FvH4_1g13870

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0001583
Physical Location & Seq
Forward (+)
7626388 .. 7629057
2670 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g13870.t8

Sequence Viewer

Length: 579 bp
ATGGCTCTTTTCGGATCCGGCATAGCCAGTGAGGTCGGGCTTCGGCTGCTCCTTTGTCCTCTGGGCTCTAACGTTGTGATTCGAACAGCGTGTTGTTCTGTGGGGATTGTTGTGCCGGTGTACTGTACGTGCAAGGCAATTGAGAGGAAAGATGATCCTGCGCAACAAAAGTGGCTTCTTTATTGGGCAGCTTATGGATCTTTCAGCCTTGTGGAGATATTTTCGGATAGGCTTATATCTTGGTGCCCATATTACTATCACATGAAGTTCGCCTTTCTTGTTTGGCTCCAACTTCCATCTGCTGATGGGGCAAAGCAGTTGTACATGAACCACCTACGCCCGTTCTTTTTGAAGAACCAAACGAAAATTGATCGAATTTTGGGCCTTACATATGGTGAATTGCTCAAACTCATTAGTGCACACCAAGGAGAGATCCAGTATGCTAGGGCTATGTTCCTGAAAGTTTTTGGTTCAGATCAAATGCCGAGGGGCAGGGCTAATACAGATCTGCCACAAGACAATGCAATTGAAGGGGAGCCTAGACCAACCACAGAGTCTGACTCTGGTCTAGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

193

Amino Acids

21.61

Weight (kDa)

6.81

Isoelectric Point (pI)

