pycom02g11960

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0001583
Physical Location & Seq
Forward (+)
8543977 .. 8547214
3238 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g11960.8

Sequence Viewer

Length: 618 bp
ATGGCTCTTCTCGGATCCAACATCACCAGCGAGGTAGGGTTGAGGTTGCTACTTTGCCCTCTTGGTTCGAACATTGTACTCCGAACTGCATGTTGTTCTGTGGGGATTGGTATACCAGTATACTGTACATGCAAGGCAATTGAAAGGAAAGATCGTATTGCACAAGAAAAGTGGCTTTTGTATTGGGCAGCTTATGGATCTTTCAGCCTTGTTGAAATATTTTCAGACAAGCTTATTTCATGGTGCCCAATGTACTACCATATGAAGTTTGCATTTCTTGTTTGGCTCCAACTTCCTACTGTTGATGGAGCAAAGCAGTTGTACACAAGCCATCTACGCCCGTTCTTTTTGAAGCATCAAGCTAGAATTGATCAAGTTTTGGGGCTCACATATGGCGAAGTGCATAAACTCCTTAGTGCACACCAAGCCGAGATCGAGTATGCTAGGGTTATGATCATGAAGATTTTGGGTTCAGACCAGCCACCTAATTCAGATGTACCCCGGCAGAATGCGATTGAAGGCCAGATCAGACCGCCTAATCCAGACCTACCAGGGCAGAATGCGATTGAAGGCCAGACTAGACCAGCACCAGTTTCGGAGTCTGATCACGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

206

Amino Acids

23.0

Weight (kDa)

6.58

Isoelectric Point (pI)

