Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003491

Physical Location & Seq

Genomic Coordinates Reverse (-)

82667687 .. 82671151

Gene Structure 3465 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00144760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGGTATCTGCTTTGGATCTCCTGCTAGTCTCCCTAACACCATCACAACATCAACTACAGGGACAATTGAAATTCACAGCAGGAATAGAGTTTCACAGACAAGCAGCAGCACAATAAGAAGTCAATTTTCTCATTTTTCAGAAGCAACAACATCAACACTAAGCCCAAGATTTGATGATGATCAGCAGTCAACGGATGGTGAAATTTTGGAGACATCAACTTTGAGAGTTTTCAGTTTTGCAGATATGAAATCTGCTACCAAGAACTTCAAGTCAGATCAAATTCTGGGTGAGGGAGGATTTGGTAGGGTTTTCAAAGGTTGGGTGGATGAGAAAACTCTTCAACCATGTAAGGCTGGCACTGGAATGATGGTTGCTGTCAAGAAATTAAACCCAGAAAGTATGCAAGGTTTCCAAGAGTGGCAGTCAGAAGTGAACTTTCTAGGAAGGCTTTCTCATCCCAACCTTGTCAAGCTATTGGGATACTGTTGGGAAGACACGGAGCTACTCCTTGTTTATGAGTTCATGCAGAAAGATTTTGGCTTGGCGAAATTGGGACCAACTGGTGGAGACTCACATGTGTCAACTAGAGTTATGGGGACATATGGTTATGCTGCTCCAGAATACATTGCAACAGGTCATTTGTATGTGAAAAGCGACGTGTATGGTTTCGGTGTTGTGCTGCTTGAAATTCTGACAGGGTTACGAGCACTCGATACAAAACGCCCTAAGGAGCAACTTAATCTGGTGGACTGGGCTAAACCACTTCTTCCTCATCGAAGAAAGTTAAAAACCATTATGGATGCAAGGATGGAGGGCCAATATTCCTTCAAGGCAGCATTACAGACAGCAAATATTACTCTAAAATGCCTGGCGCCAGATCCTAAAAGCCGGCCTTCCATGAAAGAAGTCTTGGAAGAACTGGAACAGGTTCAGGCAATCAGAGAAAAACCAAAGCCATCATTACTAATTACCTCTAGGCAAACTACTTCTATTGCTCGATCCTATGTACTTCAAGAGCCTGTTCGTCGTTCCCCGCTTCACTCCAGGTACCAAGCCACCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

355

Amino Acids

39.6

Weight (kDa)

9.0

Isoelectric Point (pI)

