Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003491

Physical Location & Seq

Genomic Coordinates Forward (+)

7943308 .. 7945744

Gene Structure 2437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g14300.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGATGAGCAGAAGCGCTGGTAGAAATGCATTTTGTGAGGCTCAGCCTGAGGGCCATATTTTCGAGACATCCAACTCAAGAGTTTTCAGTTACGAAGAGCTAAAGACTGCTACTAGGAATTTTCGGCAAGAAGGATTACTTGGTGAGGAAAGCTTTGGAAAGGTTTTCAAGGGTTGGCTGGATGAAAAGACTCTTGTACCTTCAAATGCTGGCACTAGAATGATCATTGCTGTCAAGAAATGGAACCCAGATAGCTTTCAAGGCCTTAAAGAATGGCAGGCAGAGGTTGACTTCCTAGGAAGGCTTTCTCATCCTAACATTGTTAAGCTATTGGGACACTGCTCAGAGGATAAGCAGCTGCCCCTTGTCTATGAATTCATGCCGAAAGGATCCCTTGTCTATGAATTCATGCCGAAAAGAAGCTTGGCGGATCATCTTTTCAGAAGAGCAGTACCGTCTTGGGACAACAGACTCAAAATAGCTATCGGAGTAGCTCGCGCCTTATCTTTCTTACACAGTTTACAGAAACAAATCATCCTCAGAGATTTCAAAGCCTCTAATATCTTGCTTGATGAGAATTACAATGCAAAACTCTCAGGGTTTGGCTTGGCAATGTTGGGGCCAAGTGATGCAGAGTTATATGTAGAGACTGAAGTTATGGGCACATATGGTTATGCTGCTCCAGAGTACGTTGCAACAGGTTGTTTGTACGTGAAGAGCGATGTGTATAGCTTCGGTGTTGTGCTACTCGAAATGCTGACATGTTTAAAGGCCCTTGATATGAACCGTTCTTCTAACAAACATAATTTAGTCGATTGGGCTAAACCACTTCTCTCTCATAAAAGAACATTAGAAACCCTCATAGATGCCAAGATAAAGGGCCAATATTCCTCCCGGGCATGGCCGGACTTGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

306

Amino Acids

34.5

Weight (kDa)

