Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000176

Orthogroup ID

OG0001583

Physical Location & Seq

Genomic Coordinates Reverse (-)

56816 .. 60340

Gene Structure 3525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_176G00430980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCTTTTCCGAGCGAGGTCGGATTGCGCGTGCTGCTCTGCCCTCTTGGTTCCAACGTCATCGTCCGCACTGCTTGCTGCTCTGTGGGGGTCGCTTTGCCTGTTTACTCTACTTTTAAAGCTATTGAGAGCAAAGACCGAGACGAACAGCAGCGGTGGCTTCTTTACTGGGCAGCTTATGGATCTTTCAGTATAGCAGAAGTGTTTTCAGACAAACTTATCTCCTGGGTTCCACTCTACTATCACATGAAGTTTGCATTTCTCGTTTGGTTACAGCTTCCAACTGCAAATGGGGCAAAGCATTTGTATATGAGGCATCTGCGTCCGTTCCTGTTGAGGCATCAAGCACGACTTGATCAAATTGTAGAGTTTTTATATGCTGAAACGAGTAAATTCATCAGTTCACACCAAGGAGAATTACAGTTTGCAAGGGATCTTTTGATGAAAATTGTGGGCTCAGCAAGTGGAGTAGTTAGGCAACTTGCGCACCCAGGACAAAAACAACCAAATCGTGCAATTCGAGGCCCTGAAGAACAAAGTGAGGACACTGGATCAGATAAAGACGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

189

Amino Acids

21.46

Weight (kDa)

8.43

Isoelectric Point (pI)

