Rmu_sc0001060.1_g000013
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001060.1
Physical Location & Seq
Reverse (-)
51541 .. 54311
2771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001060.1_g000013.1.cds

Sequence Viewer

Length: 1260 bp
atgggtatctgctttggatctcctgctactctccctaacaccatcacaacgtcaactacagggacaattgaaattcacagcaggaatagagtttcacagacaagcagcagcacaatgagaagtcaattttctcatttttcagaagcaacaacatcaacactaagcccaagatttgatgatgatcaggagtcaacggatggcgaaattttggagacatcaactttgagagtcttcagttttgcagatatgaaatctgctaccaagaacttcaagtcagatcaaattctgggtgagggaggatttggtagagttttcaaaggttgggtggatgagaaaactcttcaaccatgtaaggctggcactggaatgatggttgctgtcaagaaattaaaccctgaaagtatgcaaggtttccaagagtggcagtcagaagtgaactttctaggaaggctttctcatcccaaccttgtcaagctattgggatactgttgggaagacacggaactactccttgtttatgagttcatgcagaaaggtagcttggagaatcaccttttcagaaggaatcctaacattgaaccactatcttgggacattagaatcagaatagctattggagcagctcgaggcctagcattcttgcacagttcagaaaagcaaatcatatatagagatttcaaggcctcaaatatattgcttgatgggaattataatgcaaaaatctcagattttggcttggcgaaattgggaccaactggtggagactcacatgtgtcaactagagttatggggacatatggttatgctgctccagaatacattgcaacaggtcatttgtatgtgaagagcgacgtgtatggtttcggtgttgtgctgcttgaaattctgacagggttacgagcactcgatacaaaacgccctaaggagcaacttaatctggtggactgggctaaaccacttcttcctcatcgaagaaagttaaaaacgattatggatgcaaggatggagggccaatattccttcaaggcagcattacagacagcaaatattactctaaaatgcctggcgccagatcctaaaagccggccttccatgaaagaagtcttggaagaactggaacaggttcaggcaatcagagaaaaaccaaagccatcattactaattacctctaggcaaactacttctattactcgatcctatgtacttcaagagcctattcgtcgttccccgcttcactctaggtaccaagccactacatga

Protein Analysis

419

Amino Acids

46.96

Weight (kDa)

9.14

Isoelectric Point (pI)