42.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	91 - 178	4.3e-10	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	92 - 177	2.4e-14	Protein tyrosine and serine/threonine kinase
PK_Tyr_Ser-Thr	PF07714	179 - 308	1.6e-10	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	179 - 306	1.5e-12	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35600 AT4G35600
fragaria_vesca	FvH4_1g10470 FvH4_1g10470 FvH4_1g10470 FvH4_1g14300 FvH4_1g14300 FvH4_1g15410 FvH4_1g15410 FvH4_1g15410 FvH4_1g15410
malus_domestica	MD02G1117900.v1.1 MD15G1232600.v1.1
prunus_persica	Prupe.7G181500_v2.0.a1
pyrus_communis	pycom02g09150 pycom15g20700
rosa_chinensis	RchiOBHm_Chr2g0097331 RchiOBHm_Chr2g0102961
rosa_laevigata	RLG00000009020 RLG00000016718 RLG00000017194 RLG00000017335
rosa_multiflora	Rmu_sc0000388.1_g000037 Rmu_sc0001060.1_g000013 Rmu_sc0035636.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144760 Rroxscaffold_5G00347840
rosa_rugosa	Rorug02G0065900 Rorug02G0065900 Rorug02G0110700
rosa_samantha	Rh2CG117400 Rh2CG165600 Rh2DG116600
rosa_wichuraiana	Rw2G008810 Rw2G012430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1050
AccB1I	GGYRCC	2 cut(s)	874, 1050
AccB7I	CCANNNNNTGG	1 cut(s)	566
AciI	CCGC	1 cut(s)	1037
AclWI	GGATC	3 cut(s)	25, 875, 996
AcsI	RAATTY	4 cut(s)	72, 204, 282, 690
AcyI	GRCGYC	1 cut(s)	875
AfaI	GTAC	2 cut(s)	1011, 1052
AfiI	CCNNNNNNNGG	1 cut(s)	566
AflIII	ACRYGT	2 cut(s)	577, 660
AgsI	TTSAA	7 cut(s)	71, 271, 316, 344, 689, 832, 1016
AjiI	CACGTC	1 cut(s)	661
AjnI	CCWGG	2 cut(s)	870, 1046
AjuI	GAANNNNNNNTTGG	2 cut(s)	896, 928
AluBI	AGCT	2 cut(s)	475, 505
AluI	AGCT	2 cut(s)	475, 505
Alw21I	GWGCWC	1 cut(s)	712
Alw26I	GTCTC	3 cut(s)	35, 206, 564
AlwI	GGATC	3 cut(s)	25, 875, 996
AoxI	GGCC	2 cut(s)	817, 893
ApeKI	GCWGC	5 cut(s)	105, 108, 614, 682, 836
ApoI	RAATTY	4 cut(s)	72, 204, 282, 690
ArsI	GACNNNNNNTTYG	2 cut(s)	205, 237
Asp700I	GAANNNNTTC	2 cut(s)	451, 930
Asp718I	GGTACC	1 cut(s)	1050
AspLEI	GCGC	1 cut(s)	877
AspS9I	GGNCC	2 cut(s)	557, 817
AsuHPI	GGTGA	2 cut(s)	212, 302
AvaII	GGWCC	1 cut(s)	557
AxyI	CCTNAGG	1 cut(s)	729
BanI	GGYRCC	2 cut(s)	874, 1050
BbsI	GAAGAC	1 cut(s)	501
Bbv12I	GWGCWC	1 cut(s)	712
BbvI	GCAGC	5 cut(s)	117, 120, 601, 669, 848
BccI	CCATC	5 cut(s)	50, 191, 364, 805, 967
BciT130I	CCWGG	2 cut(s)	872, 1048
BciVI	GTATCC	1 cut(s)	476
BclI	TGATCA	1 cut(s)	181
BcoDI	GTCTC	3 cut(s)	35, 206, 564
BfaI	CTAG	4 cut(s)	27, 443, 588, 978
BfmI	CTRYAG	1 cut(s)	57
BfoI	RGCGCY	1 cut(s)	878