8.52

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	43 - 266	4.9e-34	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	45 - 255	2.3e-38	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35600 AT4G35600
fragaria_vesca	FvH4_1g10470 FvH4_1g10470 FvH4_1g10470 FvH4_1g14300 FvH4_1g14300 FvH4_1g15410 FvH4_1g15410 FvH4_1g15410 FvH4_1g15410
malus_domestica	MD02G1117900.v1.1 MD15G1232600.v1.1
prunus_persica	Prupe.7G181500_v2.0.a1
pyrus_communis	pycom02g09150 pycom15g20700
rosa_chinensis	RchiOBHm_Chr2g0097331 RchiOBHm_Chr2g0102961
rosa_laevigata	RLG00000009020 RLG00000016718 RLG00000017194 RLG00000017335
rosa_multiflora	Rmu_sc0000388.1_g000037 Rmu_sc0001060.1_g000013 Rmu_sc0035636.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144760 Rroxscaffold_5G00347840
rosa_rugosa	Rorug02G0065900 Rorug02G0065900 Rorug02G0110700
rosa_samantha	Rh2CG117400 Rh2CG165600 Rh2DG116600
rosa_wichuraiana	Rw2G008810 Rw2G012430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	498
AciI	CCGC	1 cut(s)	428
AclWI	GGATC	3 cut(s)	384, 397, 438
AcoI	YGGCCR	1 cut(s)	902
AcsI	RAATTY	3 cut(s)	118, 374, 404
AcuI	CTGAAG	1 cut(s)	672
AfaI	GTAC	4 cut(s)	198, 453, 689, 710
AfeI	AGCGCT	1 cut(s)	16
AfiI	CCNNNNNNNGG	1 cut(s)	900
AflIII	ACRYGT	1 cut(s)	761
AgsI	TTSAA	4 cut(s)	169, 204, 260, 550
AjuI	GAANNNNNNNTTGG	4 cut(s)	123, 155, 407, 439
AluBI	AGCT	9 cut(s)	100, 153, 255, 328, 358, 423, 482, 494, 732
AluI	AGCT	9 cut(s)	100, 153, 255, 328, 358, 423, 482, 494, 732
Alw26I	GTCTC	2 cut(s)	59, 641
AlwI	GGATC	3 cut(s)	384, 397, 438
Ama87I	CYCGRG	1 cut(s)	894
Aor51HI	AGCGCT	1 cut(s)	16
AoxI	GGCC	6 cut(s)	52, 262, 620, 771, 880, 902
ApeKI	GCWGC	3 cut(s)	355, 358, 677
ApoI	RAATTY	3 cut(s)	118, 374, 404
Asp700I	GAANNNNTTC	1 cut(s)	304
AspA2I	CCTAGG	1 cut(s)	295
AspLEI	GCGC	2 cut(s)	17, 500
AspS9I	GGNCC	4 cut(s)	52, 620, 772, 880
AsuC2I	CCSGG	2 cut(s)	895, 896
AsuHPI	GGTGA	1 cut(s)	155
AvaI	CYCGRG	1 cut(s)	894
AvrII	CCTAGG	1 cut(s)	295
AxyI	CCTNAGG	1 cut(s)	48
BaeGI	GKGCMC	1 cut(s)	665
BaeI	ACNNNNGTAYC	2 cut(s)	180, 213
BamHI	GGATCC	1 cut(s)	389
BbvI	GCAGC	3 cut(s)	345, 367, 664
BclI	TGATCA	1 cut(s)	222
BcnI	CCSGG	2 cut(s)	895, 896
BcoDI	GTCTC	2 cut(s)	59, 641
BfaI	CTAG	3 cut(s)	114, 216, 296
BfoI	RGCGCY	1 cut(s)	18
BisI	GCNGC	3 cut(s)	356, 359, 678
BlnI	CCTAGG	1 cut(s)	295
BlpI	GCTNAGC	1 cut(s)	42
BlsI	GCNGC	3 cut(s)	357, 360, 679
Bme1390I	CCNGG	2 cut(s)	895, 896
BmeT110I	CYCGRG	1 cut(s)	894
BmgT120I	GGNCC	4 cut(s)	52, 620, 772, 880
