Rmu_co8296953.1_g000001

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8296953.1
OG0001583
Physical Location & Seq
Forward (+)
227 .. 885
659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8296953.1_g000001.1.cds

Sequence Viewer

Length: 198 bp
atggcgcttctcggatccaacatagccagtgaggtcgggcttcggctgctcctttgtcctcttggttctaacattgtgattcgaacagcgtgttgttctgtgggcattgttgtgccggtatactgtacatgcaaggcaattgagaggaaagatgaaactgcacaacagaagtggcttctttattgggcgggttgggat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

66

Amino Acids

7.24

Weight (kDa)

7.59

Isoelectric Point (pI)

53.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 120
AciI CCGC 1 cut(s) 188
AclWI GGATC 2 cut(s) 9, 22
AfaI GTAC 1 cut(s) 127
AlwI GGATC 2 cut(s) 9, 22
ApeKI GCWGC 1 cut(s) 46
AspLEI GCGC 1 cut(s) 7
AsuII TTCGAA 1 cut(s) 82
BamHI GGATCC 1 cut(s) 14
BbvI GCAGC 1 cut(s) 33
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 1 cut(s) 47
BlsI GCNGC 1 cut(s) 48
BmiI GGNNCC 1 cut(s) 16
Bpu14I TTCGAA 1 cut(s) 82
Bse118I RCCGGY 1 cut(s) 115
Bse1I ACTGG 1 cut(s) 27
BseNI ACTGG 1 cut(s) 27
BseXI GCAGC 1 cut(s) 33
BsgI GTGCAG 1 cut(s) 144
BsiSI CCGG 1 cut(s) 116
Bsp119I TTCGAA 1 cut(s) 82
Bsp1407I TGTACA 1 cut(s) 125
Bsp143I GATC 1 cut(s) 14
BspACI CCGC 1 cut(s) 188
BspLI GGNNCC 1 cut(s) 16
BspPI GGATC 2 cut(s) 9, 22
BspT104I TTCGAA 1 cut(s) 82
BsrFI RCCGGY 1 cut(s) 115
BsrGI TGTACA 1 cut(s) 125
BsrI ACTGG 1 cut(s) 27
BssAI RCCGGY 1 cut(s) 115
BssMI GATC 1 cut(s) 14
BssNAI GTATAC 1 cut(s) 121
Bst1107I GTATAC 1 cut(s) 121
Bst4CI ACNGT 1 cut(s) 125
BstAUI TGTACA 1 cut(s) 125
BstBI TTCGAA 1 cut(s) 82
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 1 cut(s) 17
BstMBI GATC 1 cut(s) 14
BstMWI GCNNNNNNNGC 1 cut(s) 46
BstNSI RCATGY 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 33
BstX2I RGATCY 1 cut(s) 14
BstYI RGATCY 1 cut(s) 14
BstZ17I GTATAC 1 cut(s) 121
BtsIMutI CAGTG 1 cut(s) 34
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 115
Csp6I GTAC 1 cut(s) 126
CspCI CAANNNNNGTGG 2 cut(s) 152, 187
CviAII CATG 1 cut(s) 129
CviJI RGCY 4 cut(s) 26, 40, 46, 175
CviKI_1 RGCY 4 cut(s) 26, 40, 46, 175
CviQI GTAC 1 cut(s) 126
DpnI GATC 1 cut(s) 16
DpnII GATC 1 cut(s) 14
FaeI CATG 1 cut(s) 132
FaiI YATR 3 cut(s) 23, 121, 130
FatI CATG 1 cut(s) 128
FauI CCCGC 1 cut(s) 181
FblI GTMKAC 1 cut(s) 120
Fnu4HI GCNGC 1 cut(s) 47
Fsp4HI GCNGC 1 cut(s) 47
GlaI GCGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 47
HaeII RGCGCY 1 cut(s) 8
HapII CCGG 1 cut(s) 116
HhaI GCGC 1 cut(s) 7
Hin1II CATG 1 cut(s) 132
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 1 cut(s) 79
HpaII CCGG 1 cut(s) 116
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 1 cut(s) 14
Hpy8I GTNNAC 1 cut(s) 121
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4V TGCA 2 cut(s) 132, 161
HpyF10VI GCNNNNNNNGC 1 cut(s) 46
Hsp92II CATG 1 cut(s) 132
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 1 cut(s) 14
LmnI GCTCC 1 cut(s) 54
LpnPI CCDG 2 cut(s) 40, 129
Lsp1109I GCAGC 1 cut(s) 33
MalI GATC 1 cut(s) 16
MboI GATC 1 cut(s) 14
MfeI CAATTG 1 cut(s) 138
MflI RGATCY 1 cut(s) 14
MluCI AATT 1 cut(s) 138
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 3 cut(s) 25, 69, 138
MslI CAYNNNNRTG 1 cut(s) 110
MspI CCGG 1 cut(s) 116
MunI CAATTG 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 46
NdeII GATC 1 cut(s) 14
NlaIII CATG 1 cut(s) 132
NlaIV GGNNCC 1 cut(s) 16
NspI RCATGY 1 cut(s) 132
NspV TTCGAA 1 cut(s) 82
PfeI GAWTC 1 cut(s) 79
PkrI GCNGC 1 cut(s) 48
PspN4I GGNNCC 1 cut(s) 16
PsuI RGATCY 1 cut(s) 14
RsaI GTAC 1 cut(s) 127
RsaNI GTAC 1 cut(s) 126
RseI CAYNNNNRTG 1 cut(s) 110
SatI GCNGC 1 cut(s) 47
Sau3AI GATC 1 cut(s) 14
SetI ASST 1 cut(s) 36
SfuI TTCGAA 1 cut(s) 82
SgeI CNNG 8 cut(s) 23, 39, 49, 74, 102, 128, 141, 145
SmiMI CAYNNNNRTG 1 cut(s) 110
Sse9I AATT 1 cut(s) 138
SsiI CCGC 1 cut(s) 188
TaaI ACNGT 1 cut(s) 125
TaqI TCGA 1 cut(s) 82
TasI AATT 1 cut(s) 138
TatI WGTACW 1 cut(s) 125
TfiI GAWTC 1 cut(s) 79
TscAI CASTG 1 cut(s) 34
TseI GCWGC 1 cut(s) 46
TspDTI ATGAA 1 cut(s) 168
TspRI CASTG 1 cut(s) 34
XceI RCATGY 1 cut(s) 132
XmiI GTMKAC 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.