RLG00000017086

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001583
Physical Location & Seq
Forward (+)
12717803 .. 12720444
2642 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017086

Sequence Viewer

Length: 627 bp
ATGATTTCTCTCCTTTGCCTGGATAAAAATGGCGCTTCTCGGATAGTGAGATCATTTTGCTTCTGTCTATTCACCATTGGCATCATTGTCGCGTGTGATGTTGGAAAGGATTTCCTATATGATAGTTATGGTCAAATTGATGATTGGGAGAATTTGGTGCAGGTCGGGCTTCGGCTGCTCCTTTGTCCTCTTGGTTCTAACATTGTGATTCGAACAGCGTGTTGTTCTGTGGGGATTGTTGTACCAGTATACCCTTATGGATCTTTCAGCCTTGTGGAAATATTTTCAGATAGGCTTATATCTTGTTGTAACTTTCTTCTATCAAAAATAACTAAATGCCCGCTTTCCATCCGGGGGGTGAAGCAGTTGTACATGAACCACCTACGCCCGTTCTTTTTGAGGCATCAAACTAAAGTTGATAGAATTTTGGGCCTTACGTATGGTGAATTGCTCAAACTCATTAGTGCACACCAAGGAGAGATCCACTATGTTAGGGCTATGTTCTTGAAAGTTTTTGGTTCAGATCAGCTGCCGATGGGCAGGGCTGATACAGATCTGCCACAGAACAATGCAATTGAAGGGCCGCCTAGAACAACCACAGAGTCTGACTCCGGTCTAGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

209

Amino Acids

23.22

Weight (kDa)

6.87

Isoelectric Point (pI)

