Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003491

Physical Location & Seq

Genomic Coordinates Reverse (-)

19495705 .. 19502584

Gene Structure 6880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00347840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGAGGCATCCAACTCAAGAGTTTTCCGTTATGCAGAGTTGAAGGCTGCTACTGGGAATTTCAAGTTAGGCATGTACGGGAGGATGTTCAAGGGCTGGATGGACGAGAATACGCTTGCACCTTCTACGGTTGGCACTGGAATGGTCGTTGCTGTCAAGAGATTTGACCCAGGAAGTATCGAAGACGTTGAACAGTGGCAGAGCGAGGTGCTCGTAGGACAGCTTTCTCATCCCAACCTTGTCAAGCTATTAGGATACTGTATTGAGAAAAAGAGGAAATTCCTAGTTTATGAGTTCGTGGCAAATGGAAGCTTACCTAATCATCTTTTTAGAAAATTCGTCTGGAAGGAACCACTATCTTGGGACAACACACTCAAAATAGCTATTGGAGCTGCTCAGGCTTTAACTTTCTTGCACAGTTCAGAAATCATATACAGAGATGTCAAACCCACAAATATATTACTTGATGGGAATAACAATGCAAAACTTTCAAATTTTCACTTTGCAATATCGAGGCCAGCTGATGAAGAGTTGTATATGGCTTCGGTTCGCGGCACAATGGGCTATATTGATCCAGAATACATGGTAACAGGTCATTTGTCTGTGAAGAGCGATGTGTATAGCTTTGGTGTTGTGCTGCTTCAAATTCTGACAGGGTTAATGGCATGTGATTATACCCGCCCCCAGGAACAAATTAGTCTGGTTGACTGGGCTATACCACTTCTCTCTCATAAAACAAAGTTGCAAACCATTAAGGATGCACGTACGGAGGGCCTGTATTCTTCCCAGGAAGCATCACAGACAGCACAGCTTGCTCTAAAATGTCTAGAAAGAGATCCTGAAAACAGACCTTCCATGATAGAAGTTGTGGAGGGATTGGAACACATTCGGGCAAATCGAACCACTACTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

304

Amino Acids

34.24

Weight (kDa)

6.67

Isoelectric Point (pI)

