Rroxscaffold_2G00140720

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001583
Physical Location & Seq
Reverse (-)
78998279 .. 79001371
3093 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00140720.1

Sequence Viewer

Length: 579 bp
ATGGCGCTTCTCGGATCCAACATAGCCAGTGAGGTCGGGCTTCGGCTGCTGCTCTGTCCTCTTGGTTCTAACATTGTTATTCGAACAGCGTGTTGTTCTGTGGGGATTGTTGTACCAGTCTACTGTACATGCAAGGCAATTGAGAGGAAAGATGAAACTGCACAACAGAAGTGGCTTCTTTATTGGGCAGCTTATGGATCTTTCAGCCTTGTGGAAATATTTTCAGATAGGCTTATATCTTGGTGCCCATATTACTATCACATGAAGTTTGCCTTTCTTGTTTGGCTCCAACTTCCATCTGCTGATGGGGCGAAGCAGTTATACATGAACCACCTACGCCCGTTCTTTTTGAGGCATCAAACTAAAGTTGATAGAATTTTGGGCCTTACATATGGTGAATTGCTCAAACTCATTAGTGCACACCAAGGAGAGATCCACTATGCGAGGGCTATGTTCTTGAAAGTTTTTGGTTCAGATCAGATGCCGAGGGGCAGGGCTAATACAGATCTGCCACAGAACAATGCAATTGAAGGGCCGCCTAGAACAACCAGAGAGTCTGACTCCGGTCTAGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

192

Amino Acids

21.73

Weight (kDa)

8.52

Isoelectric Point (pI)

