AT4G36720

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0001583
Physical Location & Seq
Forward (+)
17307709 .. 17309867
2159 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G36720.1

Sequence Viewer

Length: 603 bp
ATGAGCGGGTTTGCTTCACAGATTCCATCCATGGCGCTTCTTGGATCTGGACTCACCGGCGAGGTTGGGTTGCGTGTATTGTTCTCTCCACTTAGTTCCAATATCGTACTTCGTACAGCATGCTGCTCCATTGGCATCGGTTTGCCTGTGTACTCTACCTTCAAGGCAATTGAGAGTGGAGATGAGAATGAACAACAAAAGATGCTTATTTACTGGGCAGCTTATGGTTCTTTCAGCCTTGTTGAAGTGTTCACGGACAAGATCATTTCCTGGTTCCCGCTGTACTATCATGTGAAGTTTGCGTTCCTCGTCTGGCTTCAACTCCCAACTGTTGAGGGATCAAAACAGATATACAACAACCAGATCCGTCCTTTCCTCTTACGACACCAAGCTAGAGTGGACCAACTTGTGGATGGTGTATATGGGGAAATGGTGAAGGTCGTTAGGTCACACCAAGGAGAAATACGGTTTGTCCGAGCAATGATTGCCAAAATCTTGGGATCAGTCAACGAGGATGCACCACGACTAGGAGAAATAGCAAATGGTAGCCCCGTTTCAGAAACAAACTCGGATTCAGAATCCGATTCCAATCACGAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

200

Amino Acids

22.15

Weight (kDa)

5.38

Isoelectric Point (pI)

