Rh6DG104900

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001583
Physical Location & Seq
Reverse (-)
13259891 .. 13263470
3580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG104900.1

Sequence Viewer

Length: 522 bp
ATGGCTTTTCCGAGCGAGGTCGGATTGCGTGTGCTGCTCTGCCCTCTTGGTTCCAACGTCATCGTCCGCACTGCTTGCTGCTCTGTGGGGGTCGCTTTGCCTGTTTACTCAACTTTCAAAGCTATTGAGAGCAAAGACCGAGACGAACAGCAGCGGTGGCTTCTTTACTGGGCAGCTTATGGATCTTTCAGTATAGCAGAAGTGTTTTCAGACAAACTTATCTCCTGGGTTCCACTCTACTATCACATGAAGTTTGCATTTCTCGTTTGGTTACAACTTCCAAGTGCAAATGGGGCAAAGCATTTGTATATGAGGCATCTGCGTCCATTCCTGTTGAGGCATCAAGCACGACTTGATCAAGTTGTAGAGTTTTTATATGCTGAAACGAGTAAATTCATCAGTTCACACCAAGGAGAATTACAGTTTGCAAGGGATCTTTTTATGAAAATTGTGGGCTCAGGTATGAATGCAGCCGTATTTACTGATATATCTATTAGCAAACATTATTGTCAGCTTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

173

Amino Acids

19.82

Weight (kDa)

9.08

Isoelectric Point (pI)

