTTGCCTTTCTTGTTTGGCTCCAACTTCCATCTGCTGGTGGGGCGAAGCAGTTGTACATGAACCACCTACGCCCGTTCTTTTTGAGGCATCAAACTAAAGTTGATAGAATTTTGGGCCTTACGTATGGTGAATTGCTCAAACTCATTAGTGCACACCAAGGAGAGATCCACTATGTTAGGGCTATGTTCTTGAAAGTTTTTGGTTCAGATCAGCTGCCGATGGGCAGGGCTAATACAGATCTGCCACAGAACAATGCAATTGAAGGGCCGCCTAGAAGAACCACAGAGTCTGACTCCGGTCTAGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

105

Amino Acids

11.9

Weight (kDa)

9.15

Isoelectric Point (pI)

53.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 41
AciI CCGC 1 cut(s) 275
AclWI GGATC 1 cut(s) 166
AcsI RAATTY 1 cut(s) 114
AfaI GTAC 1 cut(s) 62
AfiI CCNNNNNNNGG 1 cut(s) 41
AgsI TTSAA 2 cut(s) 199, 269
AluBI AGCT 1 cut(s) 220
AluI AGCT 1 cut(s) 220
Alw21I GWGCWC 1 cut(s) 160
Alw44I GTGCAC 1 cut(s) 156
AlwI GGATC 1 cut(s) 166
AlwNI CAGNNNCTG 1 cut(s) 296
AoxI GGCC 2 cut(s) 121, 272
ApaLI GTGCAC 1 cut(s) 156
ApeKI GCWGC 1 cut(s) 220
ApoI RAATTY 1 cut(s) 114
AspS9I GGNCC 2 cut(s) 121, 272
AsuHPI GGTGA 1 cut(s) 146
BaeGI GKGCMC 1 cut(s) 160
BarI GAAGNNNNNNTAC 2 cut(s) 44, 76
Bbv12I GWGCWC 1 cut(s) 160
BbvI GCAGC 1 cut(s) 207
BccI CCATC 2 cut(s) 43, 220
BfaI CTAG 2 cut(s) 279, 308
BglII AGATCT 1 cut(s) 244
BisI GCNGC 2 cut(s) 221, 275
BlsI GCNGC 2 cut(s) 222, 276
BmgT120I GGNCC 2 cut(s) 121, 272
BmiI GGNNCC 1 cut(s) 26
BmsI GCATC 1 cut(s) 103
BoxI GACNNNNGTC 1 cut(s) 303
BplI GAGNNNNNCTC 2 cut(s) 284, 316
BsaAI YACGTR 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 163
BsaWI WCCGGW 1 cut(s) 302
Bsc4I CCNNNNNNNGG 1 cut(s) 41
BseDI CCNNGG 1 cut(s) 163
BseLI CCNNNNNNNGG 1 cut(s) 41
BseSI GKGCMC 1 cut(s) 160
BseXI GCAGC 1 cut(s) 207
BshFI GGCC 2 cut(s) 123, 274
BsiHKAI GWGCWC 1 cut(s) 160
BsiSI CCGG 1 cut(s) 303
BslI CCNNNNNNNGG 1 cut(s) 41
BsnI GGCC 2 cut(s) 123, 274
Bsp1286I GDGCHC 1 cut(s) 160
Bsp1407I TGTACA 1 cut(s) 60
Bsp143I GATC 3 cut(s) 171, 214, 244
BspACI CCGC 1 cut(s) 275
BspANI GGCC 2 cut(s) 123, 274
BspLI GGNNCC 1 cut(s) 26
BspPI GGATC 1 cut(s) 166
BsrGI TGTACA 1 cut(s) 60
BssECI CCNNGG 1 cut(s) 163
BssMI GATC 3 cut(s) 171, 214, 244
BssT1I CCWWGG 1 cut(s) 163
BstAUI TGTACA 1 cut(s) 60
BstBAI YACGTR 1 cut(s) 129
BstKTI GATC 3 cut(s) 174, 217, 247
BstMBI GATC 3 cut(s) 171, 214, 244
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstPAI GACNNNNGTC 1 cut(s) 303
BstSLI GKGCMC 1 cut(s) 160
BstSNI TACGTA 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 207
BstX2I RGATCY 2 cut(s) 171, 244
BstYI RGATCY 2 cut(s) 171, 244
BsuRI GGCC 2 cut(s) 123, 274
CaiI CAGNNNCTG 1 cut(s) 296
Cfr13I GGNCC 2 cut(s) 121, 272
Csp6I GTAC 1 cut(s) 61
CviAII CATG 1 cut(s) 64
CviJI RGCY 6 cut(s) 25, 123, 188, 220, 236, 274
CviKI_1 RGCY 6 cut(s) 25, 123, 188, 220, 236, 274