BfuI	GTATCC	1 cut(s)	476
BisI	GCNGC	5 cut(s)	106, 109, 615, 683, 837
BlsI	GCNGC	5 cut(s)	107, 110, 616, 684, 838
Bme1390I	CCNGG	2 cut(s)	872, 1048
Bme18I	GGWCC	1 cut(s)	557
BmgBI	CACGTC	1 cut(s)	661
BmgT120I	GGNCC	2 cut(s)	557, 817
BmiI	GGNNCC	3 cut(s)	558, 876, 1052
BmrFI	CCNGG	2 cut(s)	872, 1048
BmrI	ACTGGG	1 cut(s)	763
BmsI	GCATC	1 cut(s)	793
BmuI	ACTGGG	1 cut(s)	763
BpiI	GAAGAC	1 cut(s)	501
BpmI	CTGGAG	2 cut(s)	603, 1030
BsaBI	GATNNNNATC	1 cut(s)	180
BsaHI	GRCGYC	1 cut(s)	875
Bsc4I	CCNNNNNNNGG	1 cut(s)	566
Bse118I	RCCGGY	1 cut(s)	891
Bse1I	ACTGG	4 cut(s)	367, 568, 758, 927
Bse21I	CCTNAGG	1 cut(s)	729
Bse3DI	GCAATG	1 cut(s)	627
Bse8I	GATNNNNATC	1 cut(s)	180
BseBI	CCWGG	2 cut(s)	872, 1048
BseGI	GGATG	5 cut(s)	202, 334, 457, 808, 816
BseJI	GATNNNNATC	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	566
BseMI	GCAATG	1 cut(s)	627
BseNI	ACTGG	4 cut(s)	367, 568, 758, 927
BseXI	GCAGC	5 cut(s)	117, 120, 601, 669, 848
BshFI	GGCC	2 cut(s)	819, 895
BshNI	GGYRCC	2 cut(s)	874, 1050
BsiHKAI	GWGCWC	1 cut(s)	712
BsiSI	CCGG	1 cut(s)	892
BslFI	GGGAC	3 cut(s)	76, 570, 613
BslI	CCNNNNNNNGG	1 cut(s)	566
BsmAI	GTCTC	3 cut(s)	35, 206, 564
BsmFI	GGGAC	3 cut(s)	76, 570, 613
BsnI	GGCC	2 cut(s)	819, 895
Bsp1286I	GDGCHC	1 cut(s)	712
Bsp143I	GATC	5 cut(s)	17, 181, 277, 880, 1001
BspACI	CCGC	1 cut(s)	1037
BspANI	GGCC	2 cut(s)	819, 895
BspLI	GGNNCC	3 cut(s)	558, 876, 1052
BspPI	GGATC	3 cut(s)	25, 875, 996
BspT107I	GGYRCC	2 cut(s)	874, 1050
BsrDI	GCAATG	1 cut(s)	627
BsrFI	RCCGGY	1 cut(s)	891
BsrI	ACTGG	4 cut(s)	367, 568, 758, 927
BssAI	RCCGGY	1 cut(s)	891
BssMI	GATC	5 cut(s)	17, 181, 277, 880, 1001
BssNI	GRCGYC	1 cut(s)	875
Bst2UI	CCWGG	2 cut(s)	872, 1048
Bst4CI	ACNGT	1 cut(s)	488
Bst6I	CTCTTC	1 cut(s)	345
BstACI	GRCGYC	1 cut(s)	875
BstC8I	GCNNGC	2 cut(s)	358, 893
BstDEI	CTNAG	2 cut(s)	161, 729
BstF5I	GGATG	5 cut(s)	202, 334, 457, 808, 816
BstH2I	RGCGCY	1 cut(s)	878
BstHHI	GCGC	1 cut(s)	877
BstKTI	GATC	5 cut(s)	20, 184, 280, 883, 1004
BstMAI	GTCTC	3 cut(s)	35, 206, 564
BstMBI	GATC	5 cut(s)	17, 181, 277, 880, 1001
BstNI	CCWGG	2 cut(s)	872, 1048
BstNSI	RCATGY	1 cut(s)	581
BstSCI	CCNGG	2 cut(s)	870, 1046
BstSFI	CTRYAG	1 cut(s)	57
BstV1I	GCAGC	5 cut(s)	117, 120, 601, 669, 848
BstV2I	GAAGAC	1 cut(s)	501
BstX2I	RGATCY	2 cut(s)	17, 880
BstYI	RGATCY	2 cut(s)	17, 880
Bsu36I	CCTNAGG	1 cut(s)	729
BsuI	GTATCC	1 cut(s)	476
BsuRI	GGCC	2 cut(s)	819, 895
BtrI	CACGTC	1 cut(s)	661
BtsCI	GGATG	5 cut(s)	202, 334, 457, 808, 816
BtsIMutI	CAGTG	1 cut(s)	360