41.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 39 - 100 1.1e-21 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 162
AccB1I GGYRCC 1 cut(s) 243
AclI AACGTT 1 cut(s) 72
AclWI GGATC 5 cut(s) 9, 22, 149, 205, 427
AcsI RAATTY 1 cut(s) 375
AfaI GTAC 3 cut(s) 122, 127, 323
AgsI TTSAA 2 cut(s) 352, 530
AluBI AGCT 1 cut(s) 191
AluI AGCT 1 cut(s) 191
Alw21I GWGCWC 1 cut(s) 421
Alw44I GTGCAC 1 cut(s) 417
AlwI GGATC 5 cut(s) 9, 22, 149, 205, 427
AlwNI CAGNNNCTG 1 cut(s) 557
AoxI GGCC 1 cut(s) 382
ApaLI GTGCAC 1 cut(s) 417
ApeKI GCWGC 2 cut(s) 46, 188
ApoI RAATTY 1 cut(s) 375
AspLEI GCGC 1 cut(s) 163
AspS9I GGNCC 1 cut(s) 382
AsuHPI GGTGA 1 cut(s) 407
AsuII TTCGAA 1 cut(s) 82
BaeGI GKGCMC 2 cut(s) 248, 421
BamHI GGATCC 1 cut(s) 14
BanI GGYRCC 1 cut(s) 243
BanII GRGCYC 1 cut(s) 68
Bbv12I GWGCWC 1 cut(s) 421
BbvI GCAGC 2 cut(s) 33, 200
BccI CCATC 2 cut(s) 299, 304
BfaI CTAG 3 cut(s) 444, 540, 569
BglII AGATCT 1 cut(s) 505
BisI GCNGC 2 cut(s) 47, 189
BlsI GCNGC 2 cut(s) 48, 190
BmgT120I GGNCC 1 cut(s) 382
BmiI GGNNCC 4 cut(s) 16, 245, 287, 537
BoxI GACNNNNGTC 1 cut(s) 564
BplI GAGNNNNNCTC 2 cut(s) 545, 577
Bpu14I TTCGAA 1 cut(s) 82
BsaAI YACGTR 1 cut(s) 129
BsaJI CCNNGG 2 cut(s) 424, 485
Bse118I RCCGGY 1 cut(s) 115
Bse1I ACTGG 2 cut(s) 27, 436
BseDI CCNNGG 2 cut(s) 424, 485
BseNI ACTGG 2 cut(s) 27, 436
BseSI GKGCMC 2 cut(s) 248, 421
BseXI GCAGC 2 cut(s) 33, 200
BshFI GGCC 1 cut(s) 384
BshNI GGYRCC 1 cut(s) 243
BsiHKAI GWGCWC 1 cut(s) 421
BsiSI CCGG 2 cut(s) 18, 116
BsnI GGCC 1 cut(s) 384
Bsp119I TTCGAA 1 cut(s) 82
Bsp1286I GDGCHC 3 cut(s) 68, 248, 421
Bsp1407I TGTACA 1 cut(s) 321
Bsp143I GATC 7 cut(s) 14, 154, 197, 370, 432, 475, 505
BspANI GGCC 1 cut(s) 384
BspLI GGNNCC 4 cut(s) 16, 245, 287, 537
BspPI GGATC 5 cut(s) 9, 22, 149, 205, 427
BspT104I TTCGAA 1 cut(s) 82
BspT107I GGYRCC 1 cut(s) 243
BsrFI RCCGGY 1 cut(s) 115
BsrGI TGTACA 1 cut(s) 321
BsrI ACTGG 2 cut(s) 27, 436
BssAI RCCGGY 1 cut(s) 115
BssECI CCNNGG 2 cut(s) 424, 485
BssMI GATC 7 cut(s) 14, 154, 197, 370, 432, 475, 505
BssT1I CCWWGG 1 cut(s) 424
Bst4CI ACNGT 1 cut(s) 125
BstAUI TGTACA 1 cut(s) 321
BstBAI YACGTR 1 cut(s) 129
BstBI TTCGAA 1 cut(s) 82
BstHHI GCGC 1 cut(s) 163
BstKTI GATC 7 cut(s) 17, 157, 200, 373, 435, 478, 508
BstMBI GATC 7 cut(s) 14, 154, 197, 370, 432, 475, 505
BstMWI GCNNNNNNNGC 2 cut(s) 46, 308
BstPAI GACNNNNGTC 1 cut(s) 564
BstSLI GKGCMC 2 cut(s) 248, 421
BstV1I GCAGC 2 cut(s) 33, 200
BstX2I RGATCY 4 cut(s) 14, 197, 432, 505
BstYI RGATCY 4 cut(s) 14, 197, 432, 505
BsuRI GGCC 1 cut(s) 384
BtsIMutI CAGTG 1 cut(s) 34
CaiI CAGNNNCTG 1 cut(s) 557
CfoI GCGC 1 cut(s) 163
Cfr10I RCCGGY 1 cut(s) 115
Cfr13I GGNCC 1 cut(s) 382
Csp6I GTAC 3 cut(s) 121, 126, 322
CspCI CAANNNNNGTGG 2 cut(s) 152, 187
CviAII CATG 2 cut(s) 262, 325
CviQI GTAC 3 cut(s) 121, 126, 322
DpnI GATC 7 cut(s) 16, 156, 199, 372, 434, 477, 507
DpnII GATC 7 cut(s) 14, 154, 197, 370, 432, 475, 505
Eco130I CCWWGG 1 cut(s) 424
Eco24I GRGCYC 1 cut(s) 68
EcoT14I CCWWGG 1 cut(s) 424
EcoT38I GRGCYC 1 cut(s) 68
ErhI CCWWGG 1 cut(s) 424
FaeI CATG 2 cut(s) 265, 328
