Prupe.8G101900_v2.0.a1

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0001583
Physical Location & Seq
Forward (+)
13346877 .. 13350607
3731 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G101900.2

Sequence Viewer

Length: 570 bp
ATGGCTCTCCCAAGCGAGGTCGGGTTGCGCGTACTGCTTTGCCCTCTTGGTTCCAACGTGCTTGTCCGGACTGCCTGCTGCTCTGTGGGGATTGCTTTACCCGTTTACTCAACGTTTAAAGCTATTGAGAATAAGGATCAAGCAGAGCAACAAAGGTGGCTCCTTTATTGGGCAGCTTATGGATCTTTCAGTATTGCAGAAGTATTTTCAGACAAGATTCTGTCCTGGTTTCCGCTCTACTACCATGTGAAGTTTGCATTTCTTGTTTGGTTACAACTTCCATCCTCAAATGGGGCAAAGCATCTGTATACAAGCCTTCTGCGTCCGTTCTTTCTGAGGCATCAAGCCCGACTTGATCAAGCTGTGGATTTTATATATGGTCAAATGAGTAAATTCATCAGTTCACACCAAGGAGATTTGCAGTTTGCGAGGGTGCTTTTCATGAAGGTTTTGGCAGCAGCAAGTGGGGTAGTTAAGGGTGTTGTGCCCCATGGGCAAAGGCAAGCAAGTCCGGCAATCGAAGACCCTGCGAAACAAACTCAGGACTCTGAATCAGAAAAAGATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

190

Amino Acids

21.19

Weight (kDa)

8.42

Isoelectric Point (pI)