CviQI GTAC 1 cut(s) 61
DpnI GATC 3 cut(s) 173, 216, 246
DpnII GATC 3 cut(s) 171, 214, 244
Eco105I TACGTA 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 163
FaeI CATG 1 cut(s) 67
FaiI YATR 4 cut(s) 65, 132, 180, 191
FalI AAGNNNNNCTT 1 cut(s) 28
FatI CATG 1 cut(s) 63
Fnu4HI GCNGC 2 cut(s) 221, 275
Fsp4HI GCNGC 2 cut(s) 221, 275
FspBI CTAG 2 cut(s) 279, 308
GluI GCNGC 2 cut(s) 221, 275
HaeIII GGCC 2 cut(s) 123, 274
HapII CCGG 1 cut(s) 303
Hin1II CATG 1 cut(s) 67
HinfI GANTC 2 cut(s) 293, 299
HpaII CCGG 1 cut(s) 303
HphI GGTGA 1 cut(s) 146
Hpy166II GTNNAC 1 cut(s) 158
Hpy188I TCNGA 2 cut(s) 214, 298
Hpy188III TCNNGA 2 cut(s) 196, 308
Hpy8I GTNNAC 1 cut(s) 158
HpyAV CCTTC 1 cut(s) 263
HpyCH4IV ACGT 1 cut(s) 128
HpyCH4V TGCA 2 cut(s) 158, 263
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpySE526I ACGT 1 cut(s) 128
Hsp92II CATG 1 cut(s) 67
Kzo9I GATC 3 cut(s) 171, 214, 244
LmnI GCTCC 1 cut(s) 30
LpnPI CCDG 2 cut(s) 27, 217
Lsp1109I GCAGC 1 cut(s) 207
LweI GCATC 1 cut(s) 103
MaeI CTAG 2 cut(s) 279, 308
MaeII ACGT 1 cut(s) 128
MalI GATC 3 cut(s) 173, 216, 246
MboI GATC 3 cut(s) 171, 214, 244
MboII GAAGA 1 cut(s) 294
MfeI CAATTG 1 cut(s) 264
MflI RGATCY 2 cut(s) 171, 244
MhlI GDGCHC 1 cut(s) 160
MluCI AATT 3 cut(s) 114, 137, 264
MlyI GAGTC 2 cut(s) 293, 302
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 1 cut(s) 84
MspA1I CMGCKG 1 cut(s) 220
MspI CCGG 1 cut(s) 303
MunI CAATTG 1 cut(s) 264
MwoI GCNNNNNNNGC 1 cut(s) 47
NdeII GATC 3 cut(s) 171, 214, 244
NlaIII CATG 1 cut(s) 67
NlaIV GGNNCC 1 cut(s) 26
PflMI CCANNNNNTGG 1 cut(s) 41
PkrI GCNGC 2 cut(s) 222, 276
PleI GAGTC 2 cut(s) 293, 301
PpsI GAGTC 2 cut(s) 293, 301
Ppu21I YACGTR 1 cut(s) 129
PshAI GACNNNNGTC 1 cut(s) 303
PspN4I GGNNCC 1 cut(s) 26
PspPI GGNCC 2 cut(s) 121, 272
PstNI CAGNNNCTG 1 cut(s) 296
PsuI RGATCY 2 cut(s) 171, 244
PvuII CAGCTG 1 cut(s) 220
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
SatI GCNGC 2 cut(s) 221, 275
Sau3AI GATC 3 cut(s) 171, 214, 244
Sau96I GGNCC 2 cut(s) 121, 272
SchI GAGTC 2 cut(s) 293, 302
SduI GDGCHC 1 cut(s) 160
SetI ASST 3 cut(s) 75, 131, 222
SfaNI GCATC 1 cut(s) 103
SgeI CNNG 8 cut(s) 29, 54, 76, 91, 176, 208, 244, 291
SnaBI TACGTA 1 cut(s) 129
Sse9I AATT 3 cut(s) 114, 137, 264
SsiI CCGC 1 cut(s) 275
SspMI CTAG 2 cut(s) 279, 308
StyI CCWWGG 1 cut(s) 163
TaiI ACGT 1 cut(s) 131
TasI AATT 3 cut(s) 114, 137, 264
TatI WGTACW 1 cut(s) 60
TauI GCSGC 1 cut(s) 277
TseI GCWGC 1 cut(s) 220
TspDTI ATGAA 2 cut(s) 17, 80
Van91I CCANNNNNTGG 1 cut(s) 41
VneI GTGCAC 1 cut(s) 156
XapI RAATTY 1 cut(s) 114
XbaI TCTAGA 1 cut(s) 307
XspI CTAG 2 cut(s) 279, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.