37.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	24 - 292	1.9e-36	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	45 - 290	6.7e-37	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35600 AT4G35600
fragaria_vesca	FvH4_1g10470 FvH4_1g10470 FvH4_1g10470 FvH4_1g14300 FvH4_1g14300 FvH4_1g15410 FvH4_1g15410 FvH4_1g15410 FvH4_1g15410
malus_domestica	MD02G1117900.v1.1 MD15G1232600.v1.1
prunus_persica	Prupe.7G181500_v2.0.a1
pyrus_communis	pycom02g09150 pycom15g20700
rosa_chinensis	RchiOBHm_Chr2g0097331 RchiOBHm_Chr2g0102961
rosa_laevigata	RLG00000009020 RLG00000016718 RLG00000017194 RLG00000017335
rosa_multiflora	Rmu_sc0000388.1_g000037 Rmu_sc0001060.1_g000013 Rmu_sc0035636.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144760 Rroxscaffold_5G00347840
rosa_rugosa	Rorug02G0065900 Rorug02G0065900 Rorug02G0110700
rosa_samantha	Rh2CG117400 Rh2CG165600 Rh2DG116600
rosa_wichuraiana	Rw2G008810 Rw2G012430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	552
AciI	CCGC	2 cut(s)	552, 679
AclWI	GGATC	2 cut(s)	566, 830
AcsI	RAATTY	5 cut(s)	58, 278, 335, 493, 645
AfaI	GTAC	2 cut(s)	77, 766
AfiI	CCNNNNNNNGG	1 cut(s)	685
AgsI	TTSAA	6 cut(s)	43, 64, 91, 191, 492, 644
AjnI	CCWGG	3 cut(s)	169, 684, 786
AluBI	AGCT	8 cut(s)	223, 247, 312, 383, 392, 521, 624, 811
AluI	AGCT	8 cut(s)	223, 247, 312, 383, 392, 521, 624, 811
Alw21I	GWGCWC	1 cut(s)	213
AlwI	GGATC	2 cut(s)	566, 830
AoxI	GGCC	2 cut(s)	515, 772
ApeKI	GCWGC	3 cut(s)	47, 392, 637
ApoI	RAATTY	5 cut(s)	58, 278, 335, 493, 645
Asp700I	GAANNNNTTC	1 cut(s)	885
AspS9I	GGNCC	1 cut(s)	772
BbsI	GAAGAC	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	3 cut(s)	34, 379, 624
BccI	CCATC	2 cut(s)	94, 461
BciT130I	CCWGG	3 cut(s)	171, 686, 788
BciVI	GTATCC	1 cut(s)	248
BfaI	CTAG	2 cut(s)	284, 827
BfuI	GTATCC	1 cut(s)	248
BisI	GCNGC	4 cut(s)	48, 393, 553, 638
BlsI	GCNGC	4 cut(s)	49, 394, 554, 639
Bme1390I	CCNGG	3 cut(s)	171, 686, 788
BmgT120I	GGNCC	1 cut(s)	772
BmiI	GGNNCC	1 cut(s)	351
BmrFI	CCNGG	3 cut(s)	171, 686, 788
BmrI	ACTGGG	2 cut(s)	63, 718
BmsI	GCATC	3 cut(s)	17, 748, 803
BmuI	ACTGGG	2 cut(s)	63, 718
BpiI	GAAGAC	1 cut(s)	189
Bpu10I	CCTNAGC	1 cut(s)	396
BsaAI	YACGTR	1 cut(s)	764
BsaJI	CCNNGG	3 cut(s)	169, 684, 786
BsaXI	ACNNNNNCTCC	2 cut(s)	761, 791
Bsc4I	CCNNNNNNNGG	1 cut(s)	685
Bse1I	ACTGG	3 cut(s)	58, 142, 713
BseBI	CCWGG	3 cut(s)	171, 686, 788
BseDI	CCNNGG	3 cut(s)	169, 684, 786
BseGI	GGATG	5 cut(s)	8, 90, 105, 229, 763
BseLI	CCNNNNNNNGG	1 cut(s)	685
BseMII	CTCAG	1 cut(s)	410
BseNI	ACTGG	3 cut(s)	58, 142, 713
BseXI	GCAGC	3 cut(s)	34, 379, 624
Bsh1236I	CGCG	1 cut(s)	552
