Rh2DG153300

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001583
Physical Location & Seq
Forward (+)
12850211 .. 12852376
2166 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG153300.1

Sequence Viewer

Length: 504 bp
ATGGTAGAAGTTGAGGCTTTCTTTACAGTTGTTCTGTGGGGAGTATACTGTACATGCAAGGCAATTGAGAGGAAAGATGAAACTGCACAACAGAAGTGGCTTCTTTATTGGGCAGCTTATGGATCTTTCAGCCTTGTGGAAATATTTTCAGATAGGCTTATATCTTGGTGCCCATATTACTATCATATGAAGTTTGCCTTTCTTGTTTGGCTCCAACTTCCATCTGCTGATGGGGCGAAGCAGTTGTACATGAACCACCTACGCCCGTTCTTTTTGAGGCATCAAACTAAAGTTGATAGAATTTTGGGCCTTACGTATGCTGAATTGCTCAAACTCATTAGTGCACACCAAGGAGAGATCCACTATGTTAGGGCTATGTTCTTGAAAGTTTTTGGTTCAGATCAGCTGCCGATGGGCAGGGCTAATACAGATCTGCCACAGAACAATGCAATTGAAGGGCCGCCTAGAACAACCACAGAGTCTGACTCCGGTCTAGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

167

Amino Acids

19.35

Weight (kDa)

6.19

Isoelectric Point (pI)