36.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 151
AccI GTMKAC 1 cut(s) 249
AccII CGCG 1 cut(s) 92
AciI CCGC 2 cut(s) 341, 584
AclWI GGATC 2 cut(s) 268, 475
AcsI RAATTY 2 cut(s) 151, 423
AfaI GTAC 2 cut(s) 243, 371
AfiI CCNNNNNNNGG 2 cut(s) 19, 354
AgsI TTSAA 2 cut(s) 508, 578
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 1 cut(s) 529
AluI AGCT 1 cut(s) 529
Alw21I GWGCWC 1 cut(s) 469
Alw44I GTGCAC 1 cut(s) 465
AlwI GGATC 2 cut(s) 268, 475
AlwNI CAGNNNCTG 1 cut(s) 605
AoxI GGCC 2 cut(s) 430, 581
ApaLI GTGCAC 1 cut(s) 465
ApeKI GCWGC 2 cut(s) 175, 529
ApoI RAATTY 2 cut(s) 151, 423
AspLEI GCGC 1 cut(s) 35
AspS9I GGNCC 2 cut(s) 430, 581
AsuC2I CCSGG 1 cut(s) 353
AsuHPI GGTGA 3 cut(s) 64, 370, 455
AsuII TTCGAA 1 cut(s) 211
BaeGI GKGCMC 1 cut(s) 469
BarI GAAGNNNNNNTAC 2 cut(s) 353, 385
Bbv12I GWGCWC 1 cut(s) 469
BbvI GCAGC 2 cut(s) 162, 516
BccI CCATC 2 cut(s) 356, 529
BcgI CGANNNNNNTGC 2 cut(s) 70, 104
BciT130I CCWGG 1 cut(s) 20
BcnI CCSGG 1 cut(s) 353
BfaI CTAG 2 cut(s) 588, 617
BfoI RGCGCY 1 cut(s) 36
BfuAI ACCTGC 1 cut(s) 151
BglII AGATCT 1 cut(s) 553
BisI GCNGC 3 cut(s) 176, 530, 584
BlsI GCNGC 3 cut(s) 177, 531, 585
Bme1390I CCNGG 2 cut(s) 20, 353
BmgT120I GGNCC 2 cut(s) 430, 581
BmrFI CCNGG 2 cut(s) 20, 353
BmsI GCATC 2 cut(s) 90, 412
BoxI GACNNNNGTC 1 cut(s) 612
BplI GAGNNNNNCTC 2 cut(s) 593, 625
Bpu14I TTCGAA 1 cut(s) 211
BpuMI CCSGG 1 cut(s) 353
BsaAI YACGTR 1 cut(s) 438
BsaBI GATNNNNATC 1 cut(s) 552
BsaJI CCNNGG 2 cut(s) 352, 472
BsaWI WCCGGW 1 cut(s) 611
Bsc4I CCNNNNNNNGG 2 cut(s) 19, 354
Bse1I ACTGG 1 cut(s) 245
Bse8I GATNNNNATC 1 cut(s) 552
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 2 cut(s) 352, 472
BseGI GGATG 1 cut(s) 348
BseJI GATNNNNATC 1 cut(s) 552
BseLI CCNNNNNNNGG 2 cut(s) 19, 354
BseNI ACTGG 1 cut(s) 245
BseSI GKGCMC 1 cut(s) 469
BseXI GCAGC 2 cut(s) 162, 516
BsgI GTGCAG 1 cut(s) 179
Bsh1236I CGCG 1 cut(s) 92
BshFI GGCC 2 cut(s) 432, 583
BsiHKAI GWGCWC 1 cut(s) 469
BsiSI CCGG 2 cut(s) 352, 612
BslI CCNNNNNNNGG 2 cut(s) 19, 354
BsnI GGCC 2 cut(s) 432, 583
Bsp119I TTCGAA 1 cut(s) 211
Bsp1286I GDGCHC 1 cut(s) 469
Bsp1407I TGTACA 1 cut(s) 369
Bsp143I GATC 5 cut(s) 50, 260, 480, 523, 553
BspACI CCGC 2 cut(s) 341, 584
BspANI GGCC 2 cut(s) 432, 583
BspFNI CGCG 1 cut(s) 92
BspMI ACCTGC 1 cut(s) 151
BspPI GGATC 2 cut(s) 268, 475
BspT104I TTCGAA 1 cut(s) 211
BsrGI TGTACA 1 cut(s) 369
BsrI ACTGG 1 cut(s) 245
BssECI CCNNGG 2 cut(s) 352, 472
BssMI GATC 5 cut(s) 50, 260, 480, 523, 553
BssNAI GTATAC 1 cut(s) 250
BssT1I CCWWGG 1 cut(s) 472
Bst1107I GTATAC 1 cut(s) 250
Bst2UI CCWGG 1 cut(s) 20
BstAUI TGTACA 1 cut(s) 369
BstBAI YACGTR 1 cut(s) 438
BstBI TTCGAA 1 cut(s) 211
BstC8I GCNNGC 1 cut(s) 341
BstF5I GGATG 1 cut(s) 348
BstFNI CGCG 1 cut(s) 92
BstH2I RGCGCY 1 cut(s) 36
BstHHI GCGC 1 cut(s) 35
BstKTI GATC 5 cut(s) 53, 263, 483, 526, 556
BstMBI GATC 5 cut(s) 50, 260, 480, 523, 553
BstMWI GCNNNNNNNGC 2 cut(s) 166, 175
BstNI CCWGG 1 cut(s) 20
BstPAI GACNNNNGTC 1 cut(s) 612
BstSCI CCNGG 2 cut(s) 18, 351
BstSLI GKGCMC 1 cut(s) 469
BstSNI TACGTA 1 cut(s) 438
BstUI CGCG 1 cut(s) 92
BstV1I GCAGC 2 cut(s) 162, 516
BstX2I RGATCY 3 cut(s) 260, 480, 553
BstYI RGATCY 3 cut(s) 260, 480, 553
BstZ17I GTATAC 1 cut(s) 250
BsuRI GGCC 2 cut(s) 432, 583
BtsCI GGATG 1 cut(s) 348
BveI ACCTGC 1 cut(s) 151
Cac8I GCNNGC 1 cut(s) 341
CaiI CAGNNNCTG 1 cut(s) 605
CfoI GCGC 1 cut(s) 35
Cfr13I GGNCC 2 cut(s) 430, 581
Csp6I GTAC 2 cut(s) 242, 370
CviAII CATG 1 cut(s) 373
