Rh2AG153300

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001583
Physical Location & Seq
Forward (+)
14121913 .. 14124864
2952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG153300.1

Sequence Viewer

Length: 678 bp
ATGGCGCTTCTCGGATCCAACATAGCCAGTGAGGTCGGGCTTCGGCTGCTCCTTTGTCCTCTTGGTTCTAACATTGTGATTCGAACAGCGTGTTGTTCTGTGGGGATTGTTGTACCGGTATACTGTACATGCAAGGCAATTGAGAGGAAAGATGAAACTGCACAACAGAAGTGGCTTCTTTATTGGGCGGCTTATGGATCTTTCAGCCTTGTGGAAATATTTTCAGATAGGCTTATATCTTGGTGCCCATATTACTATCACATGAAGTTTGCCTTTCTTGTTTGGCTCCAACTTCCATCTGCTGATGGGGCGAAGCAGTTGTACATGAACCACCTACGCCCATTCTTTTTGAGGCATCAAACTAAAGTTGATAGAATTTTGGGCCTTACATATGGTGAATTGCTCAAACTCATTAGTGCACACCAAGGTGAGATCCACTATGCTAGGGCTATGTTCTTGAAAGTTTTTGGTTCAGATCAGATGCCGAGGGGCAGGGCTAATACAGATCTGCCACAGAACAATGCAATTGAAGGGCCGCCTAGAACAACCAGAGAGTCTGACTCCGAGAAAAAGAGTAGAGACAAGAACTATTCTCTCCTCTTTTGTGATAAGGTAATTGCTGAGGCATGTTCTCTCTTCCTTGAGAAAATCATGTATCGAGTTATGATGGTGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

225

Amino Acids

25.73

Weight (kDa)

8.98

Isoelectric Point (pI)