41.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 711
Acc65I GGTACC 1 cut(s) 1242
AccB1I GGYRCC 2 cut(s) 1066, 1242
AccB7I CCANNNNNTGG 1 cut(s) 758
AciI CCGC 1 cut(s) 1229
AclWI GGATC 3 cut(s) 25, 1067, 1188
AcsI RAATTY 4 cut(s) 72, 204, 282, 882
AcuI CTGAAG 1 cut(s) 217
AcyI GRCGYC 1 cut(s) 1067
AfaI GTAC 2 cut(s) 1203, 1244
AfiI CCNNNNNNNGG 1 cut(s) 758
AflIII ACRYGT 2 cut(s) 769, 852
AgsI TTSAA 9 cut(s) 71, 271, 316, 344, 578, 679, 881, 1024, 1208
AjiI CACGTC 1 cut(s) 853
AjnI CCWGG 1 cut(s) 1062
AjuI GAANNNNNNNTTGG 4 cut(s) 524, 556, 1088, 1120
AluBI AGCT 4 cut(s) 475, 540, 611, 623
AluI AGCT 4 cut(s) 475, 540, 611, 623
Alw21I GWGCWC 1 cut(s) 904
Alw26I GTCTC 2 cut(s) 206, 756
AlwI GGATC 3 cut(s) 25, 1067, 1188
Ama87I CYCGRG 1 cut(s) 624
AoxI GGCC 4 cut(s) 628, 681, 1009, 1085
ApeKI GCWGC 6 cut(s) 105, 108, 620, 806, 874, 1028
ApoI RAATTY 4 cut(s) 72, 204, 282, 882
ArsI GACNNNNNNTTYG 2 cut(s) 205, 237
Asp700I GAANNNNTTC 2 cut(s) 451, 1122
Asp718I GGTACC 1 cut(s) 1242
AspLEI GCGC 1 cut(s) 1069
AspS9I GGNCC 2 cut(s) 749, 1009
AsuHPI GGTGA 2 cut(s) 302, 542
AvaI CYCGRG 1 cut(s) 624
AvaII GGWCC 1 cut(s) 749
AxyI CCTNAGG 1 cut(s) 921
BanI GGYRCC 2 cut(s) 1066, 1242
BbsI GAAGAC 2 cut(s) 223, 501
Bbv12I GWGCWC 1 cut(s) 904
BbvI GCAGC 6 cut(s) 117, 120, 632, 793, 861, 1040
BccI CCATC 6 cut(s) 50, 191, 364, 695, 997, 1159
BciT130I CCWGG 1 cut(s) 1064
BciVI GTATCC 1 cut(s) 476
BclI TGATCA 1 cut(s) 181
BcoDI GTCTC 2 cut(s) 206, 756
BfaI CTAG 5 cut(s) 443, 632, 780, 1170, 1239
BfmI CTRYAG 1 cut(s) 57
BfoI RGCGCY 1 cut(s) 1070
BfuI GTATCC 1 cut(s) 476
BisI GCNGC 6 cut(s) 106, 109, 621, 807, 875, 1029
BlsI GCNGC 6 cut(s) 107, 110, 622, 808, 876, 1030
Bme1390I CCNGG 1 cut(s) 1064
Bme18I GGWCC 1 cut(s) 749
BmeT110I CYCGRG 1 cut(s) 624
BmgBI CACGTC 1 cut(s) 853
BmgT120I GGNCC 2 cut(s) 749, 1009
BmiI GGNNCC 3 cut(s) 750, 1068, 1244
BmrFI CCNGG 1 cut(s) 1064
BmrI ACTGGG 1 cut(s) 955
BmsI GCATC 1 cut(s) 985
BmuI ACTGGG 1 cut(s) 955
BpiI GAAGAC 2 cut(s) 223, 501
BpmI CTGGAG 1 cut(s) 795
BsaBI GATNNNNATC 1 cut(s) 180
BsaHI GRCGYC 1 cut(s) 1067
Bsc4I CCNNNNNNNGG 1 cut(s) 758
Bse118I RCCGGY 1 cut(s) 1083
Bse1I ACTGG 4 cut(s) 367, 760, 950, 1119
Bse21I CCTNAGG 1 cut(s) 921
Bse3DI GCAATG 1 cut(s) 819
Bse8I GATNNNNATC 1 cut(s) 180
BseBI CCWGG 1 cut(s) 1064
BseGI GGATG 5 cut(s) 202, 334, 457, 1000, 1008
BseJI GATNNNNATC 1 cut(s) 180
BseLI CCNNNNNNNGG 1 cut(s) 758
BseMI GCAATG 1 cut(s) 819
BseMII CTCAG 1 cut(s) 738
BseNI ACTGG 4 cut(s) 367, 760, 950, 1119
