MD10G1080600.v1.1

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0001583
Physical Location & Seq
Forward (+)
11889564 .. 11892717
3154 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1080600.v1.1.491

Sequence Viewer

Length: 555 bp
ATGGCTCTACCAAGCGAGGTCGGATTGCGGGTACTGCTTTACCCCTTTGGTTCCAACGTCCTTGTCCGGACCGCTTGCTGCTCTGTGGGGATTGCTTTACCTGTTTACTCGACGTTTAAAGCTATTGAGAAGAAGGATCAAGAGGAGCAACAAAGAATGCTTCTTTATTGGGCAGCTTATGGATCTTTCAGTGTTGCAGAAGTATTTTCAGACAAAATTCTCTCCTGGTTTCCGCTCTACTACCATATGAAGTTTGCATTTCTTGTTTGGTTACAACTTCCAGCCTCAAATGGAGCAAGGCATTTGTATATGAACCATCTGCGTCCATTCTTTCAGAGACATCAAGTCCGACTTGATCAAGCTGTGGATTTTATTTATGGCCAAATGACTAAATTCATCAGCTCACACCAAGGAGAATTACAGTTTGCAAAGGCACTTTTCATGAAGATTGTGGCTTCAGTTAGGGGCATCGTCCCAGGGCAAAGGCAATCAAATCGTGCGATCGAAGGCCCTGCGAAAGAGAGTCAAGACACTGAATCAGATATAGATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

185

Amino Acids

21.05

Weight (kDa)

8.52

Isoelectric Point (pI)

