Rh6BG118200

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001583
Physical Location & Seq
Reverse (-)
18205185 .. 18208764
3580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG118200.1

Sequence Viewer

Length: 435 bp
ATGGCTTTTCCGAGCGAGGTCGGATTGCGTGTGCTGCTCTGCCCTCTTGGTTCCAACGTCATCGTCCGCACTGCTTGCTGCTCTGTGGGGGTCGCTTTGCCTGTTTACTCAACTTTCAAAGCTATTGAGAGCAAAGACCGAGACGAACAGCAGCGGTGGCTTCTTTACTGGGCAGCTTATGGATCTTTCAGTATAGCAGAAGTGTTTTCAGACAAACTTATCTCCTGGGTTCCACTCTACTATCACATGAAGTTTGCATTTCTCGTTTGGTTACAACTTCCAAGTGCAAATGGGGCAAAGCATTTGTATATGAGGCATCTGCGTCCATTCCTGTTGAGGCATCAAGCACGACTTGATCAAGTTGTAGAGTTTTTATATGCTGAAACGGTAAATTTTCATCTTTCATTTTCTTGTGTTTGTTTTACATTTACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

144

Amino Acids

16.64

Weight (kDa)

8.64

Isoelectric Point (pI)

48.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 34 - 110 1e-29 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 67, 154
AclWI GGATC 1 cut(s) 190
AcsI RAATTY 1 cut(s) 391
AgsI TTSAA 1 cut(s) 118
AjnI CCWGG 1 cut(s) 224
AluBI AGCT 2 cut(s) 122, 176
AluI AGCT 2 cut(s) 122, 176
Alw26I GTCTC 1 cut(s) 135
AlwI GGATC 1 cut(s) 190
ApeKI GCWGC 4 cut(s) 34, 78, 151, 173
ApoI RAATTY 1 cut(s) 391
BbvI GCAGC 4 cut(s) 21, 65, 163, 185
BciT130I CCWGG 1 cut(s) 226
BclI TGATCA 1 cut(s) 355
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 1 cut(s) 433
BisI GCNGC 4 cut(s) 35, 79, 152, 174
BlsI GCNGC 4 cut(s) 36, 80, 153, 175
Bme1390I CCNGG 1 cut(s) 226
BmiI GGNNCC 2 cut(s) 52, 231
BmrFI CCNGG 1 cut(s) 226
BmrI ACTGGG 1 cut(s) 178
BmsI GCATC 2 cut(s) 325, 349
BmuI ACTGGG 1 cut(s) 178
BsaJI CCNNGG 1 cut(s) 225
Bse1I ACTGG 1 cut(s) 173
BseBI CCWGG 1 cut(s) 226
BseDI CCNNGG 1 cut(s) 225
BseNI ACTGG 1 cut(s) 173
BseXI GCAGC 4 cut(s) 21, 65, 163, 185
BsmAI GTCTC 1 cut(s) 135
BsmBI CGTCTC 1 cut(s) 135
Bsp143I GATC 2 cut(s) 182, 355
BspACI CCGC 2 cut(s) 67, 154
BspLI GGNNCC 2 cut(s) 52, 231
BspPI GGATC 1 cut(s) 190
BsrI ACTGG 1 cut(s) 173
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 2 cut(s) 182, 355
Bst2UI CCWGG 1 cut(s) 226
Bst4CI ACNGT 1 cut(s) 388
BstAPI GCANNNNNTGC 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 76
BstKTI GATC 2 cut(s) 185, 358
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 2 cut(s) 182, 355
BstMWI GCNNNNNNNGC 4 cut(s) 34, 75, 157, 293
BstNI CCWGG 1 cut(s) 226
BstSCI CCNGG 1 cut(s) 224
BstV1I GCAGC 4 cut(s) 21, 65, 163, 185
BstX2I RGATCY 1 cut(s) 182
BstYI RGATCY 1 cut(s) 182
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 1 cut(s) 69
Cac8I GCNNGC 1 cut(s) 76
CseI GACGC 1 cut(s) 311
CviAII CATG 1 cut(s) 247
CviJI RGCY 4 cut(s) 5, 122, 160, 176
CviKI_1 RGCY 4 cut(s) 5, 122, 160, 176
DpnI GATC 2 cut(s) 184, 357
DpnII GATC 2 cut(s) 182, 355
EcoRII CCWGG 1 cut(s) 224
Esp3I CGTCTC 1 cut(s) 135
FaeI CATG 1 cut(s) 250
FaiI YATR 7 cut(s) 180, 194, 248, 309, 311, 376, 378
FalI AAGNNNNNCTT 2 cut(s) 336, 368
FatI CATG 1 cut(s) 246
FbaI TGATCA 1 cut(s) 355
Fnu4HI GCNGC 4 cut(s) 35, 79, 152, 174
Fsp4HI GCNGC 4 cut(s) 35, 79, 152, 174
FspBI CTAG 1 cut(s) 433
GluI GCNGC 4 cut(s) 35, 79, 152, 174
HgaI GACGC 1 cut(s) 311
Hin1II CATG 1 cut(s) 250
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 3 cut(s) 12, 23, 211
Hpy8I GTNNAC 1 cut(s) 106
HpyCH4III ACNGT 1 cut(s) 388
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 2 cut(s) 257, 287
HpyF10VI GCNNNNNNNGC 4 cut(s) 34, 75, 157, 293
HpySE526I ACGT 1 cut(s) 57
Hsp92II CATG 1 cut(s) 250
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 2 cut(s) 182, 355
LpnPI CCDG 5 cut(s) 114, 154, 211, 238, 344
Lsp1109I GCAGC 4 cut(s) 21, 65, 163, 185
LweI GCATC 2 cut(s) 325, 349
MaeI CTAG 1 cut(s) 433
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 1 cut(s) 270
MalI GATC 2 cut(s) 184, 357
MboI GATC 2 cut(s) 182, 355
MflI RGATCY 1 cut(s) 182
MluCI AATT 1 cut(s) 391
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 4 cut(s) 10, 54, 306, 330
MspA1I CMGCKG 1 cut(s) 154
MspR9I CCNGG 1 cut(s) 226
MvaI CCWGG 1 cut(s) 226
MwoI GCNNNNNNNGC 4 cut(s) 34, 75, 157, 293
NdeII GATC 2 cut(s) 182, 355
NlaIII CATG 1 cut(s) 250
NlaIV GGNNCC 2 cut(s) 52, 231
PkrI GCNGC 4 cut(s) 36, 80, 153, 175
Psp6I CCWGG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 2 cut(s) 52, 231
PsuI RGATCY 1 cut(s) 182
SatI GCNGC 4 cut(s) 35, 79, 152, 174
Sau3AI GATC 2 cut(s) 182, 355
ScrFI CCNGG 1 cut(s) 226
SetI ASST 5 cut(s) 21, 60, 124, 178, 434
SfaNI GCATC 2 cut(s) 325, 349
Sse9I AATT 1 cut(s) 391
SsiI CCGC 2 cut(s) 67, 154
SspMI CTAG 1 cut(s) 433
StyD4I CCNGG 1 cut(s) 224
TaaI ACNGT 1 cut(s) 388
TaiI ACGT 1 cut(s) 60
TaqII GACCGA 1 cut(s) 153
TasI AATT 1 cut(s) 391
TscAI CASTG 1 cut(s) 76
TseI GCWGC 4 cut(s) 34, 78, 151, 173
TspDTI ATGAA 3 cut(s) 263, 386, 393
TspRI CASTG 1 cut(s) 76
XapI RAATTY 1 cut(s) 391
XspI CTAG 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.