Prupe.7G150800_v2.0.a1

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0001583
Physical Location & Seq
Reverse (-)
16210126 .. 16213639
3514 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G150800.1

Sequence Viewer

Length: 567 bp
ATGGCGCTTCTCGGATCCAACATAGCCAGCGAGGTAGGTTTACGATTGCTCCTTTGCCCTCTCGGTTCAAACATTGTTCTTCGAACAGCATGTTGTTCTGTGGGGATTGGTATACCAGTATACTGTACATGCAAGGCAATTGAGAGGAAAGATCGTAATGCACAAGAAAAGTGGCTTTTATATTGGGCAGCTTATGGATCTTTCAGCCTTGTGGAAATATTTTCAGACAAGCTTATTTCTTGGTGCCCAATGTACTATCATTTGAAGTTTGCCTTTCTTGTTTGGCTCCAACTTCCATCTGTCGATGGAGCAAAGCAGTTGTACACGAACCATCTACGTCCATTCTTTTTGAAGCATCAAACTAGGGTTGATCGATTTCTGGGACTCACATATGGTGAATTGCACAAACTCATTAGTGCACACCAAGCGGAGATCGAGTATGCTAGGGCTGTGGTGATGAAAATTTTGGGTTCAGACCCGAGGCCTAATTCAGACGTACCACGACAGAATGCAATAGAAGGCCAGGCAAGAATAGCCCCAGTTTCGGAGTCTGATCATGAGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

189

Amino Acids

21.23

Weight (kDa)

8.2

Isoelectric Point (pI)