BseXI GCAGC 6 cut(s) 117, 120, 632, 793, 861, 1040
BshFI GGCC 4 cut(s) 630, 683, 1011, 1087
BshNI GGYRCC 2 cut(s) 1066, 1242
BsiHKAI GWGCWC 1 cut(s) 904
BsiHKCI CYCGRG 1 cut(s) 624
BsiSI CCGG 1 cut(s) 1084
BslFI GGGAC 4 cut(s) 76, 605, 762, 805
BslI CCNNNNNNNGG 1 cut(s) 758
BsmAI GTCTC 2 cut(s) 206, 756
BsmFI GGGAC 4 cut(s) 76, 605, 762, 805
BsmI GAATGC 1 cut(s) 635
BsnI GGCC 4 cut(s) 630, 683, 1011, 1087
BsoBI CYCGRG 1 cut(s) 624
Bsp1286I GDGCHC 1 cut(s) 904
Bsp143I GATC 5 cut(s) 17, 181, 277, 1072, 1193
BspACI CCGC 1 cut(s) 1229
BspANI GGCC 4 cut(s) 630, 683, 1011, 1087
BspCNI CTCAG 1 cut(s) 737
BspLI GGNNCC 3 cut(s) 750, 1068, 1244
BspPI GGATC 3 cut(s) 25, 1067, 1188
BspQI GCTCTTC 1 cut(s) 839
BspT107I GGYRCC 2 cut(s) 1066, 1242
BsrDI GCAATG 1 cut(s) 819
BsrFI RCCGGY 1 cut(s) 1083
BsrI ACTGG 4 cut(s) 367, 760, 950, 1119
BssAI RCCGGY 1 cut(s) 1083
BssMI GATC 5 cut(s) 17, 181, 277, 1072, 1193
BssNI GRCGYC 1 cut(s) 1067
Bst2UI CCWGG 1 cut(s) 1064
Bst4CI ACNGT 2 cut(s) 488, 647
Bst6I CTCTTC 2 cut(s) 345, 839
BstACI GRCGYC 1 cut(s) 1067
BstC8I GCNNGC 2 cut(s) 358, 1085
BstDEI CTNAG 3 cut(s) 161, 724, 921
BstF5I GGATG 5 cut(s) 202, 334, 457, 1000, 1008
BstH2I RGCGCY 1 cut(s) 1070
BstHHI GCGC 1 cut(s) 1069
BstKTI GATC 5 cut(s) 20, 184, 280, 1075, 1196
BstMAI GTCTC 2 cut(s) 206, 756
BstMBI GATC 5 cut(s) 17, 181, 277, 1072, 1193
BstMWI GCNNNNNNNGC 1 cut(s) 617
BstNI CCWGG 1 cut(s) 1064
BstNSI RCATGY 1 cut(s) 773
BstSCI CCNGG 1 cut(s) 1062
BstSFI CTRYAG 1 cut(s) 57
BstV1I GCAGC 6 cut(s) 117, 120, 632, 793, 861, 1040
BstV2I GAAGAC 2 cut(s) 223, 501
BstX2I RGATCY 2 cut(s) 17, 1072
BstXI CCANNNNNNTGG 1 cut(s) 588
BstYI RGATCY 2 cut(s) 17, 1072
Bsu36I CCTNAGG 1 cut(s) 921
BsuI GTATCC 1 cut(s) 476
BsuRI GGCC 4 cut(s) 630, 683, 1011, 1087
BtrI CACGTC 1 cut(s) 853
BtsCI GGATG 5 cut(s) 202, 334, 457, 1000, 1008
BtsIMutI CAGTG 1 cut(s) 360
Cac8I GCNNGC 2 cut(s) 358, 1085
CfoI GCGC 1 cut(s) 1069
Cfr10I RCCGGY 1 cut(s) 1083
Cfr13I GGNCC 2 cut(s) 749, 1009
Csp6I GTAC 2 cut(s) 1202, 1243
CviAII CATG 5 cut(s) 348, 526, 770, 1093, 1257
CviQI GTAC 2 cut(s) 1202, 1243
DdeI CTNAG 3 cut(s) 161, 724, 921
DinI GGCGCC 1 cut(s) 1068
DpnI GATC 5 cut(s) 19, 183, 279, 1074, 1195
DpnII GATC 5 cut(s) 17, 181, 277, 1072, 1193
Eam1104I CTCTTC 2 cut(s) 345, 839
EarI CTCTTC 2 cut(s) 345, 839
Eco147I AGGCCT 2 cut(s) 630, 683
Eco47I GGWCC 1 cut(s) 749
Eco57I CTGAAG 1 cut(s) 217
Eco81I CCTNAGG 1 cut(s) 921
Eco88I CYCGRG 1 cut(s) 624
EcoRII CCWGG 1 cut(s) 1062
EgeI GGCGCC 1 cut(s) 1068
EheI GGCGCC 1 cut(s) 1068