46.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TB2_DP1_HVA22	PF03134	34 - 110	2.8e-29	TB2/DP1, HVA22 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36720
fragaria_vesca	FvH4_1g13870 FvH4_1g13870 FvH4_1g13870 FvH4_1g13870 FvH4_1g13870 FvH4_1g13870 FvH4_1g13870 FvH4_1g13870 FvH4_1g13870 FvH4_2g08300
malus_domestica	MD10G1080600.v1.1
prunus_persica	Prupe.7G150800_v2.0.a1 Prupe.7G150800_v2.0.a1 Prupe.8G101900_v2.0.a1 Prupe.8G101900_v2.0.a1
pyrus_communis	pycom02g11960 pycom10g06380
rosa_chinensis	RchiOBHm_Chr2g0102181 RchiOBHm_Chr6g0263171
rosa_laevigata	RLG00000014366 RLG00000017086 RLG00000017136
rosa_multiflora	Rmu_co8296953.1_g000001 Rmu_sc0000157.1_g000044 Rmu_sc0002481.1_g000058 Rmu_sc0023885.1_g000001
rosa_roxburghii	Rroxscaffold_176G00430980 Rroxscaffold_176G00430990 Rroxscaffold_2G00140720 Rroxscaffold_7G00204600
rosa_rugosa	Rorug02G0105000 Rorug02G0105100 Rorug02G0105100 Rorug02G0105200 Rorug06G0004000
rosa_samantha	Rh2AG147700 Rh2AG153300 Rh2BG153000 Rh2BG159200 Rh2CG158700 Rh2DG153300 Rh2DG158900 Rh6AG123200 Rh6BG118200 Rh6CG116400 Rh6DG104900
rosa_wichuraiana	Rw2G011510 Rw2G011970 Rw6G010590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	486
AccII	CGCG	1 cut(s)	30
AciI	CCGC	2 cut(s)	67, 154
AclWI	GGATC	3 cut(s)	190, 441, 559
AcsI	RAATTY	1 cut(s)	392
AcuI	CTGAAG	1 cut(s)	549
AjnI	CCWGG	2 cut(s)	224, 490
AluBI	AGCT	3 cut(s)	122, 176, 277
AluI	AGCT	3 cut(s)	122, 176, 277
Alw26I	GTCTC	1 cut(s)	135
AlwI	GGATC	3 cut(s)	190, 441, 559
AoxI	GGCC	1 cut(s)	523
ApeKI	GCWGC	4 cut(s)	34, 78, 151, 173
ApoI	RAATTY	1 cut(s)	392
AspLEI	GCGC	2 cut(s)	30, 487
AspS9I	GGNCC	1 cut(s)	524
BanII	GRGCYC	1 cut(s)	458
BbvI	GCAGC	4 cut(s)	21, 65, 163, 185
BciT130I	CCWGG	2 cut(s)	226, 492
BclI	TGATCA	1 cut(s)	355
BcoDI	GTCTC	1 cut(s)	135
BisI	GCNGC	4 cut(s)	35, 79, 152, 174
BlpI	GCTNAGC	1 cut(s)	457
BlsI	GCNGC	4 cut(s)	36, 80, 153, 175
Bme1390I	CCNGG	2 cut(s)	226, 492
BmgT120I	GGNCC	1 cut(s)	524
BmiI	GGNNCC	2 cut(s)	52, 231
BmrFI	CCNGG	2 cut(s)	226, 492
BmrI	ACTGGG	1 cut(s)	178
BmsI	GCATC	2 cut(s)	325, 349
BmuI	ACTGGG	1 cut(s)	178
Bpu1102I	GCTNAGC	1 cut(s)	457
BsaJI	CCNNGG	3 cut(s)	225, 409, 490
Bse1I	ACTGG	2 cut(s)	173, 553
BseBI	CCWGG	2 cut(s)	226, 492
BseDI	CCNNGG	3 cut(s)	225, 409, 490
BseMII	CTCAG	1 cut(s)	471
BseNI	ACTGG	2 cut(s)	173, 553
BseXI	GCAGC	4 cut(s)	21, 65, 163, 185
Bsh1236I	CGCG	1 cut(s)	30
BshFI	GGCC	1 cut(s)	525
BsmAI	GTCTC	1 cut(s)	135
BsmBI	CGTCTC	1 cut(s)	135
BsnI	GGCC	1 cut(s)	525
Bsp1286I	GDGCHC	1 cut(s)	458
Bsp143I	GATC	4 cut(s)	182, 355, 433, 551
Bsp1720I	GCTNAGC	1 cut(s)	457
BspACI	CCGC	2 cut(s)	67, 154
BspANI	GGCC	1 cut(s)	525
BspCNI	CTCAG	1 cut(s)	470
BspFNI	CGCG	1 cut(s)	30
BspLI	GGNNCC	2 cut(s)	52, 231
BspPI	GGATC	3 cut(s)	190, 441, 559
BsrI	ACTGG	2 cut(s)	173, 553
BssECI	CCNNGG	3 cut(s)	225, 409, 490
BssMI	GATC	4 cut(s)	182, 355, 433, 551
BssT1I	CCWWGG	1 cut(s)	409
Bst2UI	CCWGG	2 cut(s)	226, 492
Bst4CI	ACNGT	1 cut(s)	423
BstAPI	GCANNNNNTGC	1 cut(s)	75
BstC8I	GCNNGC	2 cut(s)	32, 76
BstDEI	CTNAG	1 cut(s)	457
BstFNI	CGCG	1 cut(s)	30
BstHHI	GCGC	2 cut(s)	30, 487
BstKTI	GATC	4 cut(s)	185, 358, 436, 554
BstMAI	GTCTC	1 cut(s)	135
BstMBI	GATC	4 cut(s)	182, 355, 433, 551
BstMWI	GCNNNNNNNGC	5 cut(s)	34, 75, 157, 293, 484
BstNI	CCWGG	2 cut(s)	226, 492
BstSCI	CCNGG	2 cut(s)	224, 490
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	4 cut(s)	21, 65, 163, 185
BstX2I	RGATCY	2 cut(s)	182, 433
BstYI	RGATCY	2 cut(s)	182, 433
BsuRI	GGCC	1 cut(s)	525