46.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 243
AccI GTMKAC 2 cut(s) 112, 120
AciI CCGC 1 cut(s) 428
AclWI GGATC 3 cut(s) 9, 22, 205
AcsI RAATTY 1 cut(s) 462
AfaI GTAC 4 cut(s) 127, 254, 323, 498
AfiI CCNNNNNNNGG 1 cut(s) 544
AgsI TTSAA 3 cut(s) 69, 265, 352
AjnI CCWGG 1 cut(s) 522
AluBI AGCT 2 cut(s) 191, 232
AluI AGCT 2 cut(s) 191, 232
Alw21I GWGCWC 1 cut(s) 421
Alw44I GTGCAC 1 cut(s) 417
AlwI GGATC 3 cut(s) 9, 22, 205
Ama87I CYCGRG 1 cut(s) 478
AoxI GGCC 2 cut(s) 482, 520
ApaLI GTGCAC 1 cut(s) 417
ApeKI GCWGC 1 cut(s) 188
ApoI RAATTY 1 cut(s) 462
AspLEI GCGC 1 cut(s) 7
AsuHPI GGTGA 2 cut(s) 407, 466
AsuII TTCGAA 1 cut(s) 82
AvaI CYCGRG 1 cut(s) 478
BaeGI GKGCMC 2 cut(s) 248, 421
BamHI GGATCC 1 cut(s) 14
BanI GGYRCC 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 421
BbvI GCAGC 1 cut(s) 200
BccI CCATC 3 cut(s) 299, 304, 339
BciT130I CCWGG 1 cut(s) 524
BclI TGATCA 1 cut(s) 553
BfaI CTAG 2 cut(s) 363, 444
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
Bme1390I CCNGG 1 cut(s) 524
BmeT110I CYCGRG 1 cut(s) 478
BmiI GGNNCC 3 cut(s) 16, 245, 287
BmrFI CCNGG 1 cut(s) 524
BmrI ACTGGG 1 cut(s) 533
BmsI GCATC 1 cut(s) 364
BmuI ACTGGG 1 cut(s) 533
Bpu14I TTCGAA 1 cut(s) 82
Bsa29I ATCGAT 1 cut(s) 373
BsaJI CCNNGG 1 cut(s) 479
BsaXI ACNNNNNCTCC 4 cut(s) 33, 63, 422, 452
Bsc4I CCNNNNNNNGG 1 cut(s) 544
Bse1I ACTGG 2 cut(s) 116, 539
BseBI CCWGG 1 cut(s) 524
BseCI ATCGAT 1 cut(s) 373
BseDI CCNNGG 1 cut(s) 479
BseLI CCNNNNNNNGG 1 cut(s) 544
BseNI ACTGG 2 cut(s) 116, 539
BseSI GKGCMC 2 cut(s) 248, 421
BseXI GCAGC 1 cut(s) 200
BshFI GGCC 2 cut(s) 484, 522
BshNI GGYRCC 1 cut(s) 243
BshVI ATCGAT 1 cut(s) 373
BsiHKAI GWGCWC 1 cut(s) 421
BsiHKCI CYCGRG 1 cut(s) 478
BslFI GGGAC 1 cut(s) 396
BslI CCNNNNNNNGG 1 cut(s) 544
BsmFI GGGAC 1 cut(s) 396
BsmI GAATGC 1 cut(s) 514
BsnI GGCC 2 cut(s) 484, 522
BsoBI CYCGRG 1 cut(s) 478
Bsp119I TTCGAA 1 cut(s) 82
Bsp1286I GDGCHC 2 cut(s) 248, 421
Bsp1407I TGTACA 2 cut(s) 125, 321
Bsp143I GATC 6 cut(s) 14, 151, 197, 370, 432, 553
BspACI CCGC 1 cut(s) 428
BspANI GGCC 2 cut(s) 484, 522
BspDI ATCGAT 1 cut(s) 373
BspHI TCATGA 1 cut(s) 556
BspLI GGNNCC 3 cut(s) 16, 245, 287
BspPI GGATC 3 cut(s) 9, 22, 205
BspT104I TTCGAA 1 cut(s) 82
BspT107I GGYRCC 1 cut(s) 243
BsrGI TGTACA 2 cut(s) 125, 321
BsrI ACTGG 2 cut(s) 116, 539
BssECI CCNNGG 1 cut(s) 479
BssMI GATC 6 cut(s) 14, 151, 197, 370, 432, 553
BssNAI GTATAC 2 cut(s) 113, 121
Bst1107I GTATAC 2 cut(s) 113, 121
Bst2UI CCWGG 1 cut(s) 524
Bst4CI ACNGT 1 cut(s) 125
BstAUI TGTACA 2 cut(s) 125, 321
BstBI TTCGAA 1 cut(s) 82
BstC8I GCNNGC 1 cut(s) 28
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 6 cut(s) 17, 154, 200, 373, 435, 556
BstMBI GATC 6 cut(s) 14, 151, 197, 370, 432, 553
BstMWI GCNNNNNNNGC 2 cut(s) 425, 533
BstNI CCWGG 1 cut(s) 524
BstNSI RCATGY 2 cut(s) 93, 132
BstSCI CCNGG 1 cut(s) 522
BstSLI GKGCMC 2 cut(s) 248, 421
BstV1I GCAGC 1 cut(s) 200
BstX2I RGATCY 2 cut(s) 14, 197
BstYI RGATCY 2 cut(s) 14, 197
BstZ17I GTATAC 2 cut(s) 113, 121
Bsu15I ATCGAT 1 cut(s) 373
BsuRI GGCC 2 cut(s) 484, 522
BsuTUI ATCGAT 1 cut(s) 373
Cac8I GCNNGC 1 cut(s) 28
CciI TCATGA 1 cut(s) 556
CfoI GCGC 1 cut(s) 7
ClaI ATCGAT 1 cut(s) 373
Csp6I GTAC 4 cut(s) 126, 253, 322, 497
CspCI CAANNNNNGTGG 2 cut(s) 152, 187
CviAII CATG 3 cut(s) 90, 129, 557
CviQI GTAC 4 cut(s) 126, 253, 322, 497
DpnI GATC 6 cut(s) 16, 153, 199, 372, 434, 555