48.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 39 - 115 8.5e-27 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 243
AccI GTMKAC 1 cut(s) 120
AciI CCGC 1 cut(s) 536
AclWI GGATC 4 cut(s) 9, 22, 205, 427
AcsI RAATTY 1 cut(s) 375
AfaI GTAC 2 cut(s) 114, 127
AgsI TTSAA 2 cut(s) 460, 530
AluBI AGCT 1 cut(s) 191
AluI AGCT 1 cut(s) 191
Alw21I GWGCWC 1 cut(s) 421
Alw44I GTGCAC 1 cut(s) 417
AlwI GGATC 4 cut(s) 9, 22, 205, 427
AoxI GGCC 2 cut(s) 382, 533
ApaLI GTGCAC 1 cut(s) 417
ApeKI GCWGC 3 cut(s) 46, 49, 188
ApoI RAATTY 1 cut(s) 375
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 382, 533
AsuHPI GGTGA 1 cut(s) 407
AsuII TTCGAA 1 cut(s) 82
BaeGI GKGCMC 2 cut(s) 248, 421
BamHI GGATCC 1 cut(s) 14
BanI GGYRCC 1 cut(s) 243
BarI GAAGNNNNNNTAC 2 cut(s) 305, 337
Bbv12I GWGCWC 1 cut(s) 421
BbvI GCAGC 3 cut(s) 33, 36, 200
BccI CCATC 2 cut(s) 299, 304
BfaI CTAG 2 cut(s) 540, 569
BfoI RGCGCY 1 cut(s) 8
BglII AGATCT 1 cut(s) 505
BisI GCNGC 4 cut(s) 47, 50, 189, 536
BlsI GCNGC 4 cut(s) 48, 51, 190, 537
BmgT120I GGNCC 2 cut(s) 382, 533
BmiI GGNNCC 3 cut(s) 16, 245, 287
BmsI GCATC 2 cut(s) 364, 471
BoxI GACNNNNGTC 1 cut(s) 564
BplI GAGNNNNNCTC 2 cut(s) 545, 577
Bpu14I TTCGAA 1 cut(s) 82
BsaJI CCNNGG 2 cut(s) 424, 485
BsaWI WCCGGW 1 cut(s) 563
Bse1I ACTGG 2 cut(s) 27, 116
BseDI CCNNGG 2 cut(s) 424, 485
BseNI ACTGG 2 cut(s) 27, 116
BseSI GKGCMC 2 cut(s) 248, 421
BseXI GCAGC 3 cut(s) 33, 36, 200
BsgI GTGCAG 1 cut(s) 144
BshFI GGCC 2 cut(s) 384, 535
BshNI GGYRCC 1 cut(s) 243
BsiHKAI GWGCWC 1 cut(s) 421
BsiSI CCGG 1 cut(s) 564
BsnI GGCC 2 cut(s) 384, 535
Bsp119I TTCGAA 1 cut(s) 82
Bsp1286I GDGCHC 2 cut(s) 248, 421
Bsp1407I TGTACA 1 cut(s) 125
Bsp143I GATC 5 cut(s) 14, 197, 432, 475, 505
BspACI CCGC 1 cut(s) 536
BspANI GGCC 2 cut(s) 384, 535
BspLI GGNNCC 3 cut(s) 16, 245, 287
BspPI GGATC 4 cut(s) 9, 22, 205, 427
BspT104I TTCGAA 1 cut(s) 82
BspT107I GGYRCC 1 cut(s) 243
BsrGI TGTACA 1 cut(s) 125
BsrI ACTGG 2 cut(s) 27, 116
BssECI CCNNGG 2 cut(s) 424, 485
BssMI GATC 5 cut(s) 14, 197, 432, 475, 505
BssT1I CCWWGG 1 cut(s) 424
Bst4CI ACNGT 1 cut(s) 125
BstAUI TGTACA 1 cut(s) 125
BstBI TTCGAA 1 cut(s) 82
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 5 cut(s) 17, 200, 435, 478, 508
BstMBI GATC 5 cut(s) 14, 197, 432, 475, 505
BstMWI GCNNNNNNNGC 2 cut(s) 46, 308
BstNSI RCATGY 1 cut(s) 132
BstPAI GACNNNNGTC 1 cut(s) 564
BstSLI GKGCMC 2 cut(s) 248, 421
BstV1I GCAGC 3 cut(s) 33, 36, 200
BstX2I RGATCY 4 cut(s) 14, 197, 432, 505
BstYI RGATCY 4 cut(s) 14, 197, 432, 505
BsuRI GGCC 2 cut(s) 384, 535
BtsIMutI CAGTG 1 cut(s) 34
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 2 cut(s) 382, 533
Csp6I GTAC 2 cut(s) 113, 126
CspCI CAANNNNNGTGG 2 cut(s) 152, 187
CviAII CATG 3 cut(s) 129, 262, 325
CviQI GTAC 2 cut(s) 113, 126
DpnI GATC 5 cut(s) 16, 199, 434, 477, 507
DpnII GATC 5 cut(s) 14, 197, 432, 475, 505
Eco130I CCWWGG 1 cut(s) 424
EcoT14I CCWWGG 1 cut(s) 424
ErhI CCWWGG 1 cut(s) 424