Cac8I	GCNNGC	2 cut(s)	358, 893
CfoI	GCGC	1 cut(s)	877
Cfr10I	RCCGGY	1 cut(s)	891
Cfr13I	GGNCC	2 cut(s)	557, 817
Csp6I	GTAC	2 cut(s)	1010, 1051
CviAII	CATG	5 cut(s)	348, 526, 578, 901, 1065
CviQI	GTAC	2 cut(s)	1010, 1051
DdeI	CTNAG	2 cut(s)	161, 729
DinI	GGCGCC	1 cut(s)	876
DpnI	GATC	5 cut(s)	19, 183, 279, 882, 1003
DpnII	GATC	5 cut(s)	17, 181, 277, 880, 1001
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Eco47I	GGWCC	1 cut(s)	557
Eco81I	CCTNAGG	1 cut(s)	729
EcoRII	CCWGG	2 cut(s)	870, 1046
EgeI	GGCGCC	1 cut(s)	876
EheI	GGCGCC	1 cut(s)	876
FaeI	CATG	5 cut(s)	351, 529, 581, 904, 1068
FalI	AAGNNNNNCTT	2 cut(s)	880, 912
FaqI	GGGAC	3 cut(s)	76, 570, 613
FatI	CATG	5 cut(s)	347, 525, 577, 900, 1064
FauI	CCCGC	1 cut(s)	1044
FauNDI	CATATG	1 cut(s)	604
FbaI	TGATCA	1 cut(s)	181
Fnu4HI	GCNGC	5 cut(s)	106, 109, 615, 683, 837
FokI	GGATG	5 cut(s)	209, 341, 444, 815, 823
Fsp4HI	GCNGC	5 cut(s)	106, 109, 615, 683, 837
FspBI	CTAG	4 cut(s)	27, 443, 588, 978
GlaI	GCGC	1 cut(s)	876
GluI	GCNGC	5 cut(s)	106, 109, 615, 683, 837
GsuI	CTGGAG	2 cut(s)	603, 1030
HaeII	RGCGCY	1 cut(s)	878
HaeIII	GGCC	2 cut(s)	819, 895
HapII	CCGG	1 cut(s)	892
HhaI	GCGC	1 cut(s)	877
Hin1I	GRCGYC	1 cut(s)	875
Hin1II	CATG	5 cut(s)	351, 529, 581, 904, 1068
Hin6I	GCGC	1 cut(s)	875
HinP1I	GCGC	1 cut(s)	875
HincII	GTYRAC	2 cut(s)	192, 585
HindII	GTYRAC	2 cut(s)	192, 585
HinfI	GANTC	1 cut(s)	572
HpaII	CCGG	1 cut(s)	892
HphI	GGTGA	2 cut(s)	212, 302
Hpy166II	GTNNAC	4 cut(s)	192, 436, 585, 751
Hpy188I	TCNGA	5 cut(s)	142, 277, 430, 696, 944
Hpy188III	TCNNGA	3 cut(s)	382, 620, 1016
Hpy8I	GTNNAC	4 cut(s)	192, 436, 585, 751
Hpy99I	CGWCG	2 cut(s)	662, 1032
HpyAV	CCTTC	3 cut(s)	441, 838, 906
HpyCH4III	ACNGT	1 cut(s)	488
HpyCH4IV	ACGT	1 cut(s)	660
HpyCH4V	TGCA	5 cut(s)	242, 406, 529, 632, 806
HpyF3I	CTNAG	2 cut(s)	161, 729
HpySE526I	ACGT	1 cut(s)	660
Hsp92I	GRCGYC	1 cut(s)	875
Hsp92II	CATG	5 cut(s)	351, 529, 581, 904, 1068
HspAI	GCGC	1 cut(s)	875
KasI	GGCGCC	1 cut(s)	874
KpnI	GGTACC	1 cut(s)	1054
KroI	GCCGGC	1 cut(s)	891
KroNI	GCCGGC	1 cut(s)	893
Ksp22I	TGATCA	1 cut(s)	181
Kzo9I	GATC	5 cut(s)	17, 181, 277, 880, 1001
LmnI	GCTCC	3 cut(s)	502, 622, 733
Lsp1109I	GCAGC	5 cut(s)	117, 120, 601, 669, 848
LweI	GCATC	1 cut(s)	793
MaeI	CTAG	4 cut(s)	27, 443, 588, 978
MaeII	ACGT	1 cut(s)	660
MaeIII	GTNAC	1 cut(s)	702
MalI	GATC	5 cut(s)	19, 183, 279, 882, 1003
MboI	GATC	5 cut(s)	17, 181, 277, 880, 1001
MboII	GAAGA	5 cut(s)	332, 506, 761, 792, 929
MfeI	CAATTG	1 cut(s)	66