47.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 34 - 110 1.5e-28 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 235
AccIII TCCGGA 1 cut(s) 66
AciI CCGC 3 cut(s) 28, 72, 233
AclWI GGATC 2 cut(s) 144, 190
AcoI YGGCCR 1 cut(s) 379
AcsI RAATTY 2 cut(s) 216, 392
AcuI CTGAAG 1 cut(s) 441
AfaI GTAC 1 cut(s) 33
AhdI GACNNNNNGTC 1 cut(s) 344
AjnI CCWGG 2 cut(s) 224, 475
AluBI AGCT 4 cut(s) 122, 176, 362, 402
AluI AGCT 4 cut(s) 122, 176, 362, 402
Alw26I GTCTC 1 cut(s) 331
AlwI GGATC 2 cut(s) 144, 190
Aor13HI TCCGGA 1 cut(s) 66
AoxI GGCC 2 cut(s) 379, 508
ApeKI GCWGC 2 cut(s) 78, 173
ApoI RAATTY 2 cut(s) 216, 392
AspS9I GGNCC 2 cut(s) 69, 509
AvaII GGWCC 1 cut(s) 69
BalI TGGCCA 1 cut(s) 381
BbvI GCAGC 2 cut(s) 65, 185
BccI CCATC 1 cut(s) 324
BcgI CGANNNNNNTGC 4 cut(s) 476, 494, 510, 528
BciT130I CCWGG 2 cut(s) 226, 477
BclI TGATCA 1 cut(s) 355
BcoDI GTCTC 1 cut(s) 331
BisI GCNGC 2 cut(s) 79, 174
BlsI GCNGC 2 cut(s) 80, 175
Bme1390I CCNGG 2 cut(s) 226, 477
Bme18I GGWCC 1 cut(s) 69
BmeRI GACNNNNNGTC 1 cut(s) 344
BmgT120I GGNCC 2 cut(s) 69, 509
BmiI GGNNCC 1 cut(s) 52
BmrFI CCNGG 2 cut(s) 226, 477
BmsI GCATC 1 cut(s) 477
BsaJI CCNNGG 3 cut(s) 409, 475, 476
BsaWI WCCGGW 1 cut(s) 66
BseAI TCCGGA 1 cut(s) 66
BseBI CCWGG 2 cut(s) 226, 477
BseDI CCNNGG 3 cut(s) 409, 475, 476
BseRI GAGGAG 1 cut(s) 158
BseXI GCAGC 2 cut(s) 65, 185
Bsh1285I CGRYCG 1 cut(s) 504
BshFI GGCC 2 cut(s) 381, 510
BsiEI CGRYCG 1 cut(s) 504
BsiSI CCGG 1 cut(s) 67
BslFI GGGAC 1 cut(s) 458
BsmAI GTCTC 1 cut(s) 331
BsmFI GGGAC 1 cut(s) 458
BsmI GAATGC 1 cut(s) 162
BsnI GGCC 2 cut(s) 381, 510
Bsp13I TCCGGA 1 cut(s) 66
Bsp143I GATC 4 cut(s) 136, 182, 355, 501
BspACI CCGC 3 cut(s) 28, 72, 233
BspANI GGCC 2 cut(s) 381, 510
BspEI TCCGGA 1 cut(s) 66
BspHI TCATGA 1 cut(s) 441
BspLI GGNNCC 1 cut(s) 52
BspPI GGATC 2 cut(s) 144, 190
BsrBI CCGCTC 1 cut(s) 235
BssECI CCNNGG 3 cut(s) 409, 475, 476
BssMI GATC 4 cut(s) 136, 182, 355, 501
BssT1I CCWWGG 1 cut(s) 409
Bst2UI CCWGG 2 cut(s) 226, 477
Bst4CI ACNGT 1 cut(s) 423
BstC8I GCNNGC 1 cut(s) 76
BstKTI GATC 4 cut(s) 139, 185, 358, 504
BstMAI GTCTC 1 cut(s) 331
BstMBI GATC 4 cut(s) 136, 182, 355, 501
BstMCI CGRYCG 1 cut(s) 504
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstNI CCWGG 2 cut(s) 226, 477
BstSCI CCNGG 2 cut(s) 224, 475
BstV1I GCAGC 2 cut(s) 65, 185
BstX2I RGATCY 1 cut(s) 182
BstYI RGATCY 1 cut(s) 182
BsuRI GGCC 2 cut(s) 381, 510
BtsIMutI CAGTG 2 cut(s) 196, 531
Cac8I GCNNGC 1 cut(s) 76
CciI TCATGA 1 cut(s) 441
Cfr13I GGNCC 2 cut(s) 69, 509
CpoI CGGWCCG 1 cut(s) 69
CseI GACGC 1 cut(s) 311
Csp6I GTAC 1 cut(s) 32
CspI CGGWCCG 1 cut(s) 69
CviAII CATG 1 cut(s) 442
CviJI RGCY 9 cut(s) 5, 122, 176, 284, 362, 381, 402, 455, 510
CviKI_1 RGCY 9 cut(s) 5, 122, 176, 284, 362, 381, 402, 455, 510
CviQI GTAC 1 cut(s) 32
DpnI GATC 4 cut(s) 138, 184, 357, 503
DpnII GATC 4 cut(s) 136, 182, 355, 501
DraI TTTAAA 1 cut(s) 118
DriI GACNNNNNGTC 1 cut(s) 344
EaeI YGGCCR 1 cut(s) 379
Eam1105I GACNNNNNGTC 1 cut(s) 344
Eco130I CCWWGG 1 cut(s) 409
Eco47I GGWCC 1 cut(s) 69
Eco57I CTGAAG 1 cut(s) 441
EcoO109I RGGNCCY 1 cut(s) 509
EcoRII CCWGG 2 cut(s) 224, 475
EcoT14I CCWWGG 1 cut(s) 409
ErhI CCWWGG 1 cut(s) 409
FaeI CATG 1 cut(s) 445