BshFI	GGCC	2 cut(s)	517, 774
BsiHKAI	GWGCWC	1 cut(s)	213
BsiWI	CGTACG	1 cut(s)	764
BslFI	GGGAC	1 cut(s)	377
BslI	CCNNNNNNNGG	1 cut(s)	685
BsmFI	GGGAC	1 cut(s)	377
BsnI	GGCC	2 cut(s)	517, 774
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	2 cut(s)	571, 835
BspACI	CCGC	2 cut(s)	552, 679
BspANI	GGCC	2 cut(s)	517, 774
BspCNI	CTCAG	1 cut(s)	409
BspFNI	CGCG	1 cut(s)	552
BspLI	GGNNCC	1 cut(s)	351
BspPI	GGATC	2 cut(s)	566, 830
BspQI	GCTCTTC	1 cut(s)	602
BsrI	ACTGG	3 cut(s)	58, 142, 713
BssECI	CCNNGG	3 cut(s)	169, 684, 786
BssMI	GATC	2 cut(s)	571, 835
Bst2UI	CCWGG	3 cut(s)	171, 686, 788
Bst4CI	ACNGT	4 cut(s)	130, 195, 260, 419
Bst6I	CTCTTC	2 cut(s)	522, 602
BstAPI	GCANNNNNTGC	1 cut(s)	812
BstBAI	YACGTR	1 cut(s)	764
BstC8I	GCNNGC	3 cut(s)	117, 519, 813
BstDEI	CTNAG	1 cut(s)	396
BstF5I	GGATG	5 cut(s)	8, 90, 105, 229, 763
BstFNI	CGCG	1 cut(s)	552
BstKTI	GATC	2 cut(s)	574, 838
BstMBI	GATC	2 cut(s)	571, 835
BstMWI	GCNNNNNNNGC	4 cut(s)	389, 398, 561, 812
BstNI	CCWGG	3 cut(s)	171, 686, 788
BstNSI	RCATGY	2 cut(s)	76, 669
BstSCI	CCNGG	3 cut(s)	169, 684, 786
BstUI	CGCG	1 cut(s)	552
BstV1I	GCAGC	3 cut(s)	34, 379, 624
BstV2I	GAAGAC	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	835
BstXI	CCANNNNNNTGG	1 cut(s)	360
BstYI	RGATCY	1 cut(s)	835
BsuI	GTATCC	1 cut(s)	248
BsuRI	GGCC	2 cut(s)	517, 774
BtgZI	GCGATG	1 cut(s)	627
BtsCI	GGATG	5 cut(s)	8, 90, 105, 229, 763
BtsIMutI	CAGTG	2 cut(s)	135, 200
Cac8I	GCNNGC	3 cut(s)	117, 519, 813
Cfr13I	GGNCC	1 cut(s)	772
Csp6I	GTAC	2 cut(s)	76, 765
CviAII	CATG	4 cut(s)	73, 583, 666, 856
CviQI	GTAC	2 cut(s)	76, 765
DdeI	CTNAG	1 cut(s)	396
DpnI	GATC	2 cut(s)	573, 837
DpnII	GATC	2 cut(s)	571, 835
Eam1104I	CTCTTC	2 cut(s)	522, 602
EarI	CTCTTC	2 cut(s)	522, 602
EcoO109I	RGGNCCY	1 cut(s)	772
EcoRII	CCWGG	3 cut(s)	169, 684, 786
FaeI	CATG	4 cut(s)	76, 586, 669, 859
FaqI	GGGAC	1 cut(s)	377
FatI	CATG	4 cut(s)	72, 582, 665, 855
FauI	CCCGC	1 cut(s)	686
Fnu4HI	GCNGC	4 cut(s)	48, 393, 553, 638
FokI	GGATG	4 cut(s)	97, 112, 216, 770
Fsp4HI	GCNGC	4 cut(s)	48, 393, 553, 638
FspBI	CTAG	2 cut(s)	284, 827
GluI	GCNGC	4 cut(s)	48, 393, 553, 638
HaeIII	GGCC	2 cut(s)	517, 774
Hin1II	CATG	4 cut(s)	76, 586, 669, 859
HincII	GTYRAC	1 cut(s)	706
HindII	GTYRAC	1 cut(s)	706
HindIII	AAGCTT	1 cut(s)	310
Hpy166II	GTNNAC	1 cut(s)	706
Hpy188I	TCNGA	2 cut(s)	424, 651
Hpy188III	TCNNGA	6 cut(s)	18, 157, 343, 575, 827, 839
Hpy8I	GTNNAC	1 cut(s)	706
HpyAV	CCTTC	4 cut(s)	37, 132, 340, 861
HpyCH4III	ACNGT	4 cut(s)	130, 195, 260, 419
HpyCH4IV	ACGT	2 cut(s)	186, 763
HpyCH4V	TGCA	7 cut(s)	35, 119, 415, 482, 506, 745, 761