BmiI	GGNNCC	3 cut(s)	245, 391, 621
BmrFI	CCNGG	2 cut(s)	895, 896
BmsI	GCATC	2 cut(s)	619, 856
BpmI	CTGGAG	1 cut(s)	666
Bpu1102I	GCTNAGC	1 cut(s)	42
BpuEI	CTTGAG	1 cut(s)	61
BpuMI	CCSGG	2 cut(s)	895, 896
BsaAI	YACGTR	1 cut(s)	712
BsaJI	CCNNGG	2 cut(s)	295, 894
Bsc4I	CCNNNNNNNGG	1 cut(s)	900
Bse21I	CCTNAGG	1 cut(s)	48
Bse3DI	GCAATG	2 cut(s)	225, 618
BseDI	CCNNGG	2 cut(s)	295, 894
BseGI	GGATG	4 cut(s)	68, 187, 310, 534
BseLI	CCNNNNNNNGG	1 cut(s)	900
BseMI	GCAATG	2 cut(s)	225, 618
BseMII	CTCAG	5 cut(s)	39, 56, 357, 553, 609
BseSI	GKGCMC	1 cut(s)	665
BseXI	GCAGC	3 cut(s)	345, 367, 664
Bsh1236I	CGCG	1 cut(s)	498
BshFI	GGCC	6 cut(s)	54, 264, 622, 773, 882, 904
BsiHKCI	CYCGRG	1 cut(s)	894
BsiSI	CCGG	2 cut(s)	895, 905
BslFI	GGGAC	2 cut(s)	348, 476
BslI	CCNNNNNNNGG	1 cut(s)	900
BsmAI	GTCTC	2 cut(s)	59, 641
BsmFI	GGGAC	2 cut(s)	348, 476
BsnI	GGCC	6 cut(s)	54, 264, 622, 773, 882, 904
BsoBI	CYCGRG	1 cut(s)	894
Bsp1286I	GDGCHC	1 cut(s)	665
Bsp143I	GATC	3 cut(s)	222, 389, 430
Bsp1720I	GCTNAGC	1 cut(s)	42
BspACI	CCGC	1 cut(s)	428
BspANI	GGCC	6 cut(s)	54, 264, 622, 773, 882, 904
BspCNI	CTCAG	5 cut(s)	40, 55, 356, 552, 608
BspFNI	CGCG	1 cut(s)	498
BspLI	GGNNCC	3 cut(s)	245, 391, 621
BspPI	GGATC	3 cut(s)	384, 397, 438
BspQI	GCTCTTC	3 cut(s)	90, 439, 710
BsrDI	GCAATG	2 cut(s)	225, 618
BssECI	CCNNGG	2 cut(s)	295, 894
BssMI	GATC	3 cut(s)	222, 389, 430
BssT1I	CCWWGG	1 cut(s)	295
Bst4CI	ACNGT	3 cut(s)	456, 518, 788
Bst6I	CTCTTC	3 cut(s)	90, 439, 710
BstBAI	YACGTR	1 cut(s)	712
BstC8I	GCNNGC	3 cut(s)	211, 279, 496
BstDEI	CTNAG	5 cut(s)	42, 48, 343, 539, 595
BstF5I	GGATG	4 cut(s)	68, 187, 310, 534
BstFNI	CGCG	1 cut(s)	498
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	2 cut(s)	17, 500
BstKTI	GATC	3 cut(s)	225, 392, 433
BstMAI	GTCTC	2 cut(s)	59, 641
BstMBI	GATC	3 cut(s)	222, 389, 430
BstMWI	GCNNNNNNNGC	1 cut(s)	261
BstNSI	RCATGY	1 cut(s)	765
BstSCI	CCNGG	2 cut(s)	893, 894
BstSLI	GKGCMC	1 cut(s)	665
BstUI	CGCG	1 cut(s)	498
BstV1I	GCAGC	3 cut(s)	345, 367, 664
BstX2I	RGATCY	1 cut(s)	389
BstYI	RGATCY	1 cut(s)	389
Bsu36I	CCTNAGG	1 cut(s)	48
BsuRI	GGCC	6 cut(s)	54, 264, 622, 773, 882, 904
BtgZI	GCGATG	1 cut(s)	735
BtsCI	GGATG	4 cut(s)	68, 187, 310, 534
BtsI	GCAGTG	1 cut(s)	337
BtsIMutI	CAGTG	1 cut(s)	337
Cac8I	GCNNGC	3 cut(s)	211, 279, 496
CfoI	GCGC	2 cut(s)	17, 500
Cfr13I	GGNCC	4 cut(s)	52, 620, 772, 880
Cfr9I	CCCGGG	1 cut(s)	894
Csp6I	GTAC	4 cut(s)	197, 452, 688, 709
CviAII	CATG	5 cut(s)	379, 409, 762, 900, 915
