Rh2AG147700

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001583
Physical Location & Seq
Forward (+)
13534672 .. 13536837
2166 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG147700.1

Sequence Viewer

Length: 504 bp
ATGGTAGAAGTTGAGGCTTTCTTTACAGTTGTTCTGTGGGGAGTATACTGTACATGCAAGGCAATTGAGAGGAAAGATGAAACTGCACAACAGAAGTGGCTTCTTTATTGGGCAGCTTATGGATCTTTCAGCCTTGTGGAAATATTTTCAGATAGGCTTATATCTTGGTGCCCATATTACTATCATATGAAGTTTGCCTTTCTTGTTTGGCTCCAACTTCCATCTGCTGATGGGGCGAAGCAGTTGTACATGAACCACCTACGCCCGTTCTTTTTGAGGCATCAAACTAAAGTTGATAGAATTTTGGGCCTTACGTATGCTGAATTGCTCAAACTCATTAGTGCACACCAAGGAGAGATCCACTATGTTAGGGCTATGTTCTTGAAAGTTTTTGGTTCAGATCAGCTGCCGATGGGCAGGGCTAATACAGATCTGCCACAGAACAATGCAATTGAAGGGCCGCCTAGAACAACCACAGAGTCTGACTCCGGTCTAGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

167

Amino Acids

19.35

Weight (kDa)

6.19

Isoelectric Point (pI)