45.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 39 - 115 1.2e-26 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 243
AccI GTMKAC 1 cut(s) 120
AciI CCGC 2 cut(s) 188, 536
AclWI GGATC 4 cut(s) 9, 22, 205, 427
AcsI RAATTY 1 cut(s) 375
AfaI GTAC 3 cut(s) 114, 127, 323
AgeI ACCGGT 1 cut(s) 115
AgsI TTSAA 2 cut(s) 460, 530
AleI CACNNNNGTG 1 cut(s) 426
Alw21I GWGCWC 1 cut(s) 421
Alw26I GTCTC 1 cut(s) 573
Alw44I GTGCAC 1 cut(s) 417
AlwI GGATC 4 cut(s) 9, 22, 205, 427
AoxI GGCC 2 cut(s) 382, 533
ApaLI GTGCAC 1 cut(s) 417
ApeKI GCWGC 1 cut(s) 46
ApoI RAATTY 1 cut(s) 375
AsiGI ACCGGT 1 cut(s) 115
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 382, 533
AsuHPI GGTGA 2 cut(s) 407, 440
AsuII TTCGAA 1 cut(s) 82
BaeGI GKGCMC 2 cut(s) 248, 421
BamHI GGATCC 1 cut(s) 14
BanI GGYRCC 1 cut(s) 243
BarI GAAGNNNNNNTAC 2 cut(s) 305, 337
Bbv12I GWGCWC 1 cut(s) 421
BbvCI CCTCAGC 1 cut(s) 621
BbvI GCAGC 1 cut(s) 33
BccI CCATC 3 cut(s) 299, 304, 661
BcoDI GTCTC 1 cut(s) 573
BfaI CTAG 2 cut(s) 444, 540
BfoI RGCGCY 1 cut(s) 8
BglII AGATCT 1 cut(s) 505
BisI GCNGC 3 cut(s) 47, 189, 536
BlsI GCNGC 3 cut(s) 48, 190, 537
BmgT120I GGNCC 2 cut(s) 382, 533
BmiI GGNNCC 3 cut(s) 16, 245, 287
BmsI GCATC 2 cut(s) 364, 471
BplI GAGNNNNNCTC 2 cut(s) 545, 577
Bpu10I CCTNAGC 1 cut(s) 621
Bpu14I TTCGAA 1 cut(s) 82
BpuEI CTTGAG 1 cut(s) 662
BsaJI CCNNGG 2 cut(s) 424, 485
BsaWI WCCGGW 1 cut(s) 115
Bse118I RCCGGY 1 cut(s) 115
Bse1I ACTGG 1 cut(s) 27
BseDI CCNNGG 2 cut(s) 424, 485
BseMII CTCAG 1 cut(s) 612
BseNI ACTGG 1 cut(s) 27
BseRI GAGGAG 1 cut(s) 587
BseSI GKGCMC 2 cut(s) 248, 421
BseXI GCAGC 1 cut(s) 33
BsgI GTGCAG 1 cut(s) 144
BshFI GGCC 2 cut(s) 384, 535
BshNI GGYRCC 1 cut(s) 243
BshTI ACCGGT 1 cut(s) 115
BsiHKAI GWGCWC 1 cut(s) 421
BsiSI CCGG 1 cut(s) 116
BsmAI GTCTC 1 cut(s) 573
BsnI GGCC 2 cut(s) 384, 535
Bsp119I TTCGAA 1 cut(s) 82
Bsp1286I GDGCHC 2 cut(s) 248, 421
Bsp1407I TGTACA 2 cut(s) 125, 321
Bsp143I GATC 5 cut(s) 14, 197, 432, 475, 505
BspACI CCGC 2 cut(s) 188, 536
BspANI GGCC 2 cut(s) 384, 535
BspCNI CTCAG 1 cut(s) 613
BspLI GGNNCC 3 cut(s) 16, 245, 287
BspPI GGATC 4 cut(s) 9, 22, 205, 427
BspT104I TTCGAA 1 cut(s) 82
BspT107I GGYRCC 1 cut(s) 243
BsrFI RCCGGY 1 cut(s) 115
BsrGI TGTACA 2 cut(s) 125, 321
BsrI ACTGG 1 cut(s) 27
BssAI RCCGGY 1 cut(s) 115
BssECI CCNNGG 2 cut(s) 424, 485
BssMI GATC 5 cut(s) 14, 197, 432, 475, 505
BssNAI GTATAC 1 cut(s) 121
BssT1I CCWWGG 1 cut(s) 424
Bst1107I GTATAC 1 cut(s) 121
Bst4CI ACNGT 1 cut(s) 125
Bst6I CTCTTC 1 cut(s) 641
BstAUI TGTACA 2 cut(s) 125, 321
BstBI TTCGAA 1 cut(s) 82
BstDEI CTNAG 1 cut(s) 621
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 5 cut(s) 17, 200, 435, 478, 508
BstMAI GTCTC 1 cut(s) 573
BstMBI GATC 5 cut(s) 14, 197, 432, 475, 505
BstMWI GCNNNNNNNGC 2 cut(s) 46, 308
BstNSI RCATGY 2 cut(s) 132, 630
BstSLI GKGCMC 2 cut(s) 248, 421
BstV1I GCAGC 1 cut(s) 33
BstX2I RGATCY 4 cut(s) 14, 197, 432, 505
BstYI RGATCY 4 cut(s) 14, 197, 432, 505
BstZ17I GTATAC 1 cut(s) 121
BsuRI GGCC 2 cut(s) 384, 535
BtsIMutI CAGTG 1 cut(s) 34
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 115
Cfr13I GGNCC 2 cut(s) 382, 533
Csp6I GTAC 3 cut(s) 113, 126, 322
CspAI ACCGGT 1 cut(s) 115
CspCI CAANNNNNGTGG 2 cut(s) 152, 187
CviAII CATG 5 cut(s) 129, 262, 325, 627, 652
CviQI GTAC 3 cut(s) 113, 126, 322
DdeI CTNAG 1 cut(s) 621
DpnI GATC 5 cut(s) 16, 199, 434, 477, 507
DpnII GATC 5 cut(s) 14, 197, 432, 475, 505