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	2 cut(s)	69, 546
Cac8I	GCNNGC	2 cut(s)	32, 76
CfoI	GCGC	2 cut(s)	30, 487
Cfr13I	GGNCC	1 cut(s)	524
CseI	GACGC	1 cut(s)	311
CviAII	CATG	1 cut(s)	247
CviJI	RGCY	7 cut(s)	5, 122, 160, 176, 277, 456, 525
CviKI_1	RGCY	7 cut(s)	5, 122, 160, 176, 277, 456, 525
DdeI	CTNAG	1 cut(s)	457
DpnI	GATC	4 cut(s)	184, 357, 435, 553
DpnII	GATC	4 cut(s)	182, 355, 433, 551
DraI	TTTAAA	1 cut(s)	118
Eco130I	CCWWGG	1 cut(s)	409
Eco24I	GRGCYC	1 cut(s)	458
Eco57I	CTGAAG	1 cut(s)	549
EcoO109I	RGGNCCY	1 cut(s)	524
EcoRII	CCWGG	2 cut(s)	224, 490
EcoT14I	CCWWGG	1 cut(s)	409
EcoT38I	GRGCYC	1 cut(s)	458
ErhI	CCWWGG	1 cut(s)	409
Esp3I	CGTCTC	1 cut(s)	135
FaeI	CATG	1 cut(s)	250
FaiI	YATR	7 cut(s)	180, 194, 248, 309, 311, 376, 378
FalI	AAGNNNNNCTT	2 cut(s)	336, 368
FatI	CATG	1 cut(s)	246
FbaI	TGATCA	1 cut(s)	355
Fnu4HI	GCNGC	4 cut(s)	35, 79, 152, 174
FriOI	GRGCYC	1 cut(s)	458
Fsp4HI	GCNGC	4 cut(s)	35, 79, 152, 174
FspI	TGCGCA	1 cut(s)	486
GlaI	GCGC	2 cut(s)	29, 486
GluI	GCNGC	4 cut(s)	35, 79, 152, 174
HaeIII	GGCC	1 cut(s)	525
HgaI	GACGC	1 cut(s)	311
HhaI	GCGC	2 cut(s)	30, 487
Hin1II	CATG	1 cut(s)	250
Hin6I	GCGC	2 cut(s)	28, 485
HinP1I	GCGC	2 cut(s)	28, 485
Hpy166II	GTNNAC	2 cut(s)	106, 404
Hpy188I	TCNGA	4 cut(s)	12, 23, 211, 556
Hpy8I	GTNNAC	2 cut(s)	106, 404
HpyCH4III	ACNGT	1 cut(s)	423
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	4 cut(s)	257, 287, 428, 515
HpyF10VI	GCNNNNNNNGC	5 cut(s)	34, 75, 157, 293, 484
HpyF3I	CTNAG	1 cut(s)	457
HpySE526I	ACGT	1 cut(s)	57
Hsp92II	CATG	1 cut(s)	250
HspAI	GCGC	2 cut(s)	28, 485
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	4 cut(s)	182, 355, 433, 551
LpnPI	CCDG	9 cut(s)	114, 154, 211, 238, 344, 477, 504, 534, 540
Lsp1109I	GCAGC	4 cut(s)	21, 65, 163, 185
LweI	GCATC	2 cut(s)	325, 349
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	1 cut(s)	270
MalI	GATC	4 cut(s)	184, 357, 435, 553
MboI	GATC	4 cut(s)	182, 355, 433, 551
MboII	GAAGA	1 cut(s)	542
MflI	RGATCY	2 cut(s)	182, 433
MhlI	GDGCHC	1 cut(s)	458
MluCI	AATT	5 cut(s)	360, 392, 416, 447, 516
MmeI	TCCRAC	2 cut(s)	78, 305
MnlI	CCTC	6 cut(s)	10, 54, 306, 330, 515, 535
MseI	TTAA	1 cut(s)	117
MspA1I	CMGCKG	1 cut(s)	154
MspR9I	CCNGG	2 cut(s)	226, 492
MvaI	CCWGG	2 cut(s)	226, 492
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	5 cut(s)	34, 75, 157, 293, 484
NdeII	GATC	4 cut(s)	182, 355, 433, 551
NlaIII	CATG	1 cut(s)	250
NlaIV	GGNNCC	2 cut(s)	52, 231
NsbI	TGCGCA	1 cut(s)	486
PcsI	WCGNNNNNNNCGW	2 cut(s)	27, 517
PkrI	GCNGC	4 cut(s)	36, 80, 153, 175
Psp6I	CCWGG	2 cut(s)	224, 490
PspGI	CCWGG	2 cut(s)	224, 490
PspN4I	GGNNCC	2 cut(s)	52, 231
PspPI	GGNCC	1 cut(s)	524
PsuI	RGATCY	2 cut(s)	182, 433
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	4 cut(s)	35, 79, 152, 174
Sau3AI	GATC	4 cut(s)	182, 355, 433, 551
Sau96I	GGNCC	1 cut(s)	524
ScrFI	CCNGG	2 cut(s)	226, 492
SduI	GDGCHC	1 cut(s)	458
SetI	ASST	5 cut(s)	21, 60, 124, 178, 279
SfaNI	GCATC	2 cut(s)	325, 349
Sse9I	AATT	5 cut(s)	360, 392, 416, 447, 516
SsiI	CCGC	2 cut(s)	67, 154
StyD4I	CCNGG	2 cut(s)	224, 490
StyI	CCWWGG	1 cut(s)	409
TaaI	ACNGT	1 cut(s)	423
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	1 cut(s)	520
TaqII	GACCGA	1 cut(s)	153
TasI	AATT	5 cut(s)	360, 392, 416, 447, 516
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	2 cut(s)	76, 553
TseI	GCWGC	4 cut(s)	34, 78, 151, 173
TspDTI	ATGAA	3 cut(s)	263, 385, 458
TspGWI	ACGGA	1 cut(s)	315
TspRI	CASTG	2 cut(s)	76, 553
XapI	RAATTY	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.