50.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 243
AccI GTMKAC 2 cut(s) 112, 120
AciI CCGC 1 cut(s) 533
AclWI GGATC 3 cut(s) 9, 22, 205
AfaI GTAC 5 cut(s) 78, 127, 254, 323, 498
AgsI TTSAA 5 cut(s) 143, 215, 352, 518, 569
AjnI CCWGG 1 cut(s) 550
AluBI AGCT 3 cut(s) 191, 232, 362
AluI AGCT 3 cut(s) 191, 232, 362
Alw21I GWGCWC 1 cut(s) 421
Alw44I GTGCAC 1 cut(s) 417
AlwI GGATC 3 cut(s) 9, 22, 205
AoxI GGCC 2 cut(s) 520, 571
ApaLI GTGCAC 1 cut(s) 417
ApeKI GCWGC 1 cut(s) 188
AsuC2I CCSGG 1 cut(s) 502
AsuHPI GGTGA 1 cut(s) 16
AsuII TTCGAA 1 cut(s) 68
BaeGI GKGCMC 2 cut(s) 248, 421
BamHI GGATCC 1 cut(s) 14
BanI GGYRCC 1 cut(s) 243
BanII GRGCYC 1 cut(s) 387
Bbv12I GWGCWC 1 cut(s) 421
BbvI GCAGC 1 cut(s) 200
BccI CCATC 2 cut(s) 299, 339
BcgI CGANNNNNNTGC 2 cut(s) 576, 610
BciT130I CCWGG 1 cut(s) 552
BclI TGATCA 3 cut(s) 370, 453, 604
BcnI CCSGG 1 cut(s) 502
BfaI CTAG 3 cut(s) 363, 444, 579
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
Bme1390I CCNGG 2 cut(s) 502, 552
BmiI GGNNCC 3 cut(s) 16, 245, 287
BmrFI CCNGG 2 cut(s) 502, 552
BmsI GCATC 1 cut(s) 364
Bpu14I TTCGAA 1 cut(s) 68
BpuMI CCSGG 1 cut(s) 502
BsaJI CCNNGG 2 cut(s) 500, 551
Bse1I ACTGG 2 cut(s) 116, 590
BseBI CCWGG 1 cut(s) 552
BseDI CCNNGG 2 cut(s) 500, 551
BseNI ACTGG 2 cut(s) 116, 590
BseSI GKGCMC 2 cut(s) 248, 421
BseXI GCAGC 1 cut(s) 200
BshFI GGCC 2 cut(s) 522, 573
BshNI GGYRCC 1 cut(s) 243
BsiHKAI GWGCWC 1 cut(s) 421
BsiSI CCGG 1 cut(s) 502
BsmI GAATGC 2 cut(s) 514, 565
BsnI GGCC 2 cut(s) 522, 573
Bsp119I TTCGAA 1 cut(s) 68
Bsp1286I GDGCHC 3 cut(s) 248, 387, 421
Bsp1407I TGTACA 2 cut(s) 125, 321
Bsp143I GATC 8 cut(s) 14, 151, 197, 370, 432, 453, 525, 604
BspACI CCGC 1 cut(s) 533
BspANI GGCC 2 cut(s) 522, 573
BspHI TCATGA 1 cut(s) 456
BspLI GGNNCC 3 cut(s) 16, 245, 287
BspPI GGATC 3 cut(s) 9, 22, 205
BspQI GCTCTTC 1 cut(s) 12
BspT104I TTCGAA 1 cut(s) 68
BspT107I GGYRCC 1 cut(s) 243
BsrGI TGTACA 2 cut(s) 125, 321
BsrI ACTGG 2 cut(s) 116, 590
BssECI CCNNGG 2 cut(s) 500, 551
BssMI GATC 8 cut(s) 14, 151, 197, 370, 432, 453, 525, 604
BssNAI GTATAC 2 cut(s) 113, 121
Bst1107I GTATAC 2 cut(s) 113, 121
Bst2UI CCWGG 1 cut(s) 552
Bst4CI ACNGT 2 cut(s) 125, 301
Bst6I CTCTTC 1 cut(s) 12
BstAUI TGTACA 2 cut(s) 125, 321
BstBI TTCGAA 1 cut(s) 68
BstDEI CTNAG 1 cut(s) 413
BstKTI GATC 8 cut(s) 17, 154, 200, 373, 435, 456, 528, 607
BstMBI GATC 8 cut(s) 14, 151, 197, 370, 432, 453, 525, 604
BstMWI GCNNNNNNNGC 2 cut(s) 336, 425
BstNI CCWGG 1 cut(s) 552
BstNSI RCATGY 2 cut(s) 93, 132
BstSCI CCNGG 2 cut(s) 500, 550
BstSLI GKGCMC 2 cut(s) 248, 421
BstV1I GCAGC 1 cut(s) 200
BstX2I RGATCY 2 cut(s) 14, 197
BstYI RGATCY 2 cut(s) 14, 197
BstZ17I GTATAC 2 cut(s) 113, 121
BsuRI GGCC 2 cut(s) 522, 573
CciI TCATGA 1 cut(s) 456
Csp6I GTAC 5 cut(s) 77, 126, 253, 322, 497
CspCI CAANNNNNGTGG 2 cut(s) 152, 187
CviAII CATG 4 cut(s) 90, 129, 240, 457
CviQI GTAC 5 cut(s) 77, 126, 253, 322, 497
DdeI CTNAG 1 cut(s) 413
DpnI GATC 8 cut(s) 16, 153, 199, 372, 434, 455, 527, 606
DpnII GATC 8 cut(s) 14, 151, 197, 370, 432, 453, 525, 604
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
Eco24I GRGCYC 1 cut(s) 387
EcoRII CCWGG 1 cut(s) 550