44.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 15 - 90 3e-26 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 168
AccI GTMKAC 1 cut(s) 45
AciI CCGC 1 cut(s) 461
AclWI GGATC 2 cut(s) 130, 352
AcsI RAATTY 1 cut(s) 300
AfaI GTAC 2 cut(s) 52, 248
AgsI TTSAA 2 cut(s) 385, 455
AluBI AGCT 2 cut(s) 116, 406
AluI AGCT 2 cut(s) 116, 406
Alw21I GWGCWC 1 cut(s) 346
Alw44I GTGCAC 1 cut(s) 342
AlwI GGATC 2 cut(s) 130, 352
AlwNI CAGNNNCTG 1 cut(s) 482
AoxI GGCC 2 cut(s) 307, 458
ApaLI GTGCAC 1 cut(s) 342
ApeKI GCWGC 2 cut(s) 113, 406
ApoI RAATTY 1 cut(s) 300
AspS9I GGNCC 2 cut(s) 307, 458
BaeGI GKGCMC 2 cut(s) 173, 346
BanI GGYRCC 1 cut(s) 168
BarI GAAGNNNNNNTAC 2 cut(s) 230, 262
Bbv12I GWGCWC 1 cut(s) 346
BbvI GCAGC 2 cut(s) 125, 393
BccI CCATC 3 cut(s) 224, 229, 406
BfaI CTAG 2 cut(s) 465, 494
BglII AGATCT 1 cut(s) 430
BisI GCNGC 3 cut(s) 114, 407, 461
BlsI GCNGC 3 cut(s) 115, 408, 462
BmgT120I GGNCC 2 cut(s) 307, 458
BmiI GGNNCC 2 cut(s) 170, 212
BmsI GCATC 1 cut(s) 289
BoxI GACNNNNGTC 1 cut(s) 489
BplI GAGNNNNNCTC 2 cut(s) 470, 502
BsaAI YACGTR 1 cut(s) 315
BsaJI CCNNGG 1 cut(s) 349
BsaWI WCCGGW 1 cut(s) 488
BseDI CCNNGG 1 cut(s) 349
BseSI GKGCMC 2 cut(s) 173, 346
BseXI GCAGC 2 cut(s) 125, 393
BsgI GTGCAG 1 cut(s) 69
BshFI GGCC 2 cut(s) 309, 460
BshNI GGYRCC 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 346
BsiSI CCGG 1 cut(s) 489
BsnI GGCC 2 cut(s) 309, 460
Bsp1286I GDGCHC 2 cut(s) 173, 346
Bsp1407I TGTACA 2 cut(s) 50, 246
Bsp143I GATC 4 cut(s) 122, 357, 400, 430
BspACI CCGC 1 cut(s) 461
BspANI GGCC 2 cut(s) 309, 460
BspLI GGNNCC 2 cut(s) 170, 212
BspPI GGATC 2 cut(s) 130, 352
BspT107I GGYRCC 1 cut(s) 168
BsrGI TGTACA 2 cut(s) 50, 246
BssECI CCNNGG 1 cut(s) 349
BssMI GATC 4 cut(s) 122, 357, 400, 430
BssNAI GTATAC 1 cut(s) 46
BssT1I CCWWGG 1 cut(s) 349
Bst1107I GTATAC 1 cut(s) 46
Bst4CI ACNGT 2 cut(s) 28, 50
BstAUI TGTACA 2 cut(s) 50, 246
BstBAI YACGTR 1 cut(s) 315
BstKTI GATC 4 cut(s) 125, 360, 403, 433
BstMBI GATC 4 cut(s) 122, 357, 400, 430
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstNSI RCATGY 1 cut(s) 57
BstPAI GACNNNNGTC 1 cut(s) 489
BstSLI GKGCMC 2 cut(s) 173, 346
BstSNI TACGTA 1 cut(s) 315
BstV1I GCAGC 2 cut(s) 125, 393
BstX2I RGATCY 3 cut(s) 122, 357, 430
BstYI RGATCY 3 cut(s) 122, 357, 430
BstZ17I GTATAC 1 cut(s) 46
BsuRI GGCC 2 cut(s) 309, 460
CaiI CAGNNNCTG 1 cut(s) 482
Cfr13I GGNCC 2 cut(s) 307, 458
Csp6I GTAC 2 cut(s) 51, 247
CspCI CAANNNNNGTGG 2 cut(s) 77, 112
CviAII CATG 2 cut(s) 54, 250
CviQI GTAC 2 cut(s) 51, 247
DpnI GATC 4 cut(s) 124, 359, 402, 432
DpnII GATC 4 cut(s) 122, 357, 400, 430
Eco105I TACGTA 1 cut(s) 315
Eco130I CCWWGG 1 cut(s) 349
EcoT14I CCWWGG 1 cut(s) 349
ErhI CCWWGG 1 cut(s) 349
FaeI CATG 2 cut(s) 57, 253
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FatI CATG 2 cut(s) 53, 249
FauNDI CATATG 1 cut(s) 186
FblI GTMKAC 1 cut(s) 45
Fnu4HI GCNGC 3 cut(s) 114, 407, 461
Fsp4HI GCNGC 3 cut(s) 114, 407, 461
FspBI CTAG 2 cut(s) 465, 494
GluI GCNGC 3 cut(s) 114, 407, 461
HaeIII GGCC 2 cut(s) 309, 460
HapII CCGG 1 cut(s) 489
Hin1II CATG 2 cut(s) 57, 253
HinfI GANTC 2 cut(s) 479, 485
HpaII CCGG 1 cut(s) 489
Hpy166II GTNNAC 2 cut(s) 46, 344
Hpy188I TCNGA 3 cut(s) 151, 400, 484
Hpy188III TCNNGA 2 cut(s) 382, 494
Hpy8I GTNNAC 2 cut(s) 46, 344
HpyAV CCTTC 1 cut(s) 449
HpyCH4III ACNGT 2 cut(s) 28, 50
HpyCH4IV ACGT 1 cut(s) 314
HpyCH4V TGCA 4 cut(s) 57, 86, 344, 449
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpySE526I ACGT 1 cut(s) 314
Hsp92II CATG 2 cut(s) 57, 253
Kzo9I GATC 4 cut(s) 122, 357, 400, 430
LmnI GCTCC 1 cut(s) 216
LpnPI CCDG 1 cut(s) 403
Lsp1109I GCAGC 2 cut(s) 125, 393
LweI GCATC 1 cut(s) 289
MaeI CTAG 2 cut(s) 465, 494
MaeII ACGT 1 cut(s) 314
MalI GATC 4 cut(s) 124, 359, 402, 432
MboI GATC 4 cut(s) 122, 357, 400, 430
MfeI CAATTG 2 cut(s) 63, 450
MflI RGATCY 3 cut(s) 122, 357, 430
MhlI GDGCHC 2 cut(s) 173, 346
MluCI AATT 4 cut(s) 63, 300, 323, 450
MlyI GAGTC 2 cut(s) 479, 488
MmeI TCCRAC 1 cut(s) 238
MnlI CCTC 3 cut(s) 7, 63, 270
MspA1I CMGCKG 1 cut(s) 406
MspI CCGG 1 cut(s) 489
MunI CAATTG 2 cut(s) 63, 450
MwoI GCNNNNNNNGC 1 cut(s) 233
NdeI CATATG 1 cut(s) 186
NdeII GATC 4 cut(s) 122, 357, 400, 430
NlaIII CATG 2 cut(s) 57, 253
NlaIV GGNNCC 2 cut(s) 170, 212
NspI RCATGY 1 cut(s) 57
PkrI GCNGC 3 cut(s) 115, 408, 462
PleI GAGTC 2 cut(s) 479, 487
PpsI GAGTC 2 cut(s) 479, 487
Ppu21I YACGTR 1 cut(s) 315
PshAI GACNNNNGTC 1 cut(s) 489
PspN4I GGNNCC 2 cut(s) 170, 212
PspPI GGNCC 2 cut(s) 307, 458
PstNI CAGNNNCTG 1 cut(s) 482
PsuI RGATCY 3 cut(s) 122, 357, 430
PvuII CAGCTG 1 cut(s) 406
RsaI GTAC 2 cut(s) 52, 248
RsaNI GTAC 2 cut(s) 51, 247
SatI GCNGC 3 cut(s) 114, 407, 461
Sau3AI GATC 4 cut(s) 122, 357, 400, 430
Sau96I GGNCC 2 cut(s) 307, 458
SchI GAGTC 2 cut(s) 479, 488
SduI GDGCHC 2 cut(s) 173, 346
SetI ASST 4 cut(s) 118, 261, 317, 408
SfaNI GCATC 1 cut(s) 289
SnaBI TACGTA 1 cut(s) 315
Sse9I AATT 4 cut(s) 63, 300, 323, 450
SsiI CCGC 1 cut(s) 461
SspI AATATT 1 cut(s) 144
SspMI CTAG 2 cut(s) 465, 494
StyI CCWWGG 1 cut(s) 349
TaaI ACNGT 2 cut(s) 28, 50
TaiI ACGT 1 cut(s) 317
TasI AATT 4 cut(s) 63, 300, 323, 450
TatI WGTACW 2 cut(s) 50, 246
TauI GCSGC 1 cut(s) 463
TseI GCWGC 2 cut(s) 113, 406
TspDTI ATGAA 3 cut(s) 93, 203, 266
VneI GTGCAC 1 cut(s) 342
XapI RAATTY 1 cut(s) 300
XbaI TCTAGA 1 cut(s) 493
XceI RCATGY 1 cut(s) 57
XmiI GTMKAC 1 cut(s) 45
XspI CTAG 2 cut(s) 465, 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.