HpyF10VI	GCNNNNNNNGC	4 cut(s)	389, 398, 561, 812
HpyF3I	CTNAG	1 cut(s)	396
HpySE526I	ACGT	2 cut(s)	186, 763
Hsp92II	CATG	4 cut(s)	76, 586, 669, 859
Kzo9I	GATC	2 cut(s)	571, 835
LguI	GCTCTTC	1 cut(s)	602
LmnI	GCTCC	1 cut(s)	389
Lsp1109I	GCAGC	3 cut(s)	34, 379, 624
LweI	GCATC	3 cut(s)	17, 748, 803
MaeI	CTAG	2 cut(s)	284, 827
MaeII	ACGT	2 cut(s)	186, 763
MaeIII	GTNAC	1 cut(s)	586
MalI	GATC	2 cut(s)	573, 837
MboI	GATC	2 cut(s)	571, 835
MboII	GAAGA	4 cut(s)	194, 539, 619, 774
MflI	RGATCY	1 cut(s)	835
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	6 cut(s)	58, 278, 335, 493, 645, 693
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	6 cut(s)	75, 199, 267, 507, 763, 865
MroXI	GAANNNNTTC	1 cut(s)	885
MseI	TTAA	3 cut(s)	404, 659, 753
MslI	CAYNNNNRTG	1 cut(s)	140
MspA1I	CMGCKG	1 cut(s)	521
MspR9I	CCNGG	3 cut(s)	171, 686, 788
MvaI	CCWGG	3 cut(s)	171, 686, 788
MvnI	CGCG	1 cut(s)	552
MwoI	GCNNNNNNNGC	4 cut(s)	389, 398, 561, 812
NdeII	GATC	2 cut(s)	571, 835
NlaIII	CATG	4 cut(s)	76, 586, 669, 859
NlaIV	GGNNCC	1 cut(s)	351
NspI	RCATGY	2 cut(s)	76, 669
PciSI	GCTCTTC	1 cut(s)	602
PcsI	WCGNNNNNNNCGW	1 cut(s)	895
PdmI	GAANNNNTTC	1 cut(s)	885
Pfl23II	CGTACG	1 cut(s)	764
PkrI	GCNGC	4 cut(s)	49, 394, 554, 639
Ppu21I	YACGTR	1 cut(s)	764
Psp6I	CCWGG	3 cut(s)	169, 684, 786
PspGI	CCWGG	3 cut(s)	169, 684, 786
PspLI	CGTACG	1 cut(s)	764
PspN4I	GGNNCC	1 cut(s)	351
PspPI	GGNCC	1 cut(s)	772
PsuI	RGATCY	1 cut(s)	835
PvuII	CAGCTG	1 cut(s)	521
RsaI	GTAC	2 cut(s)	77, 766
RsaNI	GTAC	2 cut(s)	76, 765
RseI	CAYNNNNRTG	1 cut(s)	140
SapI	GCTCTTC	1 cut(s)	602
SaqAI	TTAA	3 cut(s)	404, 659, 753
SatI	GCNGC	4 cut(s)	48, 393, 553, 638
Sau3AI	GATC	2 cut(s)	571, 835
Sau96I	GGNCC	1 cut(s)	772
ScrFI	CCNGG	3 cut(s)	171, 686, 788
SduI	GDGCHC	1 cut(s)	213
SfaNI	GCATC	3 cut(s)	17, 748, 803
SmiMI	CAYNNNNRTG	1 cut(s)	140
SmlI	CTYRAG	1 cut(s)	16
SmoI	CTYRAG	1 cut(s)	16
Sse9I	AATT	6 cut(s)	58, 278, 335, 493, 645, 693
SsiI	CCGC	2 cut(s)	552, 679
SspMI	CTAG	2 cut(s)	284, 827
StyD4I	CCNGG	3 cut(s)	169, 684, 786
TaaI	ACNGT	4 cut(s)	130, 195, 260, 419
TaiI	ACGT	2 cut(s)	189, 766
TaqI	TCGA	3 cut(s)	180, 512, 898
TasI	AATT	6 cut(s)	58, 278, 335, 493, 645, 693
TauI	GCSGC	1 cut(s)	555
Tru1I	TTAA	3 cut(s)	404, 659, 753
Tru9I	TTAA	3 cut(s)	404, 659, 753
TscAI	CASTG	2 cut(s)	142, 200
TseI	GCWGC	3 cut(s)	47, 392, 637
TspDTI	ATGAA	1 cut(s)	540
TspGWI	ACGGA	2 cut(s)	17, 782
TspRI	CASTG	2 cut(s)	142, 200
XapI	RAATTY	5 cut(s)	58, 278, 335, 493, 645
XbaI	TCTAGA	1 cut(s)	826
XceI	RCATGY	2 cut(s)	76, 669
XmnI	GAANNNNTTC	1 cut(s)	885
XspI	CTAG	2 cut(s)	284, 827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.