Eam1104I CTCTTC 1 cut(s) 641
EarI CTCTTC 1 cut(s) 641
Eco130I CCWWGG 1 cut(s) 424
EcoT14I CCWWGG 1 cut(s) 424
ErhI CCWWGG 1 cut(s) 424
FaeI CATG 5 cut(s) 132, 265, 328, 630, 655
FalI AAGNNNNNCTT 2 cut(s) 257, 289
FatI CATG 5 cut(s) 128, 261, 324, 626, 651
FauNDI CATATG 1 cut(s) 391
FblI GTMKAC 1 cut(s) 120
Fnu4HI GCNGC 3 cut(s) 47, 189, 536
Fsp4HI GCNGC 3 cut(s) 47, 189, 536
FspBI CTAG 2 cut(s) 444, 540
GlaI GCGC 1 cut(s) 6
GluI GCNGC 3 cut(s) 47, 189, 536
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 384, 535
HapII CCGG 1 cut(s) 116
HhaI GCGC 1 cut(s) 7
Hin1II CATG 5 cut(s) 132, 265, 328, 630, 655
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 3 cut(s) 79, 554, 560
HpaII CCGG 1 cut(s) 116
HphI GGTGA 2 cut(s) 407, 440
Hpy166II GTNNAC 2 cut(s) 121, 419
Hpy188I TCNGA 6 cut(s) 14, 226, 475, 480, 559, 565
Hpy188III TCNNGA 1 cut(s) 457
Hpy8I GTNNAC 2 cut(s) 121, 419
HpyAV CCTTC 1 cut(s) 524
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4V TGCA 4 cut(s) 132, 161, 419, 524
HpyF10VI GCNNNNNNNGC 2 cut(s) 46, 308
HpyF3I CTNAG 1 cut(s) 621
Hsp92II CATG 5 cut(s) 132, 265, 328, 630, 655
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 5 cut(s) 14, 197, 432, 475, 505
LmnI GCTCC 2 cut(s) 54, 291
LpnPI CCDG 4 cut(s) 40, 129, 478, 562
Lsp1109I GCAGC 1 cut(s) 33
LweI GCATC 2 cut(s) 364, 471
MaeI CTAG 2 cut(s) 444, 540
MalI GATC 5 cut(s) 16, 199, 434, 477, 507
MboI GATC 5 cut(s) 14, 197, 432, 475, 505
MboII GAAGA 1 cut(s) 628
MfeI CAATTG 2 cut(s) 138, 525
MflI RGATCY 4 cut(s) 14, 197, 432, 505
MhlI GDGCHC 2 cut(s) 248, 421
MluCI AATT 5 cut(s) 138, 375, 398, 525, 615
MlyI GAGTC 2 cut(s) 554, 563
MmeI TCCRAC 2 cut(s) 42, 313
MnlI CCTC 7 cut(s) 25, 69, 138, 345, 480, 608, 616
MslI CAYNNNNRTG 1 cut(s) 426
MspI CCGG 1 cut(s) 116
MunI CAATTG 2 cut(s) 138, 525
MwoI GCNNNNNNNGC 2 cut(s) 46, 308
NdeI CATATG 1 cut(s) 391
NdeII GATC 5 cut(s) 14, 197, 432, 475, 505
NlaIII CATG 5 cut(s) 132, 265, 328, 630, 655
NlaIV GGNNCC 3 cut(s) 16, 245, 287
NmeAIII GCCGAG 1 cut(s) 510
NspI RCATGY 2 cut(s) 132, 630
NspV TTCGAA 1 cut(s) 82
OliI CACNNNNGTG 1 cut(s) 426
PfeI GAWTC 1 cut(s) 79
PinAI ACCGGT 1 cut(s) 115
PkrI GCNGC 3 cut(s) 48, 190, 537
PleI GAGTC 2 cut(s) 554, 562
PpsI GAGTC 2 cut(s) 554, 562
PspN4I GGNNCC 3 cut(s) 16, 245, 287
PspPI GGNCC 2 cut(s) 382, 533
PsuI RGATCY 4 cut(s) 14, 197, 432, 505
RsaI GTAC 3 cut(s) 114, 127, 323
RsaNI GTAC 3 cut(s) 113, 126, 322
RseI CAYNNNNRTG 1 cut(s) 426
SatI GCNGC 3 cut(s) 47, 189, 536
Sau3AI GATC 5 cut(s) 14, 197, 432, 475, 505
Sau96I GGNCC 2 cut(s) 382, 533
SchI GAGTC 2 cut(s) 554, 563
SduI GDGCHC 2 cut(s) 248, 421
SetI ASST 4 cut(s) 36, 336, 430, 615
SfaNI GCATC 2 cut(s) 364, 471
SfuI TTCGAA 1 cut(s) 82
SmiMI CAYNNNNRTG 1 cut(s) 426
SmlI CTYRAG 1 cut(s) 641
SmoI CTYRAG 1 cut(s) 641
Sse9I AATT 5 cut(s) 138, 375, 398, 525, 615
SsiI CCGC 2 cut(s) 188, 536
SspI AATATT 1 cut(s) 219
SspMI CTAG 2 cut(s) 444, 540
StyI CCWWGG 1 cut(s) 424
TaaI ACNGT 1 cut(s) 125
TaqI TCGA 2 cut(s) 82, 658
TasI AATT 5 cut(s) 138, 375, 398, 525, 615
TatI WGTACW 2 cut(s) 125, 321
TauI GCSGC 2 cut(s) 191, 538
TfiI GAWTC 1 cut(s) 79
TscAI CASTG 1 cut(s) 34
TseI GCWGC 1 cut(s) 46
TspDTI ATGAA 3 cut(s) 168, 278, 341
TspRI CASTG 1 cut(s) 34
VneI GTGCAC 1 cut(s) 417
XapI RAATTY 1 cut(s) 375
XceI RCATGY 2 cut(s) 132, 630
XmiI GTMKAC 1 cut(s) 120
XspI CTAG 2 cut(s) 444, 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.