MflI	RGATCY	2 cut(s)	17, 880
MhlI	GDGCHC	1 cut(s)	712
MluCI	AATT	9 cut(s)	66, 72, 125, 204, 282, 386, 551, 690, 969
Mly113I	GGCGCC	1 cut(s)	875
MlyI	GAGTC	1 cut(s)	566
MnlI	CCTC	5 cut(s)	286, 290, 783, 808, 985
MroNI	GCCGGC	1 cut(s)	891
MroXI	GAANNNNTTC	2 cut(s)	451, 930
MseI	TTAA	3 cut(s)	389, 741, 788
MslI	CAYNNNNRTG	2 cut(s)	365, 645
MspI	CCGG	1 cut(s)	892
MspR9I	CCNGG	2 cut(s)	872, 1048
MunI	CAATTG	1 cut(s)	66
MvaI	CCWGG	2 cut(s)	872, 1048
NaeI	GCCGGC	1 cut(s)	893
NarI	GGCGCC	1 cut(s)	875
NdeI	CATATG	1 cut(s)	604
NdeII	GATC	5 cut(s)	17, 181, 277, 880, 1001
NgoMIV	GCCGGC	1 cut(s)	891
NlaIII	CATG	5 cut(s)	351, 529, 581, 904, 1068
NlaIV	GGNNCC	3 cut(s)	558, 876, 1052
NspI	RCATGY	1 cut(s)	581
PciI	ACATGT	1 cut(s)	577
PdiI	GCCGGC	1 cut(s)	893
PdmI	GAANNNNTTC	2 cut(s)	451, 930
PflMI	CCANNNNNTGG	1 cut(s)	566
PkrI	GCNGC	5 cut(s)	107, 110, 616, 684, 838
PleI	GAGTC	1 cut(s)	566
PluTI	GGCGCC	1 cut(s)	878
PpsI	GAGTC	1 cut(s)	566
PscI	ACATGT	1 cut(s)	577
Psp6I	CCWGG	2 cut(s)	870, 1046
PspGI	CCWGG	2 cut(s)	870, 1046
PspN4I	GGNNCC	3 cut(s)	558, 876, 1052
PspPI	GGNCC	2 cut(s)	557, 817
PsuI	RGATCY	2 cut(s)	17, 880
RsaI	GTAC	2 cut(s)	1011, 1052
RsaNI	GTAC	2 cut(s)	1010, 1051
RseI	CAYNNNNRTG	2 cut(s)	365, 645
SaqAI	TTAA	3 cut(s)	389, 741, 788
SatI	GCNGC	5 cut(s)	106, 109, 615, 683, 837
Sau3AI	GATC	5 cut(s)	17, 181, 277, 880, 1001
Sau96I	GGNCC	2 cut(s)	557, 817
SchI	GAGTC	1 cut(s)	566
ScrFI	CCNGG	2 cut(s)	872, 1048
SduI	GDGCHC	1 cut(s)	712
SfaNI	GCATC	1 cut(s)	793
SfcI	CTRYAG	1 cut(s)	57
SfoI	GGCGCC	1 cut(s)	876
SinI	GGWCC	1 cut(s)	557
SmiMI	CAYNNNNRTG	2 cut(s)	365, 645
Sse9I	AATT	9 cut(s)	66, 72, 125, 204, 282, 386, 551, 690, 969
SsiI	CCGC	1 cut(s)	1037
SspDI	GGCGCC	1 cut(s)	874
SspI	AATATT	2 cut(s)	824, 856
SspMI	CTAG	4 cut(s)	27, 443, 588, 978
StyD4I	CCNGG	2 cut(s)	870, 1046
TaaI	ACNGT	1 cut(s)	488
TaiI	ACGT	1 cut(s)	663
TaqI	TCGA	3 cut(s)	714, 778, 1000
TasI	AATT	9 cut(s)	66, 72, 125, 204, 282, 386, 551, 690, 969
TatI	WGTACW	1 cut(s)	1009
Tru1I	TTAA	3 cut(s)	389, 741, 788
Tru9I	TTAA	3 cut(s)	389, 741, 788
TscAI	CASTG	1 cut(s)	367
TseI	GCWGC	5 cut(s)	105, 108, 614, 682, 836
TspDTI	ATGAA	3 cut(s)	263, 514, 917
TspGWI	ACGGA	2 cut(s)	209, 515
TspRI	CASTG	1 cut(s)	367
Van91I	CCANNNNNTGG	1 cut(s)	566
VpaK11BI	GGWCC	1 cut(s)	557
XapI	RAATTY	4 cut(s)	72, 204, 282, 690
XceI	RCATGY	1 cut(s)	581
XmnI	GAANNNNTTC	2 cut(s)	451, 930
XspI	CTAG	4 cut(s)	27, 443, 588, 978

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.