EcoT38I GRGCYC 1 cut(s) 387
FaeI CATG 4 cut(s) 93, 132, 243, 460
FatI CATG 4 cut(s) 89, 128, 239, 456
FauNDI CATATG 2 cut(s) 261, 391
FbaI TGATCA 3 cut(s) 370, 453, 604
FblI GTMKAC 2 cut(s) 112, 120
Fnu4HI GCNGC 1 cut(s) 189
FriOI GRGCYC 1 cut(s) 387
Fsp4HI GCNGC 1 cut(s) 189
FspBI CTAG 3 cut(s) 363, 444, 579
GluI GCNGC 1 cut(s) 189
HaeIII GGCC 2 cut(s) 522, 573
HapII CCGG 1 cut(s) 502
Hin1II CATG 4 cut(s) 93, 132, 243, 460
HindIII AAGCTT 1 cut(s) 230
HinfI GANTC 1 cut(s) 599
HpaII CCGG 1 cut(s) 502
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 4 cut(s) 113, 121, 324, 419
Hpy188I TCNGA 8 cut(s) 14, 83, 226, 475, 493, 530, 598, 604
Hpy188III TCNNGA 3 cut(s) 457, 542, 608
Hpy8I GTNNAC 4 cut(s) 113, 121, 324, 419
HpyAV CCTTC 2 cut(s) 512, 563
HpyCH4III ACNGT 2 cut(s) 125, 301
HpyCH4V TGCA 6 cut(s) 89, 132, 161, 272, 403, 419
HpyF10VI GCNNNNNNNGC 2 cut(s) 336, 425
HpyF3I CTNAG 1 cut(s) 413
Hsp92II CATG 4 cut(s) 93, 132, 243, 460
Ksp22I TGATCA 3 cut(s) 370, 453, 604
Kzo9I GATC 8 cut(s) 14, 151, 197, 370, 432, 453, 525, 604
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 2 cut(s) 291, 308
Lsp1109I GCAGC 1 cut(s) 200
LweI GCATC 1 cut(s) 364
MaeI CTAG 3 cut(s) 363, 444, 579
MalI GATC 8 cut(s) 16, 153, 199, 372, 434, 455, 527, 606
MboI GATC 8 cut(s) 14, 151, 197, 370, 432, 453, 525, 604
MboII GAAGA 1 cut(s) 472
MfeI CAATTG 1 cut(s) 138
MflI RGATCY 2 cut(s) 14, 197
MhlI GDGCHC 3 cut(s) 248, 387, 421
MluCI AATT 3 cut(s) 138, 366, 487
MlyI GAGTC 1 cut(s) 608
MmeI TCCRAC 2 cut(s) 42, 313
MnlI CCTC 3 cut(s) 25, 36, 69
MspI CCGG 1 cut(s) 502
MspR9I CCNGG 2 cut(s) 502, 552
MunI CAATTG 1 cut(s) 138
Mva1269I GAATGC 2 cut(s) 514, 565
MvaI CCWGG 1 cut(s) 552
MwoI GCNNNNNNNGC 2 cut(s) 336, 425
NciI CCSGG 1 cut(s) 502
NdeI CATATG 2 cut(s) 261, 391
NdeII GATC 8 cut(s) 14, 151, 197, 370, 432, 453, 525, 604
NlaIII CATG 4 cut(s) 93, 132, 243, 460
NlaIV GGNNCC 3 cut(s) 16, 245, 287
NmeAIII GCCGAG 1 cut(s) 454
NspI RCATGY 2 cut(s) 93, 132
NspV TTCGAA 1 cut(s) 68
PagI TCATGA 1 cut(s) 456
PciSI GCTCTTC 1 cut(s) 12
PctI GAATGC 2 cut(s) 514, 565
PkrI GCNGC 1 cut(s) 190
PleI GAGTC 1 cut(s) 607
PpsI GAGTC 1 cut(s) 607
Psp6I CCWGG 1 cut(s) 550
PspGI CCWGG 1 cut(s) 550
PspN4I GGNNCC 3 cut(s) 16, 245, 287
PsuI RGATCY 2 cut(s) 14, 197
RsaI GTAC 5 cut(s) 78, 127, 254, 323, 498
RsaNI GTAC 5 cut(s) 77, 126, 253, 322, 497
SapI GCTCTTC 1 cut(s) 12
SatI GCNGC 1 cut(s) 189
Sau3AI GATC 8 cut(s) 14, 151, 197, 370, 432, 453, 525, 604
SchI GAGTC 1 cut(s) 608
ScrFI CCNGG 2 cut(s) 502, 552
SduI GDGCHC 3 cut(s) 248, 387, 421
SetI ASST 7 cut(s) 36, 47, 193, 234, 364, 487, 549
SfaNI GCATC 1 cut(s) 364
SfuI TTCGAA 1 cut(s) 68
Sse9I AATT 3 cut(s) 138, 366, 487
SsiI CCGC 1 cut(s) 533
SspI AATATT 1 cut(s) 219
SspMI CTAG 3 cut(s) 363, 444, 579
StyD4I CCNGG 2 cut(s) 500, 550
TaaI ACNGT 2 cut(s) 125, 301
TaqI TCGA 2 cut(s) 68, 435
TasI AATT 3 cut(s) 138, 366, 487
TatI WGTACW 4 cut(s) 76, 125, 252, 321
TseI GCWGC 1 cut(s) 188
TspDTI ATGAA 3 cut(s) 228, 278, 473
VneI GTGCAC 1 cut(s) 417
XceI RCATGY 2 cut(s) 93, 132
XmiI GTMKAC 2 cut(s) 112, 120
XspI CTAG 3 cut(s) 363, 444, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.