CviJI RGCY 9 cut(s) 169, 175, 270, 295, 432, 497, 529, 545, 583
CviKI_1 RGCY 9 cut(s) 169, 175, 270, 295, 432, 497, 529, 545, 583
CviQI GTAC 2 cut(s) 242, 370
DpnI GATC 5 cut(s) 52, 262, 482, 525, 555
DpnII GATC 5 cut(s) 50, 260, 480, 523, 553
Eco105I TACGTA 1 cut(s) 438
Eco130I CCWWGG 1 cut(s) 472
EcoRII CCWGG 1 cut(s) 18
EcoT14I CCWWGG 1 cut(s) 472
ErhI CCWWGG 1 cut(s) 472
FaeI CATG 1 cut(s) 376
FatI CATG 1 cut(s) 372
FauI CCCGC 1 cut(s) 348
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 3 cut(s) 176, 530, 584
FokI GGATG 1 cut(s) 335
Fsp4HI GCNGC 3 cut(s) 176, 530, 584
FspBI CTAG 2 cut(s) 588, 617
GlaI GCGC 1 cut(s) 34
GluI GCNGC 3 cut(s) 176, 530, 584
HaeII RGCGCY 1 cut(s) 36
HaeIII GGCC 2 cut(s) 432, 583
HapII CCGG 2 cut(s) 352, 612
HhaI GCGC 1 cut(s) 35
Hin1II CATG 1 cut(s) 376
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HinfI GANTC 3 cut(s) 208, 602, 608
HpaII CCGG 2 cut(s) 352, 612
HphI GGTGA 3 cut(s) 64, 370, 455
Hpy166II GTNNAC 2 cut(s) 250, 467
Hpy188I TCNGA 4 cut(s) 42, 289, 523, 607
Hpy188III TCNNGA 2 cut(s) 505, 617
Hpy8I GTNNAC 2 cut(s) 250, 467
HpyAV CCTTC 1 cut(s) 572
HpyCH4IV ACGT 1 cut(s) 437
HpyCH4V TGCA 3 cut(s) 160, 467, 572
HpyF10VI GCNNNNNNNGC 2 cut(s) 166, 175
HpySE526I ACGT 1 cut(s) 437
Hsp92II CATG 1 cut(s) 376
HspAI GCGC 1 cut(s) 33
Kzo9I GATC 5 cut(s) 50, 260, 480, 523, 553
LmnI GCTCC 1 cut(s) 183
LpnPI CCDG 6 cut(s) 5, 32, 146, 258, 365, 526
Lsp1109I GCAGC 2 cut(s) 162, 516
LweI GCATC 2 cut(s) 90, 412
MaeI CTAG 2 cut(s) 588, 617
MaeII ACGT 1 cut(s) 437
MaeIII GTNAC 1 cut(s) 308
MalI GATC 5 cut(s) 52, 262, 482, 525, 555
MboI GATC 5 cut(s) 50, 260, 480, 523, 553
MboII GAAGA 1 cut(s) 308
MfeI CAATTG 1 cut(s) 573
MflI RGATCY 3 cut(s) 260, 480, 553
MhlI GDGCHC 1 cut(s) 469
MluCI AATT 5 cut(s) 135, 151, 423, 446, 573
MlyI GAGTC 2 cut(s) 602, 611
MmeI TCCRAC 1 cut(s) 82
MnlI CCTC 2 cut(s) 198, 393
MspA1I CMGCKG 1 cut(s) 529
MspI CCGG 2 cut(s) 352, 612
MspR9I CCNGG 2 cut(s) 20, 353
MunI CAATTG 1 cut(s) 573
MvaI CCWGG 1 cut(s) 20
MvnI CGCG 1 cut(s) 92
MwoI GCNNNNNNNGC 2 cut(s) 166, 175
NciI CCSGG 1 cut(s) 353
NdeII GATC 5 cut(s) 50, 260, 480, 523, 553
NlaIII CATG 1 cut(s) 376
NspV TTCGAA 1 cut(s) 211
PfeI GAWTC 1 cut(s) 208
PkrI GCNGC 3 cut(s) 177, 531, 585
PleI GAGTC 2 cut(s) 602, 610
PpsI GAGTC 2 cut(s) 602, 610
Ppu21I YACGTR 1 cut(s) 438
PshAI GACNNNNGTC 1 cut(s) 612
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
PspPI GGNCC 2 cut(s) 430, 581
PstNI CAGNNNCTG 1 cut(s) 605
PsuI RGATCY 3 cut(s) 260, 480, 553
PvuII CAGCTG 1 cut(s) 529
RsaI GTAC 2 cut(s) 243, 371
RsaNI GTAC 2 cut(s) 242, 370
SatI GCNGC 3 cut(s) 176, 530, 584
Sau3AI GATC 5 cut(s) 50, 260, 480, 523, 553
Sau96I GGNCC 2 cut(s) 430, 581
SchI GAGTC 2 cut(s) 602, 611
ScrFI CCNGG 2 cut(s) 20, 353
SduI GDGCHC 1 cut(s) 469
SetI ASST 4 cut(s) 165, 384, 440, 531
SfaNI GCATC 2 cut(s) 90, 412
SfuI TTCGAA 1 cut(s) 211
SnaBI TACGTA 1 cut(s) 438
Sse9I AATT 5 cut(s) 135, 151, 423, 446, 573
SsiI CCGC 2 cut(s) 341, 584
SspI AATATT 1 cut(s) 282
SspMI CTAG 2 cut(s) 588, 617
StyD4I CCNGG 2 cut(s) 18, 351
StyI CCWWGG 1 cut(s) 472
TaiI ACGT 1 cut(s) 440
TaqI TCGA 1 cut(s) 211
TasI AATT 5 cut(s) 135, 151, 423, 446, 573
TatI WGTACW 1 cut(s) 369
TauI GCSGC 1 cut(s) 586
TfiI GAWTC 1 cut(s) 208
TseI GCWGC 2 cut(s) 175, 529
TspDTI ATGAA 1 cut(s) 389
VneI GTGCAC 1 cut(s) 465
XapI RAATTY 2 cut(s) 151, 423
XbaI TCTAGA 1 cut(s) 616
XmiI GTMKAC 1 cut(s) 249
XspI CTAG 2 cut(s) 588, 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.