53.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 235
AccI GTMKAC 1 cut(s) 308
AccII CGCG 1 cut(s) 30
AccIII TCCGGA 1 cut(s) 66
AciI CCGC 1 cut(s) 233
AclI AACGTT 1 cut(s) 113
AclWI GGATC 2 cut(s) 144, 190
AcsI RAATTY 1 cut(s) 392
AfaI GTAC 1 cut(s) 33
AfiI CCNNNNNNNGG 3 cut(s) 16, 169, 291
AjnI CCWGG 1 cut(s) 224
AluBI AGCT 3 cut(s) 122, 176, 362
AluI AGCT 3 cut(s) 122, 176, 362
AlwI GGATC 2 cut(s) 144, 190
Aor13HI TCCGGA 1 cut(s) 66
ApeKI GCWGC 4 cut(s) 78, 173, 455, 458
ApoI RAATTY 1 cut(s) 392
AspLEI GCGC 1 cut(s) 30
BaeGI GKGCMC 1 cut(s) 489
BbsI GAAGAC 1 cut(s) 528
BbvI GCAGC 4 cut(s) 65, 185, 467, 470
BccI CCATC 1 cut(s) 289
BcgI CGANNNNNNTGC 2 cut(s) 509, 543
BciT130I CCWGG 1 cut(s) 226
BclI TGATCA 1 cut(s) 355
BglI GCCNNNNNGGC 1 cut(s) 493
BisI GCNGC 4 cut(s) 79, 174, 456, 459
BlsI GCNGC 4 cut(s) 80, 175, 457, 460
Bme1390I CCNGG 1 cut(s) 226
BmiI GGNNCC 2 cut(s) 52, 161
BmrFI CCNGG 1 cut(s) 226
BmsI GCATC 2 cut(s) 310, 349
BpiI GAAGAC 1 cut(s) 528
BsaJI CCNNGG 2 cut(s) 409, 490
BsaWI WCCGGW 1 cut(s) 66
Bsc4I CCNNNNNNNGG 3 cut(s) 16, 169, 291
BseAI TCCGGA 1 cut(s) 66
BseBI CCWGG 1 cut(s) 226
BseDI CCNNGG 2 cut(s) 409, 490
BseGI GGATG 1 cut(s) 281
BseLI CCNNNNNNNGG 3 cut(s) 16, 169, 291
BseMII CTCAG 2 cut(s) 326, 554
BseSI GKGCMC 1 cut(s) 489
BseXI GCAGC 4 cut(s) 65, 185, 467, 470
Bsh1236I CGCG 1 cut(s) 30
BsiSI CCGG 2 cut(s) 67, 512
BslI CCNNNNNNNGG 3 cut(s) 16, 169, 291
Bsp1286I GDGCHC 1 cut(s) 489
Bsp13I TCCGGA 1 cut(s) 66
Bsp143I GATC 3 cut(s) 136, 182, 355
Bsp19I CCATGG 1 cut(s) 490
BspACI CCGC 1 cut(s) 233
BspCNI CTCAG 2 cut(s) 327, 553
BspEI TCCGGA 1 cut(s) 66
BspFNI CGCG 1 cut(s) 30
BspHI TCATGA 1 cut(s) 441
BspLI GGNNCC 2 cut(s) 52, 161
BspPI GGATC 2 cut(s) 144, 190
BsrBI CCGCTC 1 cut(s) 235
BssECI CCNNGG 2 cut(s) 409, 490
BssMI GATC 3 cut(s) 136, 182, 355
BssNAI GTATAC 1 cut(s) 309
BssT1I CCWWGG 2 cut(s) 409, 490
Bst1107I GTATAC 1 cut(s) 309
Bst2UI CCWGG 1 cut(s) 226
BstC8I GCNNGC 2 cut(s) 76, 504
BstDEI CTNAG 2 cut(s) 335, 540
BstDSI CCRYGG 1 cut(s) 490
BstF5I GGATG 1 cut(s) 281
BstFNI CGCG 1 cut(s) 30
BstHHI GCGC 1 cut(s) 30
BstKTI GATC 3 cut(s) 139, 185, 358
BstMBI GATC 3 cut(s) 136, 182, 355
BstMWI GCNNNNNNNGC 3 cut(s) 34, 493, 512
BstNI CCWGG 1 cut(s) 226
BstSCI CCNGG 1 cut(s) 224
BstSLI GKGCMC 1 cut(s) 489
BstUI CGCG 1 cut(s) 30
BstV1I GCAGC 4 cut(s) 65, 185, 467, 470
BstV2I GAAGAC 1 cut(s) 528
BstX2I RGATCY 1 cut(s) 182
BstYI RGATCY 1 cut(s) 182
BstZ17I GTATAC 1 cut(s) 309
BtgI CCRYGG 1 cut(s) 490
BtsCI GGATG 1 cut(s) 281
Cac8I GCNNGC 2 cut(s) 76, 504
CciI TCATGA 1 cut(s) 441
CfoI GCGC 1 cut(s) 30
CseI GACGC 1 cut(s) 311
Csp6I GTAC 1 cut(s) 32
CspCI CAANNNNNGTGG 2 cut(s) 137, 172
CviAII CATG 3 cut(s) 245, 442, 491
CviJI RGCY 7 cut(s) 5, 122, 160, 176, 315, 347, 362
CviKI_1 RGCY 7 cut(s) 5, 122, 160, 176, 315, 347, 362
CviQI GTAC 1 cut(s) 32
DdeI CTNAG 2 cut(s) 335, 540
DpnI GATC 3 cut(s) 138, 184, 357
DpnII GATC 3 cut(s) 136, 182, 355
DraI TTTAAA 1 cut(s) 118
Eco130I CCWWGG 2 cut(s) 409, 490
EcoRII CCWGG 1 cut(s) 224
EcoT14I CCWWGG 2 cut(s) 409, 490