FaeI CATG 3 cut(s) 132, 265, 328
FalI AAGNNNNNCTT 2 cut(s) 257, 289
FatI CATG 3 cut(s) 128, 261, 324
FauNDI CATATG 1 cut(s) 391
FblI GTMKAC 1 cut(s) 120
Fnu4HI GCNGC 4 cut(s) 47, 50, 189, 536
Fsp4HI GCNGC 4 cut(s) 47, 50, 189, 536
FspBI CTAG 2 cut(s) 540, 569
GlaI GCGC 1 cut(s) 6
GluI GCNGC 4 cut(s) 47, 50, 189, 536
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 384, 535
HapII CCGG 1 cut(s) 564
HhaI GCGC 1 cut(s) 7
Hin1II CATG 3 cut(s) 132, 265, 328
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 2 cut(s) 554, 560
HpaII CCGG 1 cut(s) 564
HphI GGTGA 1 cut(s) 407
Hpy166II GTNNAC 2 cut(s) 121, 419
Hpy188I TCNGA 5 cut(s) 14, 226, 475, 480, 559
Hpy188III TCNNGA 2 cut(s) 457, 569
Hpy8I GTNNAC 2 cut(s) 121, 419
HpyAV CCTTC 1 cut(s) 524
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4V TGCA 4 cut(s) 132, 161, 419, 524
HpyF10VI GCNNNNNNNGC 2 cut(s) 46, 308
Hsp92II CATG 3 cut(s) 132, 265, 328
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 5 cut(s) 14, 197, 432, 475, 505
LmnI GCTCC 1 cut(s) 291
LpnPI CCDG 4 cut(s) 40, 129, 478, 562
Lsp1109I GCAGC 3 cut(s) 33, 36, 200
LweI GCATC 2 cut(s) 364, 471
MaeI CTAG 2 cut(s) 540, 569
MalI GATC 5 cut(s) 16, 199, 434, 477, 507
MboI GATC 5 cut(s) 14, 197, 432, 475, 505
MfeI CAATTG 2 cut(s) 138, 525
MflI RGATCY 4 cut(s) 14, 197, 432, 505
MhlI GDGCHC 2 cut(s) 248, 421
MluCI AATT 4 cut(s) 138, 375, 398, 525
MlyI GAGTC 2 cut(s) 554, 563
MmeI TCCRAC 2 cut(s) 42, 313
MnlI CCTC 6 cut(s) 25, 69, 138, 345, 438, 480
MspI CCGG 1 cut(s) 564
MunI CAATTG 2 cut(s) 138, 525
MwoI GCNNNNNNNGC 2 cut(s) 46, 308
NdeI CATATG 1 cut(s) 391
NdeII GATC 5 cut(s) 14, 197, 432, 475, 505
NlaIII CATG 3 cut(s) 132, 265, 328
NlaIV GGNNCC 3 cut(s) 16, 245, 287
NmeAIII GCCGAG 1 cut(s) 510
NspI RCATGY 1 cut(s) 132
NspV TTCGAA 1 cut(s) 82
PkrI GCNGC 4 cut(s) 48, 51, 190, 537
PleI GAGTC 2 cut(s) 554, 562
PpsI GAGTC 2 cut(s) 554, 562
PshAI GACNNNNGTC 1 cut(s) 564
PspN4I GGNNCC 3 cut(s) 16, 245, 287
PspPI GGNCC 2 cut(s) 382, 533
PsuI RGATCY 4 cut(s) 14, 197, 432, 505
RsaI GTAC 2 cut(s) 114, 127
RsaNI GTAC 2 cut(s) 113, 126
SatI GCNGC 4 cut(s) 47, 50, 189, 536
Sau3AI GATC 5 cut(s) 14, 197, 432, 475, 505
Sau96I GGNCC 2 cut(s) 382, 533
SchI GAGTC 2 cut(s) 554, 563
SduI GDGCHC 2 cut(s) 248, 421
SetI ASST 3 cut(s) 36, 193, 336
SfaNI GCATC 2 cut(s) 364, 471
SfuI TTCGAA 1 cut(s) 82
Sse9I AATT 4 cut(s) 138, 375, 398, 525
SsiI CCGC 1 cut(s) 536
SspI AATATT 1 cut(s) 219
SspMI CTAG 2 cut(s) 540, 569
StyI CCWWGG 1 cut(s) 424
TaaI ACNGT 1 cut(s) 125
TaqI TCGA 1 cut(s) 82
TasI AATT 4 cut(s) 138, 375, 398, 525
TatI WGTACW 1 cut(s) 125
TauI GCSGC 1 cut(s) 538
TscAI CASTG 1 cut(s) 34
TseI GCWGC 3 cut(s) 46, 49, 188
TspDTI ATGAA 3 cut(s) 168, 278, 341
TspRI CASTG 1 cut(s) 34
VneI GTGCAC 1 cut(s) 417
XapI RAATTY 1 cut(s) 375
XbaI TCTAGA 1 cut(s) 568
XceI RCATGY 1 cut(s) 132
XmiI GTMKAC 1 cut(s) 120
XspI CTAG 2 cut(s) 540, 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.