FalI AAGNNNNNCTT 2 cut(s) 257, 289
FatI CATG 2 cut(s) 261, 324
FauNDI CATATG 1 cut(s) 391
Fnu4HI GCNGC 2 cut(s) 47, 189
FriOI GRGCYC 1 cut(s) 68
Fsp4HI GCNGC 2 cut(s) 47, 189
FspBI CTAG 3 cut(s) 444, 540, 569
FspI TGCGCA 1 cut(s) 162
GlaI GCGC 1 cut(s) 162
GluI GCNGC 2 cut(s) 47, 189
HaeIII GGCC 1 cut(s) 384
HapII CCGG 2 cut(s) 18, 116
HhaI GCGC 1 cut(s) 163
Hin1II CATG 2 cut(s) 265, 328
Hin6I GCGC 1 cut(s) 161
HinP1I GCGC 1 cut(s) 161
HinfI GANTC 3 cut(s) 79, 554, 560
HpaII CCGG 2 cut(s) 18, 116
HphI GGTGA 1 cut(s) 407
Hpy166II GTNNAC 2 cut(s) 121, 419
Hpy188I TCNGA 4 cut(s) 14, 226, 475, 559
Hpy188III TCNNGA 2 cut(s) 457, 569
Hpy8I GTNNAC 2 cut(s) 121, 419
HpyAV CCTTC 1 cut(s) 524
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4IV ACGT 2 cut(s) 72, 128
HpyCH4V TGCA 3 cut(s) 132, 419, 524
HpyF10VI GCNNNNNNNGC 2 cut(s) 46, 308
HpySE526I ACGT 2 cut(s) 72, 128
Hsp92II CATG 2 cut(s) 265, 328
HspAI GCGC 1 cut(s) 161
Kzo9I GATC 7 cut(s) 14, 154, 197, 370, 432, 475, 505
LmnI GCTCC 3 cut(s) 54, 291, 535
LpnPI CCDG 9 cut(s) 31, 40, 47, 129, 171, 449, 470, 478, 549
Lsp1109I GCAGC 2 cut(s) 33, 200
MaeI CTAG 3 cut(s) 444, 540, 569
MaeII ACGT 2 cut(s) 72, 128
MalI GATC 7 cut(s) 16, 156, 199, 372, 434, 477, 507
MboI GATC 7 cut(s) 14, 154, 197, 370, 432, 475, 505
MboII GAAGA 1 cut(s) 364
MfeI CAATTG 2 cut(s) 138, 525
MflI RGATCY 4 cut(s) 14, 197, 432, 505
MhlI GDGCHC 3 cut(s) 68, 248, 421
MluCI AATT 5 cut(s) 138, 366, 375, 398, 525
MlyI GAGTC 2 cut(s) 554, 563
MmeI TCCRAC 1 cut(s) 313
MnlI CCTC 4 cut(s) 25, 69, 138, 480
MspI CCGG 2 cut(s) 18, 116
MunI CAATTG 2 cut(s) 138, 525
MwoI GCNNNNNNNGC 2 cut(s) 46, 308
NdeI CATATG 1 cut(s) 391
NdeII GATC 7 cut(s) 14, 154, 197, 370, 432, 475, 505
NlaIII CATG 2 cut(s) 265, 328
NlaIV GGNNCC 4 cut(s) 16, 245, 287, 537
NmeAIII GCCGAG 1 cut(s) 510
NsbI TGCGCA 1 cut(s) 162
NspV TTCGAA 1 cut(s) 82
PfeI GAWTC 1 cut(s) 79
PkrI GCNGC 2 cut(s) 48, 190
PleI GAGTC 2 cut(s) 554, 562
PpsI GAGTC 2 cut(s) 554, 562
Ppu21I YACGTR 1 cut(s) 129
PshAI GACNNNNGTC 1 cut(s) 564
Psp1406I AACGTT 1 cut(s) 72
PspN4I GGNNCC 4 cut(s) 16, 245, 287, 537
PspPI GGNCC 1 cut(s) 382
PstNI CAGNNNCTG 1 cut(s) 557
PsuI RGATCY 4 cut(s) 14, 197, 432, 505
RsaI GTAC 3 cut(s) 122, 127, 323
RsaNI GTAC 3 cut(s) 121, 126, 322
SatI GCNGC 2 cut(s) 47, 189
Sau3AI GATC 7 cut(s) 14, 154, 197, 370, 432, 475, 505
Sau96I GGNCC 1 cut(s) 382
SchI GAGTC 2 cut(s) 554, 563
SduI GDGCHC 3 cut(s) 68, 248, 421
SetI ASST 5 cut(s) 36, 75, 131, 193, 336
SfuI TTCGAA 1 cut(s) 82
Sse9I AATT 5 cut(s) 138, 366, 375, 398, 525
SspMI CTAG 3 cut(s) 444, 540, 569
StyI CCWWGG 1 cut(s) 424
TaaI ACNGT 1 cut(s) 125
TaiI ACGT 2 cut(s) 75, 131
TaqI TCGA 2 cut(s) 82, 373
TasI AATT 5 cut(s) 138, 366, 375, 398, 525
TatI WGTACW 2 cut(s) 120, 321
TfiI GAWTC 1 cut(s) 79
TscAI CASTG 1 cut(s) 34
TseI GCWGC 2 cut(s) 46, 188
TspDTI ATGAA 2 cut(s) 278, 341
TspRI CASTG 1 cut(s) 34
VneI GTGCAC 1 cut(s) 417
XapI RAATTY 1 cut(s) 375
XbaI TCTAGA 1 cut(s) 568
XspI CTAG 3 cut(s) 444, 540, 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.