ErhI CCWWGG 2 cut(s) 409, 490
FaeI CATG 3 cut(s) 248, 445, 494
FaiI YATR 8 cut(s) 180, 246, 309, 374, 376, 378, 443, 492
FalI AAGNNNNNCTT 2 cut(s) 336, 368
FatI CATG 3 cut(s) 244, 441, 490
FbaI TGATCA 1 cut(s) 355
FblI GTMKAC 1 cut(s) 308
Fnu4HI GCNGC 4 cut(s) 79, 174, 456, 459
FokI GGATG 1 cut(s) 268
Fsp4HI GCNGC 4 cut(s) 79, 174, 456, 459
GlaI GCGC 1 cut(s) 29
GluI GCNGC 4 cut(s) 79, 174, 456, 459
HapII CCGG 2 cut(s) 67, 512
HgaI GACGC 1 cut(s) 311
HhaI GCGC 1 cut(s) 30
Hin1II CATG 3 cut(s) 248, 445, 494
Hin6I GCGC 1 cut(s) 28
HinP1I GCGC 1 cut(s) 28
HinfI GANTC 3 cut(s) 217, 545, 551
HpaII CCGG 2 cut(s) 67, 512
Hpy166II GTNNAC 3 cut(s) 106, 309, 404
Hpy188I TCNGA 4 cut(s) 211, 336, 550, 556
Hpy188III TCNNGA 3 cut(s) 67, 442, 542
Hpy8I GTNNAC 3 cut(s) 106, 309, 404
HpyAV CCTTC 2 cut(s) 326, 439
HpyCH4IV ACGT 2 cut(s) 57, 113
HpyCH4V TGCA 3 cut(s) 197, 257, 421
HpyF10VI GCNNNNNNNGC 3 cut(s) 34, 493, 512
HpyF3I CTNAG 2 cut(s) 335, 540
HpySE526I ACGT 2 cut(s) 57, 113
Hsp92II CATG 3 cut(s) 248, 445, 494
HspAI GCGC 1 cut(s) 28
Kpn2I TCCGGA 1 cut(s) 66
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 3 cut(s) 136, 182, 355
LmnI GCTCC 1 cut(s) 165
LpnPI CCDG 7 cut(s) 80, 88, 211, 238, 525, 527, 540
Lsp1109I GCAGC 4 cut(s) 65, 185, 467, 470
LweI GCATC 2 cut(s) 310, 349
MaeII ACGT 2 cut(s) 57, 113
MaeIII GTNAC 1 cut(s) 270
MalI GATC 3 cut(s) 138, 184, 357
MbiI CCGCTC 1 cut(s) 235
MboI GATC 3 cut(s) 136, 182, 355
MboII GAAGA 1 cut(s) 533
MflI RGATCY 1 cut(s) 182
MhlI GDGCHC 1 cut(s) 489
MluCI AATT 1 cut(s) 392
MlyI GAGTC 1 cut(s) 539
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 5 cut(s) 10, 54, 295, 330, 423
MroI TCCGGA 1 cut(s) 66
MseI TTAA 2 cut(s) 117, 474
MspI CCGG 2 cut(s) 67, 512
MspR9I CCNGG 1 cut(s) 226
MvaI CCWGG 1 cut(s) 226
MvnI CGCG 1 cut(s) 30
MwoI GCNNNNNNNGC 3 cut(s) 34, 493, 512
NcoI CCATGG 1 cut(s) 490
NdeII GATC 3 cut(s) 136, 182, 355
NlaIII CATG 3 cut(s) 248, 445, 494
NlaIV GGNNCC 2 cut(s) 52, 161
PagI TCATGA 1 cut(s) 441
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PfeI GAWTC 2 cut(s) 217, 551
PkrI GCNGC 4 cut(s) 80, 175, 457, 460
PleI GAGTC 1 cut(s) 539
PpsI GAGTC 1 cut(s) 539
Psp1406I AACGTT 1 cut(s) 113
Psp6I CCWGG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 2 cut(s) 52, 161
PsuI RGATCY 1 cut(s) 182
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
SaqAI TTAA 2 cut(s) 117, 474
SatI GCNGC 4 cut(s) 79, 174, 456, 459
Sau3AI GATC 3 cut(s) 136, 182, 355
SchI GAGTC 1 cut(s) 539
ScrFI CCNGG 1 cut(s) 226
SduI GDGCHC 1 cut(s) 489
SetI ASST 8 cut(s) 21, 60, 116, 124, 158, 178, 364, 450
SfaNI GCATC 2 cut(s) 310, 349
Sse9I AATT 1 cut(s) 392
SsiI CCGC 1 cut(s) 233
StyD4I CCNGG 1 cut(s) 224
StyI CCWWGG 2 cut(s) 409, 490
TaiI ACGT 2 cut(s) 60, 116
TaqI TCGA 1 cut(s) 519
TasI AATT 1 cut(s) 392
TfiI GAWTC 2 cut(s) 217, 551
Tru1I TTAA 2 cut(s) 117, 474
Tru9I TTAA 2 cut(s) 117, 474
TseI GCWGC 4 cut(s) 78, 173, 455, 458
TspDTI ATGAA 3 cut(s) 385, 430, 458
TspGWI ACGGA 1 cut(s) 315
XapI RAATTY 1 cut(s) 392
XmiI GTMKAC 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.