FaeI CATG 5 cut(s) 351, 529, 773, 1096, 1260
FalI AAGNNNNNCTT 2 cut(s) 1072, 1104
FaqI GGGAC 4 cut(s) 76, 605, 762, 805
FatI CATG 5 cut(s) 347, 525, 769, 1092, 1256
FauI CCCGC 1 cut(s) 1236
FauNDI CATATG 1 cut(s) 796
FbaI TGATCA 1 cut(s) 181
Fnu4HI GCNGC 6 cut(s) 106, 109, 621, 807, 875, 1029
FokI GGATG 5 cut(s) 209, 341, 444, 1007, 1015
Fsp4HI GCNGC 6 cut(s) 106, 109, 621, 807, 875, 1029
FspBI CTAG 5 cut(s) 443, 632, 780, 1170, 1239
GlaI GCGC 1 cut(s) 1068
GluI GCNGC 6 cut(s) 106, 109, 621, 807, 875, 1029
GsuI CTGGAG 1 cut(s) 795
HaeII RGCGCY 1 cut(s) 1070
HaeIII GGCC 4 cut(s) 630, 683, 1011, 1087
HapII CCGG 1 cut(s) 1084
HhaI GCGC 1 cut(s) 1069
Hin1I GRCGYC 1 cut(s) 1067
Hin1II CATG 5 cut(s) 351, 529, 773, 1096, 1260
Hin6I GCGC 1 cut(s) 1067
HinP1I GCGC 1 cut(s) 1067
HincII GTYRAC 3 cut(s) 54, 192, 777
HindII GTYRAC 3 cut(s) 54, 192, 777
HinfI GANTC 6 cut(s) 188, 228, 547, 565, 600, 764
HpaII CCGG 1 cut(s) 1084
HphI GGTGA 2 cut(s) 302, 542
Hpy166II GTNNAC 5 cut(s) 54, 192, 436, 777, 943
Hpy188I TCNGA 9 cut(s) 142, 277, 430, 560, 605, 652, 727, 888, 1136
Hpy188III TCNNGA 4 cut(s) 185, 382, 812, 1208
Hpy8I GTNNAC 5 cut(s) 54, 192, 436, 777, 943
Hpy99I CGWCG 2 cut(s) 854, 1224
HpyAV CCTTC 4 cut(s) 441, 555, 1030, 1098
HpyCH4III ACNGT 2 cut(s) 488, 647
HpyCH4IV ACGT 2 cut(s) 50, 852
HpyCH4V TGCA 7 cut(s) 242, 406, 529, 643, 716, 824, 998
HpyF10VI GCNNNNNNNGC 1 cut(s) 617
HpyF3I CTNAG 3 cut(s) 161, 724, 921
HpySE526I ACGT 2 cut(s) 50, 852
Hsp92I GRCGYC 1 cut(s) 1067
Hsp92II CATG 5 cut(s) 351, 529, 773, 1096, 1260
HspAI GCGC 1 cut(s) 1067
KasI GGCGCC 1 cut(s) 1066
KpnI GGTACC 1 cut(s) 1246
KroI GCCGGC 1 cut(s) 1083
KroNI GCCGGC 1 cut(s) 1085
Ksp22I TGATCA 1 cut(s) 181
Kzo9I GATC 5 cut(s) 17, 181, 277, 1072, 1193
LguI GCTCTTC 1 cut(s) 839
LmnI GCTCC 3 cut(s) 617, 814, 925
Lsp1109I GCAGC 6 cut(s) 117, 120, 632, 793, 861, 1040
LweI GCATC 1 cut(s) 985
MaeI CTAG 5 cut(s) 443, 632, 780, 1170, 1239
MaeII ACGT 2 cut(s) 50, 852
MaeIII GTNAC 1 cut(s) 894
MalI GATC 5 cut(s) 19, 183, 279, 1074, 1195
MboI GATC 5 cut(s) 17, 181, 277, 1072, 1193
MboII GAAGA 7 cut(s) 223, 332, 506, 856, 953, 984, 1121
MfeI CAATTG 1 cut(s) 66
MflI RGATCY 2 cut(s) 17, 1072
MhlI GDGCHC 1 cut(s) 904
Mly113I GGCGCC 1 cut(s) 1067
MlyI GAGTC 3 cut(s) 197, 237, 758
MnlI CCTC 7 cut(s) 286, 290, 620, 694, 975, 1000, 1177
MroNI GCCGGC 1 cut(s) 1083
MroXI GAANNNNTTC 2 cut(s) 451, 1122
MseI TTAA 3 cut(s) 389, 933, 980
MslI CAYNNNNRTG 2 cut(s) 365, 837
MspI CCGG 1 cut(s) 1084
MspR9I CCNGG 1 cut(s) 1064