FaiI YATR 8 cut(s) 180, 246, 248, 309, 311, 378, 443, 545
FalI AAGNNNNNCTT 2 cut(s) 336, 368
FaqI GGGAC 1 cut(s) 458
FatI CATG 1 cut(s) 441
FauI CCCGC 1 cut(s) 21
FauNDI CATATG 1 cut(s) 246
FbaI TGATCA 1 cut(s) 355
Fnu4HI GCNGC 2 cut(s) 79, 174
Fsp4HI GCNGC 2 cut(s) 79, 174
GluI GCNGC 2 cut(s) 79, 174
HaeIII GGCC 2 cut(s) 381, 510
HapII CCGG 1 cut(s) 67
HgaI GACGC 1 cut(s) 311
Hin1II CATG 1 cut(s) 445
HinfI GANTC 2 cut(s) 523, 536
HpaII CCGG 1 cut(s) 67
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 5 cut(s) 23, 211, 336, 350, 541
Hpy188III TCNNGA 4 cut(s) 67, 140, 442, 527
Hpy8I GTNNAC 1 cut(s) 106
Hpy99I CGWCG 1 cut(s) 115
HpyAV CCTTC 2 cut(s) 127, 500
HpyCH4III ACNGT 1 cut(s) 423
HpyCH4IV ACGT 2 cut(s) 57, 113
HpyCH4V TGCA 3 cut(s) 197, 257, 428
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
HpySE526I ACGT 2 cut(s) 57, 113
Hsp92II CATG 1 cut(s) 445
Kpn2I TCCGGA 1 cut(s) 66
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 4 cut(s) 136, 182, 355, 501
LmnI GCTCC 2 cut(s) 145, 293
LpnPI CCDG 8 cut(s) 80, 114, 211, 238, 294, 462, 489, 525
Lsp1109I GCAGC 2 cut(s) 65, 185
LweI GCATC 1 cut(s) 477
MaeII ACGT 2 cut(s) 57, 113
MaeIII GTNAC 1 cut(s) 270
MalI GATC 4 cut(s) 138, 184, 357, 503
MbiI CCGCTC 1 cut(s) 235
MboI GATC 4 cut(s) 136, 182, 355, 501
MboII GAAGA 2 cut(s) 142, 457
MflI RGATCY 1 cut(s) 182
MlsI TGGCCA 1 cut(s) 381
MluCI AATT 3 cut(s) 216, 392, 416
MluNI TGGCCA 1 cut(s) 381
MlyI GAGTC 1 cut(s) 532
MmeI TCCRAC 2 cut(s) 78, 373
MnlI CCTC 3 cut(s) 10, 136, 295
Mox20I TGGCCA 1 cut(s) 381
MroI TCCGGA 1 cut(s) 66
MscI TGGCCA 1 cut(s) 381
MseI TTAA 1 cut(s) 117
Msp20I TGGCCA 1 cut(s) 381
MspI CCGG 1 cut(s) 67
MspR9I CCNGG 2 cut(s) 226, 477
Mva1269I GAATGC 1 cut(s) 162
MvaI CCWGG 2 cut(s) 226, 477
MwoI GCNNNNNNNGC 1 cut(s) 34
NdeI CATATG 1 cut(s) 246
NdeII GATC 4 cut(s) 136, 182, 355, 501
NlaIII CATG 1 cut(s) 445
NlaIV GGNNCC 1 cut(s) 52
PagI TCATGA 1 cut(s) 441
PasI CCCWGGG 1 cut(s) 476
PctI GAATGC 1 cut(s) 162
PfeI GAWTC 1 cut(s) 536
PkrI GCNGC 2 cut(s) 80, 175
Ple19I CGATCG 1 cut(s) 504
PleI GAGTC 1 cut(s) 531
PpsI GAGTC 1 cut(s) 531
Psp6I CCWGG 2 cut(s) 224, 475
PspGI CCWGG 2 cut(s) 224, 475
PspN4I GGNNCC 1 cut(s) 52
PspPI GGNCC 2 cut(s) 69, 509
PsuI RGATCY 1 cut(s) 182
PvuI CGATCG 1 cut(s) 504
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
Rsr2I CGGWCCG 1 cut(s) 69
RsrII CGGWCCG 1 cut(s) 69
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 2 cut(s) 79, 174
Sau3AI GATC 4 cut(s) 136, 182, 355, 501
Sau96I GGNCC 2 cut(s) 69, 509
SchI GAGTC 1 cut(s) 532
ScrFI CCNGG 2 cut(s) 226, 477
SetI ASST 8 cut(s) 21, 60, 103, 116, 124, 178, 364, 404
SfaNI GCATC 1 cut(s) 477
SinI GGWCC 1 cut(s) 69
Sse9I AATT 3 cut(s) 216, 392, 416
SsiI CCGC 3 cut(s) 28, 72, 233
StyD4I CCNGG 2 cut(s) 224, 475
StyI CCWWGG 1 cut(s) 409
TaaI ACNGT 1 cut(s) 423
TaiI ACGT 2 cut(s) 60, 116
TaqI TCGA 2 cut(s) 110, 504
TasI AATT 3 cut(s) 216, 392, 416
TfiI GAWTC 1 cut(s) 536
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TscAI CASTG 2 cut(s) 196, 538
TseI GCWGC 2 cut(s) 78, 173
TspDTI ATGAA 5 cut(s) 263, 326, 385, 430, 458
TspRI CASTG 2 cut(s) 196, 538
VpaK11BI GGWCC 1 cut(s) 69
XapI RAATTY 2 cut(s) 216, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.