47.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 49 - 125 4.5e-28 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 409
AccBSI CCGCTC 1 cut(s) 6
AciI CCGC 2 cut(s) 6, 278
AclWI GGATC 4 cut(s) 52, 346, 358, 508
AfaI GTAC 4 cut(s) 108, 115, 152, 284
AfiI CCNNNNNNNGG 2 cut(s) 409, 527
AgsI TTSAA 3 cut(s) 163, 245, 320
AjnI CCWGG 1 cut(s) 269
AluBI AGCT 2 cut(s) 221, 392
AluI AGCT 2 cut(s) 221, 392
AlwI GGATC 4 cut(s) 52, 346, 358, 508
ApeKI GCWGC 2 cut(s) 123, 218
AspLEI GCGC 1 cut(s) 37
AspS9I GGNCC 1 cut(s) 400
AsuHPI GGTGA 2 cut(s) 46, 445
AvaII GGWCC 1 cut(s) 400
BarI GAAGNNNNNNTAC 2 cut(s) 143, 175
BbvI GCAGC 2 cut(s) 110, 230
BccI CCATC 2 cut(s) 34, 407
BciT130I CCWGG 1 cut(s) 271
BfaI CTAG 2 cut(s) 393, 527
BfoI RGCGCY 1 cut(s) 38
BisI GCNGC 2 cut(s) 124, 219
BlsI GCNGC 2 cut(s) 125, 220
Bme1390I CCNGG 1 cut(s) 271
Bme18I GGWCC 1 cut(s) 400
BmgT120I GGNCC 1 cut(s) 400
BmiI GGNNCC 1 cut(s) 275
BmrFI CCNGG 1 cut(s) 271
BmrI ACTGGG 1 cut(s) 223
BmsI GCATC 3 cut(s) 144, 192, 505
BmuI ACTGGG 1 cut(s) 223
BsaBI GATNNNNATC 1 cut(s) 588
BsaJI CCNNGG 2 cut(s) 30, 454
Bsc4I CCNNNNNNNGG 2 cut(s) 409, 527
Bse118I RCCGGY 1 cut(s) 56
Bse1I ACTGG 1 cut(s) 218
Bse3DI GCAATG 1 cut(s) 486
Bse8I GATNNNNATC 1 cut(s) 588
BseBI CCWGG 1 cut(s) 271
BseDI CCNNGG 2 cut(s) 30, 454
BseGI GGATG 3 cut(s) 26, 418, 520
BseJI GATNNNNATC 1 cut(s) 588
BseLI CCNNNNNNNGG 2 cut(s) 409, 527
BseMI GCAATG 1 cut(s) 486
BseNI ACTGG 1 cut(s) 218
BseXI GCAGC 2 cut(s) 110, 230
BsiSI CCGG 1 cut(s) 57
BslI CCNNNNNNNGG 2 cut(s) 409, 527
Bsp143I GATC 5 cut(s) 44, 261, 338, 363, 500
Bsp19I CCATGG 1 cut(s) 30
BspACI CCGC 2 cut(s) 6, 278
BspLI GGNNCC 1 cut(s) 275
BspPI GGATC 4 cut(s) 52, 346, 358, 508
BsrBI CCGCTC 1 cut(s) 6
BsrDI GCAATG 1 cut(s) 486
BsrFI RCCGGY 1 cut(s) 56
BsrI ACTGG 1 cut(s) 218
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 2 cut(s) 30, 454
BssMI GATC 5 cut(s) 44, 261, 338, 363, 500
BssT1I CCWWGG 2 cut(s) 30, 454
Bst2UI CCWGG 1 cut(s) 271
Bst4CI ACNGT 2 cut(s) 331, 468
BstAPI GCANNNNNTGC 1 cut(s) 485
BstC8I GCNNGC 1 cut(s) 121
BstDEI CTNAG 1 cut(s) 92
BstDSI CCRYGG 1 cut(s) 30
BstF5I GGATG 3 cut(s) 26, 418, 520
BstH2I RGCGCY 1 cut(s) 38
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 5 cut(s) 47, 264, 341, 366, 503
BstMBI GATC 5 cut(s) 44, 261, 338, 363, 500
BstMWI GCNNNNNNNGC 2 cut(s) 132, 485
BstNI CCWGG 1 cut(s) 271
BstNSI RCATGY 1 cut(s) 123
BstSCI CCNGG 1 cut(s) 269
BstV1I GCAGC 2 cut(s) 110, 230
BstX2I RGATCY 2 cut(s) 44, 363
BstXI CCANNNNNNTGG 1 cut(s) 496
BstYI RGATCY 2 cut(s) 44, 363
BtgI CCRYGG 1 cut(s) 30
BtsCI GGATG 3 cut(s) 26, 418, 520
Cac8I GCNNGC 1 cut(s) 121
CfoI GCGC 1 cut(s) 37
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 1 cut(s) 400
Csp6I GTAC 4 cut(s) 107, 114, 151, 283
CviAII CATG 3 cut(s) 31, 120, 290
CviJI RGCY 5 cut(s) 221, 237, 316, 392, 549
CviKI_1 RGCY 5 cut(s) 221, 237, 316, 392, 549
CviQI GTAC 4 cut(s) 107, 114, 151, 283
DdeI CTNAG 1 cut(s) 92
DpnI GATC 5 cut(s) 46, 263, 340, 365, 502
DpnII GATC 5 cut(s) 44, 261, 338, 363, 500
Eco130I CCWWGG 2 cut(s) 30, 454
Eco47I GGWCC 1 cut(s) 400
EcoRII CCWGG 1 cut(s) 269
EcoT14I CCWWGG 2 cut(s) 30, 454
ErhI CCWWGG 2 cut(s) 30, 454