CviQI	GTAC	4 cut(s)	197, 452, 688, 709
DdeI	CTNAG	5 cut(s)	42, 48, 343, 539, 595
DpnI	GATC	3 cut(s)	224, 391, 432
DpnII	GATC	3 cut(s)	222, 389, 430
DraI	TTTAAA	1 cut(s)	768
EaeI	YGGCCR	1 cut(s)	902
Eam1104I	CTCTTC	3 cut(s)	90, 439, 710
EarI	CTCTTC	3 cut(s)	90, 439, 710
EciI	GGCGGA	1 cut(s)	443
Eco130I	CCWWGG	1 cut(s)	295
Eco147I	AGGCCT	1 cut(s)	264
Eco47III	AGCGCT	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	672
Eco81I	CCTNAGG	1 cut(s)	48
Eco88I	CYCGRG	1 cut(s)	894
EcoO109I	RGGNCCY	1 cut(s)	772
EcoRI	GAATTC	2 cut(s)	374, 404
EcoT14I	CCWWGG	1 cut(s)	295
EcoT22I	ATGCAT	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	295
FaeI	CATG	5 cut(s)	382, 412, 765, 903, 918
FalI	AAGNNNNNCTT	4 cut(s)	123, 155, 378, 410
FaqI	GGGAC	2 cut(s)	348, 476
FatI	CATG	5 cut(s)	378, 408, 761, 899, 914
FauNDI	CATATG	1 cut(s)	667
FbaI	TGATCA	1 cut(s)	222
Fnu4HI	GCNGC	3 cut(s)	356, 359, 678
FokI	GGATG	4 cut(s)	55, 194, 297, 521
Fsp4HI	GCNGC	3 cut(s)	356, 359, 678
FspBI	CTAG	3 cut(s)	114, 216, 296
GlaI	GCGC	2 cut(s)	16, 499
GluI	GCNGC	3 cut(s)	356, 359, 678
GsuI	CTGGAG	1 cut(s)	666
HaeII	RGCGCY	1 cut(s)	18
HaeIII	GGCC	6 cut(s)	54, 264, 622, 773, 882, 904
HapII	CCGG	2 cut(s)	895, 905
HhaI	GCGC	2 cut(s)	17, 500
Hin1II	CATG	5 cut(s)	382, 412, 765, 903, 918
Hin6I	GCGC	2 cut(s)	15, 498
HinP1I	GCGC	2 cut(s)	15, 498
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HindIII	AAGCTT	2 cut(s)	151, 421
HinfI	GANTC	2 cut(s)	190, 471
HpaII	CCGG	2 cut(s)	895, 905
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	2 cut(s)	289, 521
Hpy188I	TCNGA	4 cut(s)	346, 443, 488, 542
Hpy188III	TCNNGA	4 cut(s)	64, 78, 235, 683
Hpy8I	GTNNAC	2 cut(s)	289, 521
HpyAV	CCTTC	3 cut(s)	125, 210, 294
HpyCH4III	ACNGT	3 cut(s)	456, 518, 788
HpyCH4IV	ACGT	2 cut(s)	690, 711
HpyCH4V	TGCA	4 cut(s)	29, 587, 632, 695
HpyF10VI	GCNNNNNNNGC	1 cut(s)	261
HpyF3I	CTNAG	5 cut(s)	42, 48, 343, 539, 595
HpySE526I	ACGT	2 cut(s)	690, 711
Hsp92II	CATG	5 cut(s)	382, 412, 765, 903, 918
HspAI	GCGC	2 cut(s)	15, 498
Ksp22I	TGATCA	1 cut(s)	222
Kzo9I	GATC	3 cut(s)	222, 389, 430
LguI	GCTCTTC	3 cut(s)	90, 439, 710
LmnI	GCTCC	1 cut(s)	685
Lsp1109I	GCAGC	3 cut(s)	345, 367, 664
LweI	GCATC	2 cut(s)	619, 856
MaeI	CTAG	3 cut(s)	114, 216, 296
MaeII	ACGT	2 cut(s)	690, 711
MaeIII	GTNAC	1 cut(s)	89
MalI	GATC	3 cut(s)	224, 391, 432
MboI	GATC	3 cut(s)	222, 389, 430
MboII	GAAGA	4 cut(s)	107, 456, 727, 783
MflI	RGATCY	1 cut(s)	389
MhlI	GDGCHC	1 cut(s)	665