44.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 15 - 90 3e-26 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 168
AccI GTMKAC 1 cut(s) 45
AciI CCGC 1 cut(s) 461
AclWI GGATC 2 cut(s) 130, 352
AcsI RAATTY 1 cut(s) 300
AfaI GTAC 2 cut(s) 52, 248
AgsI TTSAA 2 cut(s) 385, 455
AluBI AGCT 2 cut(s) 116, 406
AluI AGCT 2 cut(s) 116, 406
Alw21I GWGCWC 1 cut(s) 346
Alw44I GTGCAC 1 cut(s) 342
AlwI GGATC 2 cut(s) 130, 352
AlwNI CAGNNNCTG 1 cut(s) 482
AoxI GGCC 2 cut(s) 307, 458
ApaLI GTGCAC 1 cut(s) 342
ApeKI GCWGC 2 cut(s) 113, 406
ApoI RAATTY 1 cut(s) 300
AspS9I GGNCC 2 cut(s) 307, 458
BaeGI GKGCMC 2 cut(s) 173, 346
BanI GGYRCC 1 cut(s) 168
BarI GAAGNNNNNNTAC 2 cut(s) 230, 262
Bbv12I GWGCWC 1 cut(s) 346
BbvI GCAGC 2 cut(s) 125, 393
BccI CCATC 3 cut(s) 224, 229, 406
BfaI CTAG 2 cut(s) 465, 494
BglII AGATCT 1 cut(s) 430
BisI GCNGC 3 cut(s) 114, 407, 461
BlsI GCNGC 3 cut(s) 115, 408, 462
BmgT120I GGNCC 2 cut(s) 307, 458
BmiI GGNNCC 2 cut(s) 170, 212
BmsI GCATC 1 cut(s) 289
BoxI GACNNNNGTC 1 cut(s) 489
BplI GAGNNNNNCTC 2 cut(s) 470, 502
BsaAI YACGTR 1 cut(s) 315
BsaJI CCNNGG 1 cut(s) 349
BsaWI WCCGGW 1 cut(s) 488
BseDI CCNNGG 1 cut(s) 349
BseSI GKGCMC 2 cut(s) 173, 346
BseXI GCAGC 2 cut(s) 125, 393
BsgI GTGCAG 1 cut(s) 69
BshFI GGCC 2 cut(s) 309, 460
BshNI GGYRCC 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 346
BsiSI CCGG 1 cut(s) 489
BsnI GGCC 2 cut(s) 309, 460
Bsp1286I GDGCHC 2 cut(s) 173, 346
Bsp1407I TGTACA 2 cut(s) 50, 246
Bsp143I GATC 4 cut(s) 122, 357, 400, 430
BspACI CCGC 1 cut(s) 461
BspANI GGCC 2 cut(s) 309, 460
BspLI GGNNCC 2 cut(s) 170, 212
BspPI GGATC 2 cut(s) 130, 352
BspT107I GGYRCC 1 cut(s) 168
BsrGI TGTACA 2 cut(s) 50, 246
BssECI CCNNGG 1 cut(s) 349
BssMI GATC 4 cut(s) 122, 357, 400, 430
BssNAI GTATAC 1 cut(s) 46
BssT1I CCWWGG 1 cut(s) 349
Bst1107I GTATAC 1 cut(s) 46
Bst4CI ACNGT 2 cut(s) 28, 50
BstAUI TGTACA 2 cut(s) 50, 246
BstBAI YACGTR 1 cut(s) 315
BstKTI GATC 4 cut(s) 125, 360, 403, 433
BstMBI GATC 4 cut(s) 122, 357, 400, 430
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstNSI RCATGY 1 cut(s) 57
BstPAI GACNNNNGTC 1 cut(s) 489
BstSLI GKGCMC 2 cut(s) 173, 346
BstSNI TACGTA 1 cut(s) 315
BstV1I GCAGC 2 cut(s) 125, 393
BstX2I RGATCY 3 cut(s) 122, 357, 430
BstYI RGATCY 3 cut(s) 122, 357, 430
BstZ17I GTATAC 1 cut(s) 46
BsuRI GGCC 2 cut(s) 309, 460
CaiI CAGNNNCTG 1 cut(s) 482
Cfr13I GGNCC 2 cut(s) 307, 458
Csp6I GTAC 2 cut(s) 51, 247
CspCI CAANNNNNGTGG 2 cut(s) 77, 112
CviAII CATG 2 cut(s) 54, 250
CviQI GTAC 2 cut(s) 51, 247
DpnI GATC 4 cut(s) 124, 359, 402, 432
DpnII GATC 4 cut(s) 122, 357, 400, 430
Eco105I TACGTA 1 cut(s) 315
Eco130I CCWWGG 1 cut(s) 349
EcoT14I CCWWGG 1 cut(s) 349
ErhI CCWWGG 1 cut(s) 349
FaeI CATG 2 cut(s) 57, 253
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FatI CATG 2 cut(s) 53, 249
FauNDI CATATG 1 cut(s) 186
FblI GTMKAC 1 cut(s) 45
Fnu4HI GCNGC 3 cut(s) 114, 407, 461
Fsp4HI GCNGC 3 cut(s) 114, 407, 461
FspBI CTAG 2 cut(s) 465, 494
GluI GCNGC 3 cut(s) 114, 407, 461
HaeIII GGCC 2 cut(s) 309, 460
HapII CCGG 1 cut(s) 489
Hin1II CATG 2 cut(s) 57, 253
HinfI GANTC 2 cut(s) 479, 485
HpaII CCGG 1 cut(s) 489
Hpy166II GTNNAC 2 cut(s) 46, 344
Hpy188I TCNGA 3 cut(s) 151, 400, 484
Hpy188III TCNNGA 2 cut(s) 382, 494
Hpy8I GTNNAC 2 cut(s) 46, 344
HpyAV CCTTC 1 cut(s) 449
HpyCH4III ACNGT 2 cut(s) 28, 50
HpyCH4IV ACGT 1 cut(s) 314
HpyCH4V TGCA 4 cut(s) 57, 86, 344, 449
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpySE526I ACGT 1 cut(s) 314
Hsp92II CATG 2 cut(s) 57, 253
Kzo9I GATC 4 cut(s) 122, 357, 400, 430
LmnI GCTCC 1 cut(s) 216
LpnPI CCDG 1 cut(s) 403
Lsp1109I GCAGC 2 cut(s) 125, 393
LweI GCATC 1 cut(s) 289
MaeI CTAG 2 cut(s) 465, 494
MaeII ACGT 1 cut(s) 314
MalI GATC 4 cut(s) 124, 359, 402, 432
MboI GATC 4 cut(s) 122, 357, 400, 430
MfeI CAATTG 2 cut(s) 63, 450
MflI RGATCY 3 cut(s) 122, 357, 430
MhlI GDGCHC 2 cut(s) 173, 346
MluCI AATT 4 cut(s) 63, 300, 323, 450
MlyI GAGTC 2 cut(s) 479, 488
MmeI TCCRAC 1 cut(s) 238
MnlI CCTC 3 cut(s) 7, 63, 270
MspA1I CMGCKG 1 cut(s) 406
MspI CCGG 1 cut(s) 489
MunI CAATTG 2 cut(s) 63, 450
MwoI GCNNNNNNNGC 1 cut(s) 233
NdeI CATATG 1 cut(s) 186
NdeII GATC 4 cut(s) 122, 357, 400, 430
NlaIII CATG 2 cut(s) 57, 253
NlaIV GGNNCC 2 cut(s) 170, 212
NspI RCATGY 1 cut(s) 57
PkrI GCNGC 3 cut(s) 115, 408, 462
PleI GAGTC 2 cut(s) 479, 487
PpsI GAGTC 2 cut(s) 479, 487
Ppu21I YACGTR 1 cut(s) 315
PshAI GACNNNNGTC 1 cut(s) 489
PspN4I GGNNCC 2 cut(s) 170, 212
PspPI GGNCC 2 cut(s) 307, 458
PstNI CAGNNNCTG 1 cut(s) 482
PsuI RGATCY 3 cut(s) 122, 357, 430
PvuII CAGCTG 1 cut(s) 406
RsaI GTAC 2 cut(s) 52, 248
RsaNI GTAC 2 cut(s) 51, 247
SatI GCNGC 3 cut(s) 114, 407, 461
Sau3AI GATC 4 cut(s) 122, 357, 400, 430
Sau96I GGNCC 2 cut(s) 307, 458
SchI GAGTC 2 cut(s) 479, 488
SduI GDGCHC 2 cut(s) 173, 346
SetI ASST 4 cut(s) 118, 261, 317, 408
SfaNI GCATC 1 cut(s) 289
SnaBI TACGTA 1 cut(s) 315
Sse9I AATT 4 cut(s) 63, 300, 323, 450
SsiI CCGC 1 cut(s) 461
SspI AATATT 1 cut(s) 144
SspMI CTAG 2 cut(s) 465, 494
StyI CCWWGG 1 cut(s) 349
TaaI ACNGT 2 cut(s) 28, 50
TaiI ACGT 1 cut(s) 317
TasI AATT 4 cut(s) 63, 300, 323, 450
TatI WGTACW 2 cut(s) 50, 246
TauI GCSGC 1 cut(s) 463
TseI GCWGC 2 cut(s) 113, 406
TspDTI ATGAA 3 cut(s) 93, 203, 266
VneI GTGCAC 1 cut(s) 342
XapI RAATTY 1 cut(s) 300
XbaI TCTAGA 1 cut(s) 493
XceI RCATGY 1 cut(s) 57
XmiI GTMKAC 1 cut(s) 45
XspI CTAG 2 cut(s) 465, 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.