FaeI CATG 3 cut(s) 34, 123, 293
FaiI YATR 7 cut(s) 32, 121, 225, 291, 352, 421, 423
FatI CATG 3 cut(s) 30, 119, 289
FauI CCCGC 1 cut(s) 285
Fnu4HI GCNGC 2 cut(s) 124, 219
FokI GGATG 3 cut(s) 13, 425, 527
Fsp4HI GCNGC 2 cut(s) 124, 219
FspBI CTAG 2 cut(s) 393, 527
GlaI GCGC 1 cut(s) 36
GluI GCNGC 2 cut(s) 124, 219
HaeII RGCGCY 1 cut(s) 38
HapII CCGG 1 cut(s) 57
HhaI GCGC 1 cut(s) 37
Hin1II CATG 3 cut(s) 34, 123, 293
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HincII GTYRAC 1 cut(s) 508
HindII GTYRAC 1 cut(s) 508
HinfI GANTC 5 cut(s) 22, 51, 572, 578, 584
HpaII CCGG 1 cut(s) 57
HphI GGTGA 2 cut(s) 46, 445
Hpy166II GTNNAC 4 cut(s) 151, 252, 400, 508
Hpy188I TCNGA 5 cut(s) 476, 559, 571, 577, 583
Hpy188III TCNNGA 2 cut(s) 48, 593
Hpy8I GTNNAC 4 cut(s) 151, 252, 400, 508
HpyAV CCTTC 2 cut(s) 169, 430
HpyCH4III ACNGT 2 cut(s) 331, 468
HpyCH4V TGCA 1 cut(s) 518
HpyF10VI GCNNNNNNNGC 2 cut(s) 132, 485
HpyF3I CTNAG 1 cut(s) 92
Hsp92II CATG 3 cut(s) 34, 123, 293
HspAI GCGC 1 cut(s) 35
Kzo9I GATC 5 cut(s) 44, 261, 338, 363, 500
LmnI GCTCC 1 cut(s) 131
LpnPI CCDG 8 cut(s) 33, 70, 159, 199, 256, 283, 298, 374
Lsp1109I GCAGC 2 cut(s) 110, 230
LweI GCATC 3 cut(s) 144, 192, 505
MaeI CTAG 2 cut(s) 393, 527
MaeIII GTNAC 1 cut(s) 447
MalI GATC 5 cut(s) 46, 263, 340, 365, 502
MbiI CCGCTC 1 cut(s) 6
MboI GATC 5 cut(s) 44, 261, 338, 363, 500
MfeI CAATTG 1 cut(s) 168
MflI RGATCY 2 cut(s) 44, 363
MluCI AATT 1 cut(s) 168
MlyI GAGTC 1 cut(s) 45
MnlI CCTC 5 cut(s) 55, 317, 328, 386, 505
MspA1I CMGCKG 1 cut(s) 280
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 1 cut(s) 271
MunI CAATTG 1 cut(s) 168
MvaI CCWGG 1 cut(s) 271
MwoI GCNNNNNNNGC 2 cut(s) 132, 485
NcoI CCATGG 1 cut(s) 30
NdeII GATC 5 cut(s) 44, 261, 338, 363, 500
NlaIII CATG 3 cut(s) 34, 123, 293
NlaIV GGNNCC 1 cut(s) 275
NmuCI GTSAC 1 cut(s) 447
NspI RCATGY 1 cut(s) 123
PaeI GCATGC 1 cut(s) 123
PcsI WCGNNNNNNNCGW 1 cut(s) 472
PfeI GAWTC 4 cut(s) 22, 572, 578, 584
PflMI CCANNNNNTGG 1 cut(s) 409
PkrI GCNGC 2 cut(s) 125, 220
PleI GAGTC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 45
Psp6I CCWGG 1 cut(s) 269
PspGI CCWGG 1 cut(s) 269
PspN4I GGNNCC 1 cut(s) 275
PspPI GGNCC 1 cut(s) 400
PsuI RGATCY 2 cut(s) 44, 363
RsaI GTAC 4 cut(s) 108, 115, 152, 284
RsaNI GTAC 4 cut(s) 107, 114, 151, 283
SatI GCNGC 2 cut(s) 124, 219
Sau3AI GATC 5 cut(s) 44, 261, 338, 363, 500
Sau96I GGNCC 1 cut(s) 400
SchI GAGTC 1 cut(s) 45
ScrFI CCNGG 1 cut(s) 271
SetI ASST 6 cut(s) 66, 161, 223, 394, 441, 449
SfaNI GCATC 3 cut(s) 144, 192, 505
SgrAI CRCCGGYG 1 cut(s) 56
SinI GGWCC 1 cut(s) 400
SphI GCATGC 1 cut(s) 123
Sse9I AATT 1 cut(s) 168
SsiI CCGC 2 cut(s) 6, 278
SspMI CTAG 2 cut(s) 393, 527
StyD4I CCNGG 1 cut(s) 269
StyI CCWWGG 2 cut(s) 30, 454
TaaI ACNGT 2 cut(s) 331, 468
TasI AATT 1 cut(s) 168
TatI WGTACW 2 cut(s) 150, 282
TfiI GAWTC 4 cut(s) 22, 572, 578, 584
TseFI GTSAC 1 cut(s) 447
TseI GCWGC 2 cut(s) 123, 218
Tsp45I GTSAC 1 cut(s) 447
TspDTI ATGAA 1 cut(s) 204
TspGWI ACGGA 2 cut(s) 269, 356
Van91I CCANNNNNTGG 1 cut(s) 409
VpaK11BI GGWCC 1 cut(s) 400
XceI RCATGY 1 cut(s) 123
XcmI CCANNNNNNNNNTGG 1 cut(s) 410
XspI CTAG 2 cut(s) 393, 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.