Rh6CG116400

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001583
Physical Location & Seq
Reverse (-)
13341090 .. 13344669
3580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG116400.1

Sequence Viewer

Length: 435 bp
ATGGCTTTTCCGAGCGAGGTCGGATTGCGTGTGCTGCTCTGCCCTCTTGGTTCCAACGTCATCGTCCGCACTGCTTGCTGCTCTGTGGGGGTCGCTTTGCCTGTTTACTCAACTTTCAAAGCTATTGAGAGCAAAGACCGAGACGAACAGCAGCGGTGGCTTCTTTACTGGGCAGCTTATGGATCTTTCAGTATAGCAGAAGTGTTTTCAGACAAACTTATCTCCTGGGTTCCACTCTACTATCACATGAAGTTTGCATTTCTCGTTTGGTTACAACTTCCAAGTGCAAATGGGGCAAAGCATTTGTATATGAGGCATCTGCGTCCATTCCTGTTGAGGCATCAAGCACGACTTGATCAAGTTGTAGAGTTTTTATATGCTGAAACGGTAAATTTTCATCTTTCATTTTCTTGTGTTTGTTTTACATTTACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

144

Amino Acids

16.64

Weight (kDa)

8.64

Isoelectric Point (pI)

48.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 34 - 110 1e-29 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 67, 154
AclWI GGATC 1 cut(s) 190
AcsI RAATTY 1 cut(s) 391
AgsI TTSAA 1 cut(s) 118
AjnI CCWGG 1 cut(s) 224
AluBI AGCT 2 cut(s) 122, 176
AluI AGCT 2 cut(s) 122, 176
Alw26I GTCTC 1 cut(s) 135
AlwI GGATC 1 cut(s) 190
ApeKI GCWGC 4 cut(s) 34, 78, 151, 173
ApoI RAATTY 1 cut(s) 391
BbvI GCAGC 4 cut(s) 21, 65, 163, 185
BciT130I CCWGG 1 cut(s) 226
BclI TGATCA 1 cut(s) 355
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 1 cut(s) 433
BisI GCNGC 4 cut(s) 35, 79, 152, 174
BlsI GCNGC 4 cut(s) 36, 80, 153, 175
Bme1390I CCNGG 1 cut(s) 226
BmiI GGNNCC 2 cut(s) 52, 231
BmrFI CCNGG 1 cut(s) 226
BmrI ACTGGG 1 cut(s) 178
BmsI GCATC 2 cut(s) 325, 349
BmuI ACTGGG 1 cut(s) 178
BsaJI CCNNGG 1 cut(s) 225
Bse1I ACTGG 1 cut(s) 173
BseBI CCWGG 1 cut(s) 226
BseDI CCNNGG 1 cut(s) 225
BseNI ACTGG 1 cut(s) 173
BseXI GCAGC 4 cut(s) 21, 65, 163, 185
BsmAI GTCTC 1 cut(s) 135
BsmBI CGTCTC 1 cut(s) 135
Bsp143I GATC 2 cut(s) 182, 355
BspACI CCGC 2 cut(s) 67, 154
BspLI GGNNCC 2 cut(s) 52, 231
BspPI GGATC 1 cut(s) 190
BsrI ACTGG 1 cut(s) 173
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 2 cut(s) 182, 355
Bst2UI CCWGG 1 cut(s) 226
Bst4CI ACNGT 1 cut(s) 388
BstAPI GCANNNNNTGC 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 76
BstKTI GATC 2 cut(s) 185, 358
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 2 cut(s) 182, 355
BstMWI GCNNNNNNNGC 4 cut(s) 34, 75, 157, 293
BstNI CCWGG 1 cut(s) 226
BstSCI CCNGG 1 cut(s) 224
BstV1I GCAGC 4 cut(s) 21, 65, 163, 185
BstX2I RGATCY 1 cut(s) 182
BstYI RGATCY 1 cut(s) 182
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 1 cut(s) 69
Cac8I GCNNGC 1 cut(s) 76
CseI GACGC 1 cut(s) 311
CviAII CATG 1 cut(s) 247
CviJI RGCY 4 cut(s) 5, 122, 160, 176
CviKI_1 RGCY 4 cut(s) 5, 122, 160, 176
DpnI GATC 2 cut(s) 184, 357
DpnII GATC 2 cut(s) 182, 355
EcoRII CCWGG 1 cut(s) 224
Esp3I CGTCTC 1 cut(s) 135
FaeI CATG 1 cut(s) 250
FaiI YATR 7 cut(s) 180, 194, 248, 309, 311, 376, 378
FalI AAGNNNNNCTT 2 cut(s) 336, 368
FatI CATG 1 cut(s) 246
FbaI TGATCA 1 cut(s) 355
Fnu4HI GCNGC 4 cut(s) 35, 79, 152, 174
Fsp4HI GCNGC 4 cut(s) 35, 79, 152, 174
FspBI CTAG 1 cut(s) 433
GluI GCNGC 4 cut(s) 35, 79, 152, 174
HgaI GACGC 1 cut(s) 311
Hin1II CATG 1 cut(s) 250
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 3 cut(s) 12, 23, 211
Hpy8I GTNNAC 1 cut(s) 106
HpyCH4III ACNGT 1 cut(s) 388
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 2 cut(s) 257, 287
HpyF10VI GCNNNNNNNGC 4 cut(s) 34, 75, 157, 293
HpySE526I ACGT 1 cut(s) 57
Hsp92II CATG 1 cut(s) 250
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 2 cut(s) 182, 355
LpnPI CCDG 5 cut(s) 114, 154, 211, 238, 344
Lsp1109I GCAGC 4 cut(s) 21, 65, 163, 185
LweI GCATC 2 cut(s) 325, 349
MaeI CTAG 1 cut(s) 433
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 1 cut(s) 270
MalI GATC 2 cut(s) 184, 357
MboI GATC 2 cut(s) 182, 355
MflI RGATCY 1 cut(s) 182
MluCI AATT 1 cut(s) 391
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 4 cut(s) 10, 54, 306, 330
MspA1I CMGCKG 1 cut(s) 154
MspR9I CCNGG 1 cut(s) 226
MvaI CCWGG 1 cut(s) 226
MwoI GCNNNNNNNGC 4 cut(s) 34, 75, 157, 293
NdeII GATC 2 cut(s) 182, 355
NlaIII CATG 1 cut(s) 250
NlaIV GGNNCC 2 cut(s) 52, 231
PkrI GCNGC 4 cut(s) 36, 80, 153, 175
Psp6I CCWGG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 2 cut(s) 52, 231
PsuI RGATCY 1 cut(s) 182
SatI GCNGC 4 cut(s) 35, 79, 152, 174
Sau3AI GATC 2 cut(s) 182, 355
ScrFI CCNGG 1 cut(s) 226
SetI ASST 5 cut(s) 21, 60, 124, 178, 434
SfaNI GCATC 2 cut(s) 325, 349
Sse9I AATT 1 cut(s) 391
SsiI CCGC 2 cut(s) 67, 154
SspMI CTAG 1 cut(s) 433
StyD4I CCNGG 1 cut(s) 224
TaaI ACNGT 1 cut(s) 388
TaiI ACGT 1 cut(s) 60
TaqII GACCGA 1 cut(s) 153
TasI AATT 1 cut(s) 391
TscAI CASTG 1 cut(s) 76
TseI GCWGC 4 cut(s) 34, 78, 151, 173
TspDTI ATGAA 3 cut(s) 263, 386, 393
TspRI CASTG 1 cut(s) 76
XapI RAATTY 1 cut(s) 391
XspI CTAG 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.