MluCI	AATT	5 cut(s)	118, 374, 404, 577, 805
MlyI	GAGTC	2 cut(s)	184, 465
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	9 cut(s)	31, 43, 139, 277, 340, 548, 565, 869, 901
Mph1103I	ATGCAT	1 cut(s)	31
MroXI	GAANNNNTTC	1 cut(s)	304
MseI	TTAA	3 cut(s)	267, 324, 767
MslI	CAYNNNNRTG	1 cut(s)	218
MspA1I	CMGCKG	1 cut(s)	358
MspI	CCGG	2 cut(s)	895, 905
MspR9I	CCNGG	2 cut(s)	895, 896
MvnI	CGCG	1 cut(s)	498
MwoI	GCNNNNNNNGC	1 cut(s)	261
NciI	CCSGG	2 cut(s)	895, 896
NdeI	CATATG	1 cut(s)	667
NdeII	GATC	3 cut(s)	222, 389, 430
NlaIII	CATG	5 cut(s)	382, 412, 765, 903, 918
NlaIV	GGNNCC	3 cut(s)	245, 391, 621
NsiI	ATGCAT	1 cut(s)	31
NspI	RCATGY	1 cut(s)	765
PceI	AGGCCT	1 cut(s)	264
PciI	ACATGT	1 cut(s)	761
PciSI	GCTCTTC	3 cut(s)	90, 439, 710
PcsI	WCGNNNNNNNCGW	1 cut(s)	717
PdmI	GAANNNNTTC	1 cut(s)	304
PkrI	GCNGC	3 cut(s)	357, 360, 679
PleI	GAGTC	2 cut(s)	184, 465
PpsI	GAGTC	2 cut(s)	184, 465
Ppu21I	YACGTR	1 cut(s)	712
PscI	ACATGT	1 cut(s)	761
PspN4I	GGNNCC	3 cut(s)	245, 391, 621
PspPI	GGNCC	4 cut(s)	52, 620, 772, 880
PsuI	RGATCY	1 cut(s)	389
PvuII	CAGCTG	1 cut(s)	358
RsaI	GTAC	4 cut(s)	198, 453, 689, 710
RsaNI	GTAC	4 cut(s)	197, 452, 688, 709
RseI	CAYNNNNRTG	1 cut(s)	218
SapI	GCTCTTC	3 cut(s)	90, 439, 710
SaqAI	TTAA	3 cut(s)	267, 324, 767
SatI	GCNGC	3 cut(s)	356, 359, 678
Sau3AI	GATC	3 cut(s)	222, 389, 430
Sau96I	GGNCC	4 cut(s)	52, 620, 772, 880
SchI	GAGTC	2 cut(s)	184, 465
ScrFI	CCNGG	2 cut(s)	895, 896
SduI	GDGCHC	1 cut(s)	665
SfaNI	GCATC	2 cut(s)	619, 856
SmaI	CCCGGG	1 cut(s)	896
SmiMI	CAYNNNNRTG	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	76
SmoI	CTYRAG	1 cut(s)	76
Sse9I	AATT	5 cut(s)	118, 374, 404, 577, 805
SseBI	AGGCCT	1 cut(s)	264
SsiI	CCGC	1 cut(s)	428
SspI	AATATT	1 cut(s)	887
SspMI	CTAG	3 cut(s)	114, 216, 296
StuI	AGGCCT	1 cut(s)	264
StyD4I	CCNGG	2 cut(s)	893, 894
StyI	CCWWGG	1 cut(s)	295
TaaI	ACNGT	3 cut(s)	456, 518, 788
TaiI	ACGT	2 cut(s)	693, 714
TaqI	TCGA	3 cut(s)	63, 750, 813
TasI	AATT	5 cut(s)	118, 374, 404, 577, 805
Tru1I	TTAA	3 cut(s)	267, 324, 767
Tru9I	TTAA	3 cut(s)	267, 324, 767
TscAI	CASTG	1 cut(s)	344
TseI	GCWGC	3 cut(s)	355, 358, 677
TspDTI	ATGAA	6 cut(s)	198, 367, 387, 397, 417, 797
TspMI	CCCGGG	1 cut(s)	894
TspRI	CASTG	1 cut(s)	344
XapI	RAATTY	3 cut(s)	118, 374, 404
XceI	RCATGY	1 cut(s)	765
XmaI	CCCGGG	1 cut(s)	894
XmaJI	CCTAGG	1 cut(s)	295
XmnI	GAANNNNTTC	1 cut(s)	304
XspI	CTAG	3 cut(s)	114, 216, 296
Zsp2I	ATGCAT	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.