42.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 34 - 110 1.6e-29 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 67, 154
AclWI GGATC 2 cut(s) 190, 441
AcsI RAATTY 1 cut(s) 392
AflII CTTAAG 1 cut(s) 515
AgsI TTSAA 1 cut(s) 118
AjnI CCWGG 1 cut(s) 224
AluBI AGCT 3 cut(s) 122, 176, 514
AluI AGCT 3 cut(s) 122, 176, 514
Alw26I GTCTC 1 cut(s) 135
AlwI GGATC 2 cut(s) 190, 441
ApeKI GCWGC 5 cut(s) 34, 78, 151, 173, 470
ApoI RAATTY 1 cut(s) 392
BanII GRGCYC 1 cut(s) 458
BbvI GCAGC 5 cut(s) 21, 65, 163, 185, 482
BceAI ACGGC 1 cut(s) 458
BciT130I CCWGG 1 cut(s) 226
BclI TGATCA 1 cut(s) 355
BcoDI GTCTC 1 cut(s) 135
BfrI CTTAAG 1 cut(s) 515
BisI GCNGC 5 cut(s) 35, 79, 152, 174, 471
BlsI GCNGC 5 cut(s) 36, 80, 153, 175, 472
Bme1390I CCNGG 1 cut(s) 226
BmiI GGNNCC 2 cut(s) 52, 231
BmrFI CCNGG 1 cut(s) 226
BmrI ACTGGG 1 cut(s) 178
BmsI GCATC 2 cut(s) 325, 349
BmuI ACTGGG 1 cut(s) 178
Bpu10I CCTNAGC 1 cut(s) 457
BsaJI CCNNGG 2 cut(s) 225, 409
Bse1I ACTGG 1 cut(s) 173
BseBI CCWGG 1 cut(s) 226
BseDI CCNNGG 2 cut(s) 225, 409
BseMII CTCAG 1 cut(s) 471
BseNI ACTGG 1 cut(s) 173
BseXI GCAGC 5 cut(s) 21, 65, 163, 185, 482
BsmAI GTCTC 1 cut(s) 135
BsmBI CGTCTC 1 cut(s) 135
BsmI GAATGC 1 cut(s) 472
Bsp1286I GDGCHC 1 cut(s) 458
Bsp143I GATC 3 cut(s) 182, 355, 433
BspACI CCGC 2 cut(s) 67, 154
BspCNI CTCAG 1 cut(s) 470
BspLI GGNNCC 2 cut(s) 52, 231
BspPI GGATC 2 cut(s) 190, 441
BspTI CTTAAG 1 cut(s) 515
BsrI ACTGG 1 cut(s) 173
BssECI CCNNGG 2 cut(s) 225, 409
BssMI GATC 3 cut(s) 182, 355, 433
BssT1I CCWWGG 1 cut(s) 409
Bst2UI CCWGG 1 cut(s) 226
Bst4CI ACNGT 1 cut(s) 423
BstAFI CTTAAG 1 cut(s) 515
BstAPI GCANNNNNTGC 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 1 cut(s) 457
BstKTI GATC 3 cut(s) 185, 358, 436
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 3 cut(s) 182, 355, 433
BstMWI GCNNNNNNNGC 4 cut(s) 34, 75, 157, 293
BstNI CCWGG 1 cut(s) 226
BstSCI CCNGG 1 cut(s) 224
BstV1I GCAGC 5 cut(s) 21, 65, 163, 185, 482
BstX2I RGATCY 2 cut(s) 182, 433
BstYI RGATCY 2 cut(s) 182, 433
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 1 cut(s) 69
Cac8I GCNNGC 1 cut(s) 76
CseI GACGC 1 cut(s) 311
CviAII CATG 1 cut(s) 247
CviJI RGCY 7 cut(s) 5, 122, 160, 176, 456, 473, 514
CviKI_1 RGCY 7 cut(s) 5, 122, 160, 176, 456, 473, 514
DdeI CTNAG 1 cut(s) 457
DpnI GATC 3 cut(s) 184, 357, 435
DpnII GATC 3 cut(s) 182, 355, 433
Eco130I CCWWGG 1 cut(s) 409
Eco24I GRGCYC 1 cut(s) 458
EcoRII CCWGG 1 cut(s) 224
EcoT14I CCWWGG 1 cut(s) 409
EcoT38I GRGCYC 1 cut(s) 458
ErhI CCWWGG 1 cut(s) 409
Esp3I CGTCTC 1 cut(s) 135
FaeI CATG 1 cut(s) 250
FalI AAGNNNNNCTT 2 cut(s) 336, 368
FatI CATG 1 cut(s) 246
FbaI TGATCA 1 cut(s) 355
Fnu4HI GCNGC 5 cut(s) 35, 79, 152, 174, 471
FriOI GRGCYC 1 cut(s) 458
Fsp4HI GCNGC 5 cut(s) 35, 79, 152, 174, 471
GluI GCNGC 5 cut(s) 35, 79, 152, 174, 471
HgaI GACGC 1 cut(s) 311
Hin1II CATG 1 cut(s) 250
Hpy166II GTNNAC 2 cut(s) 106, 404
Hpy188I TCNGA 3 cut(s) 12, 23, 211
Hpy8I GTNNAC 2 cut(s) 106, 404
HpyCH4III ACNGT 1 cut(s) 423
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 4 cut(s) 257, 287, 428, 470
HpyF10VI GCNNNNNNNGC 4 cut(s) 34, 75, 157, 293
HpyF3I CTNAG 1 cut(s) 457
HpySE526I ACGT 1 cut(s) 57
Hsp92II CATG 1 cut(s) 250
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 3 cut(s) 182, 355, 433
LpnPI CCDG 6 cut(s) 114, 154, 211, 238, 344, 444
Lsp1109I GCAGC 5 cut(s) 21, 65, 163, 185, 482
LweI GCATC 2 cut(s) 325, 349
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 1 cut(s) 270
MalI GATC 3 cut(s) 184, 357, 435
MboI GATC 3 cut(s) 182, 355, 433
MflI RGATCY 2 cut(s) 182, 433
MhlI GDGCHC 1 cut(s) 458
MluCI AATT 3 cut(s) 392, 416, 447
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 4 cut(s) 10, 54, 306, 330
MseI TTAA 1 cut(s) 516
MspA1I CMGCKG 1 cut(s) 154
MspCI CTTAAG 1 cut(s) 515
MspR9I CCNGG 1 cut(s) 226
Mva1269I GAATGC 1 cut(s) 472
MvaI CCWGG 1 cut(s) 226
MwoI GCNNNNNNNGC 4 cut(s) 34, 75, 157, 293
NdeII GATC 3 cut(s) 182, 355, 433
NlaIII CATG 1 cut(s) 250
NlaIV GGNNCC 2 cut(s) 52, 231
PctI GAATGC 1 cut(s) 472
PkrI GCNGC 5 cut(s) 36, 80, 153, 175, 472
Psp6I CCWGG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 2 cut(s) 52, 231
PsuI RGATCY 2 cut(s) 182, 433
SaqAI TTAA 1 cut(s) 516
SatI GCNGC 5 cut(s) 35, 79, 152, 174, 471
Sau3AI GATC 3 cut(s) 182, 355, 433
ScrFI CCNGG 1 cut(s) 226
SduI GDGCHC 1 cut(s) 458
SetI ASST 6 cut(s) 21, 60, 124, 178, 463, 516
SfaNI GCATC 2 cut(s) 325, 349
SmlI CTYRAG 1 cut(s) 515
SmoI CTYRAG 1 cut(s) 515
Sse9I AATT 3 cut(s) 392, 416, 447
SsiI CCGC 2 cut(s) 67, 154
StyD4I CCNGG 1 cut(s) 224
StyI CCWWGG 1 cut(s) 409
TaaI ACNGT 1 cut(s) 423
TaiI ACGT 1 cut(s) 60
TaqII GACCGA 1 cut(s) 153
TasI AATT 3 cut(s) 392, 416, 447
Tru1I TTAA 1 cut(s) 516
Tru9I TTAA 1 cut(s) 516
TscAI CASTG 1 cut(s) 76
TseI GCWGC 5 cut(s) 34, 78, 151, 173, 470
TspDTI ATGAA 4 cut(s) 263, 385, 458, 479
TspRI CASTG 1 cut(s) 76
Vha464I CTTAAG 1 cut(s) 515
XapI RAATTY 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.