DpnII GATC 6 cut(s) 14, 151, 197, 370, 432, 553
Eco147I AGGCCT 1 cut(s) 484
Eco88I CYCGRG 1 cut(s) 478
EcoRII CCWGG 1 cut(s) 522
FaeI CATG 3 cut(s) 93, 132, 560
FalI AAGNNNNNCTT 2 cut(s) 257, 289
FaqI GGGAC 1 cut(s) 396
FatI CATG 3 cut(s) 89, 128, 556
FauNDI CATATG 1 cut(s) 391
FbaI TGATCA 1 cut(s) 553
FblI GTMKAC 2 cut(s) 112, 120
Fnu4HI GCNGC 1 cut(s) 189
Fsp4HI GCNGC 1 cut(s) 189
FspBI CTAG 2 cut(s) 363, 444
GlaI GCGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 189
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 484, 522
HhaI GCGC 1 cut(s) 7
Hin1II CATG 3 cut(s) 93, 132, 560
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HindIII AAGCTT 1 cut(s) 230
HinfI GANTC 2 cut(s) 384, 548
HphI GGTGA 2 cut(s) 407, 466
Hpy166II GTNNAC 5 cut(s) 41, 113, 121, 324, 419
Hpy188I TCNGA 6 cut(s) 14, 226, 475, 493, 547, 553
Hpy188III TCNNGA 1 cut(s) 557
Hpy8I GTNNAC 5 cut(s) 41, 113, 121, 324, 419
HpyAV CCTTC 1 cut(s) 512
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4IV ACGT 2 cut(s) 337, 495
HpyCH4V TGCA 5 cut(s) 132, 161, 403, 419, 512
HpyF10VI GCNNNNNNNGC 2 cut(s) 425, 533
HpySE526I ACGT 2 cut(s) 337, 495
Hsp92II CATG 3 cut(s) 93, 132, 560
HspAI GCGC 1 cut(s) 5
Ksp22I TGATCA 1 cut(s) 553
Kzo9I GATC 6 cut(s) 14, 151, 197, 370, 432, 553
LmnI GCTCC 3 cut(s) 54, 291, 308
LpnPI CCDG 6 cut(s) 40, 129, 365, 509, 536, 552
Lsp1109I GCAGC 1 cut(s) 200
LweI GCATC 1 cut(s) 364
MaeI CTAG 2 cut(s) 363, 444
MaeII ACGT 2 cut(s) 337, 495
MalI GATC 6 cut(s) 16, 153, 199, 372, 434, 555
MboI GATC 6 cut(s) 14, 151, 197, 370, 432, 553
MboII GAAGA 1 cut(s) 71
MfeI CAATTG 1 cut(s) 138
MflI RGATCY 2 cut(s) 14, 197
MhlI GDGCHC 2 cut(s) 248, 421
MluCI AATT 4 cut(s) 138, 398, 462, 487
MlyI GAGTC 2 cut(s) 378, 557
MmeI TCCRAC 2 cut(s) 42, 313
MnlI CCTC 5 cut(s) 25, 69, 138, 474, 553
MspR9I CCNGG 1 cut(s) 524
MunI CAATTG 1 cut(s) 138
Mva1269I GAATGC 1 cut(s) 514
MvaI CCWGG 1 cut(s) 524
MwoI GCNNNNNNNGC 2 cut(s) 425, 533
NdeI CATATG 1 cut(s) 391
NdeII GATC 6 cut(s) 14, 151, 197, 370, 432, 553
NlaIII CATG 3 cut(s) 93, 132, 560
NlaIV GGNNCC 3 cut(s) 16, 245, 287
NspI RCATGY 2 cut(s) 93, 132
NspV TTCGAA 1 cut(s) 82
PagI TCATGA 1 cut(s) 556
PceI AGGCCT 1 cut(s) 484
PctI GAATGC 1 cut(s) 514
PkrI GCNGC 1 cut(s) 190
PleI GAGTC 2 cut(s) 378, 556
PpsI GAGTC 2 cut(s) 378, 556
Psp6I CCWGG 1 cut(s) 522
PspGI CCWGG 1 cut(s) 522
PspN4I GGNNCC 3 cut(s) 16, 245, 287
PsuI RGATCY 2 cut(s) 14, 197
RsaI GTAC 4 cut(s) 127, 254, 323, 498
RsaNI GTAC 4 cut(s) 126, 253, 322, 497
SatI GCNGC 1 cut(s) 189
Sau3AI GATC 6 cut(s) 14, 151, 197, 370, 432, 553
SchI GAGTC 2 cut(s) 378, 557
ScrFI CCNGG 1 cut(s) 524
SduI GDGCHC 2 cut(s) 248, 421
SetI ASST 6 cut(s) 36, 40, 193, 234, 340, 498
SfaNI GCATC 1 cut(s) 364
SfuI TTCGAA 1 cut(s) 82
Sse9I AATT 4 cut(s) 138, 398, 462, 487
SseBI AGGCCT 1 cut(s) 484
SsiI CCGC 1 cut(s) 428
SspI AATATT 1 cut(s) 219
SspMI CTAG 2 cut(s) 363, 444
StuI AGGCCT 1 cut(s) 484
StyD4I CCNGG 1 cut(s) 522
TaaI ACNGT 1 cut(s) 125
TaiI ACGT 2 cut(s) 340, 498
TaqI TCGA 4 cut(s) 82, 303, 373, 435
TasI AATT 4 cut(s) 138, 398, 462, 487
TatI WGTACW 3 cut(s) 125, 252, 321
TseI GCWGC 1 cut(s) 188
TspDTI ATGAA 1 cut(s) 473
VneI GTGCAC 1 cut(s) 417
XapI RAATTY 1 cut(s) 462
XceI RCATGY 2 cut(s) 93, 132
XmiI GTMKAC 2 cut(s) 112, 120
XspI CTAG 2 cut(s) 363, 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.