MunI CAATTG 1 cut(s) 66
Mva1269I GAATGC 1 cut(s) 635
MvaI CCWGG 1 cut(s) 1064
MwoI GCNNNNNNNGC 1 cut(s) 617
NaeI GCCGGC 1 cut(s) 1085
NarI GGCGCC 1 cut(s) 1067
NdeI CATATG 1 cut(s) 796
NdeII GATC 5 cut(s) 17, 181, 277, 1072, 1193
NgoMIV GCCGGC 1 cut(s) 1083
NlaIII CATG 5 cut(s) 351, 529, 773, 1096, 1260
NlaIV GGNNCC 3 cut(s) 750, 1068, 1244
NspI RCATGY 1 cut(s) 773
PaeR7I CTCGAG 1 cut(s) 624
PceI AGGCCT 2 cut(s) 630, 683
PciI ACATGT 1 cut(s) 769
PciSI GCTCTTC 1 cut(s) 839
PctI GAATGC 1 cut(s) 635
PdiI GCCGGC 1 cut(s) 1085
PdmI GAANNNNTTC 2 cut(s) 451, 1122
PfeI GAWTC 3 cut(s) 547, 565, 600
PflMI CCANNNNNTGG 1 cut(s) 758
PkrI GCNGC 6 cut(s) 107, 110, 622, 808, 876, 1030
PleI GAGTC 3 cut(s) 196, 236, 758
PluTI GGCGCC 1 cut(s) 1070
PpsI GAGTC 3 cut(s) 196, 236, 758
PscI ACATGT 1 cut(s) 769
PsiI TTATAA 1 cut(s) 711
Psp6I CCWGG 1 cut(s) 1062
PspGI CCWGG 1 cut(s) 1062
PspN4I GGNNCC 3 cut(s) 750, 1068, 1244
PspPI GGNCC 2 cut(s) 749, 1009
PspXI VCTCGAGB 1 cut(s) 624
PsuI RGATCY 2 cut(s) 17, 1072
RsaI GTAC 2 cut(s) 1203, 1244
RsaNI GTAC 2 cut(s) 1202, 1243
RseI CAYNNNNRTG 2 cut(s) 365, 837
SapI GCTCTTC 1 cut(s) 839
SaqAI TTAA 3 cut(s) 389, 933, 980
SatI GCNGC 6 cut(s) 106, 109, 621, 807, 875, 1029
Sau3AI GATC 5 cut(s) 17, 181, 277, 1072, 1193
Sau96I GGNCC 2 cut(s) 749, 1009
SchI GAGTC 3 cut(s) 197, 237, 758
ScrFI CCNGG 1 cut(s) 1064
SduI GDGCHC 1 cut(s) 904
SfaNI GCATC 1 cut(s) 985
SfcI CTRYAG 1 cut(s) 57
SfoI GGCGCC 1 cut(s) 1068
Sfr274I CTCGAG 1 cut(s) 624
SinI GGWCC 1 cut(s) 749
SlaI CTCGAG 1 cut(s) 624
SmiMI CAYNNNNRTG 2 cut(s) 365, 837
SmlI CTYRAG 1 cut(s) 624
SmoI CTYRAG 1 cut(s) 624
SseBI AGGCCT 2 cut(s) 630, 683
SsiI CCGC 1 cut(s) 1229
SspDI GGCGCC 1 cut(s) 1066
SspI AATATT 2 cut(s) 1016, 1048
SspMI CTAG 5 cut(s) 443, 632, 780, 1170, 1239
StuI AGGCCT 2 cut(s) 630, 683
StyD4I CCNGG 1 cut(s) 1062
TaaI ACNGT 2 cut(s) 488, 647
TaiI ACGT 2 cut(s) 53, 855
TaqI TCGA 4 cut(s) 625, 906, 970, 1192
TatI WGTACW 1 cut(s) 1201
TfiI GAWTC 3 cut(s) 547, 565, 600
Tru1I TTAA 3 cut(s) 389, 933, 980
Tru9I TTAA 3 cut(s) 389, 933, 980
TscAI CASTG 1 cut(s) 367
TseI GCWGC 6 cut(s) 105, 108, 620, 806, 874, 1028
TspDTI ATGAA 3 cut(s) 263, 514, 1109
TspGWI ACGGA 2 cut(s) 209, 515
TspRI CASTG 1 cut(s) 367
Van91I CCANNNNNTGG 1 cut(s) 758
VpaK11BI GGWCC 1 cut(s) 749
XapI RAATTY 4 cut(s) 72, 204, 282, 882
XceI RCATGY 1 cut(s) 773
XhoI CTCGAG 1 cut(s) 624
XmnI GAANNNNTTC 2 cut(s) 451, 1122
XspI CTAG 5 cut(s) 443, 632, 780, 1170, 1239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.