Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003491

Physical Location & Seq

Genomic Coordinates Forward (+)

12926751 .. 12945489

Gene Structure 18739 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G012430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGAATGTCAAGGAAGAGCGAAAACTTCGAAGCCTAGCCCAGTCACATACTGAGGGCCAAGTTTTGGAGACATCCAACTCAAGAGTTTTCAGTTTCAAAGAGTTGACTACTGCTTGTAGGAATTTTCGGCCAGACGGATTACTTGGTGAGGGAGGCTTTGGAAAGGTTTTCAAGGGTTGGGTGGATGAGGAAACACTTTTACCTTCAAGTGTTAACACCGGAATTATCATTGCTATCAAGAAACGTAACCCAGAATGCTTCCAAGGCCTTCAACAGTGGCAGGCAGAGGTGGACTTTCTAGGAACGGTTTCTCATCCCAACATTGTTAAACTATTGGGAAACTGCTCAGCGGACAACGAGCTACTCCTTGTCTATGAATTCATGCAGAAAGGAAGCTTGGGGGTCCATCTTTTTAAAAGAACCCGAGACATTGAAGCAGTACTGTCTTGGGACAACAGACTCAAAATAGCTATCGGAGTAGCTCGAGCCTTGACTTTCTTACACAGTTTACCAAAACAAATCATACACAGAAATGTCAAATCCTCTAATATATTGCTTGATGAGAATTACAATGCAAAACTCTCCGGTTTTGGCTTGGCAATATTGGGGCCAACTGATGGAGAATCATATATAGAGACTAAAATTATTGGCACATATGGTTATGCTGCTCCAGAATATGTTTCAACAGGTAATTTGTACGTGAAGAGCGATGTGTACAGCTTCGGTGTTGTGCTGCTCGAAATTCTGACAGAATTTAGTCGATTGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

256

Amino Acids

28.48

Weight (kDa)

6.97

Isoelectric Point (pI)

34.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	46 - 251	2.1e-35	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	47 - 250	4e-41	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35600 AT4G35600
fragaria_vesca	FvH4_1g10470 FvH4_1g10470 FvH4_1g10470 FvH4_1g14300 FvH4_1g14300 FvH4_1g15410 FvH4_1g15410 FvH4_1g15410 FvH4_1g15410
malus_domestica	MD02G1117900.v1.1 MD15G1232600.v1.1
prunus_persica	Prupe.7G181500_v2.0.a1
pyrus_communis	pycom02g09150 pycom15g20700
rosa_chinensis	RchiOBHm_Chr2g0097331 RchiOBHm_Chr2g0102961
rosa_laevigata	RLG00000009020 RLG00000016718 RLG00000017194 RLG00000017335
rosa_multiflora	Rmu_sc0000388.1_g000037 Rmu_sc0001060.1_g000013 Rmu_sc0035636.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144760 Rroxscaffold_5G00347840
rosa_rugosa	Rorug02G0065900 Rorug02G0065900 Rorug02G0110700
rosa_samantha	Rh2CG117400 Rh2CG165600 Rh2DG116600
rosa_wichuraiana	Rw2G008810 Rw2G012430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	64, 617
AciI	CCGC	1 cut(s)	350
AcoI	YGGCCR	1 cut(s)	128
AcsI	RAATTY	4 cut(s)	121, 377, 741, 752
AfaI	GTAC	3 cut(s)	441, 698, 716
AfiI	CCNNNNNNNGG	2 cut(s)	64, 617
AgsI	TTSAA	6 cut(s)	97, 172, 207, 272, 434, 684
AjuI	GAANNNNNNNTTGG	2 cut(s)	380, 412
AluBI	AGCT	5 cut(s)	361, 396, 470, 482, 720
AluI	AGCT	5 cut(s)	361, 396, 470, 482, 720
Alw26I	GTCTC	3 cut(s)	62, 420, 629
Ama87I	CYCGRG	2 cut(s)	423, 483
AoxI	GGCC	4 cut(s)	55, 128, 265, 608
ApeKI	GCWGC	2 cut(s)	665, 733
ApoI	RAATTY	4 cut(s)	121, 377, 741, 752
Asp700I	GAANNNNTTC	1 cut(s)	307
AspS9I	GGNCC	3 cut(s)	55, 403, 608
AsuHPI	GGTGA	1 cut(s)	158
AsuII	TTCGAA	1 cut(s)	28
AvaI	CYCGRG	2 cut(s)	423, 483
AvaII	GGWCC	1 cut(s)	403
BbvI	GCAGC	2 cut(s)	652, 720
BccI	CCATC	2 cut(s)	414, 611
BcoDI	GTCTC	3 cut(s)	62, 420, 629
BfaI	CTAG	2 cut(s)	35, 299
BisI	GCNGC	2 cut(s)	666, 734
BlpI	GCTNAGC	1 cut(s)	346
BlsI	GCNGC	2 cut(s)	667, 735
BmcAI	AGTACT	1 cut(s)	441
Bme18I	GGWCC	1 cut(s)	403
BmeT110I	CYCGRG	2 cut(s)	423, 483
BmgT120I	GGNCC	3 cut(s)	55, 403, 608
BmiI	GGNNCC	2 cut(s)	404, 609
BmrI	ACTGGG	1 cut(s)	34
BmuI	ACTGGG	1 cut(s)	34
BpmI	CTGGAG	1 cut(s)	654
Bpu1102I	GCTNAGC	1 cut(s)	346
Bpu14I	TTCGAA	1 cut(s)	28
BpuEI	CTTGAG	1 cut(s)	64
BsaAI	YACGTR	1 cut(s)	700
BsaJI	CCNNGG	1 cut(s)	262
BsaWI	WCCGGW	2 cut(s)	218, 584
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 617
Bse1I	ACTGG	1 cut(s)	40
Bse3DI	GCAATG	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	262
BseGI	GGATG	3 cut(s)	71, 190, 313
BseLI	CCNNNNNNNGG	2 cut(s)	64, 617
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	2 cut(s)	42, 360
BseNI	ACTGG	1 cut(s)	40
BseXI	GCAGC	2 cut(s)	652, 720
BshFI	GGCC	4 cut(s)	57, 130, 267, 610
BsiHKCI	CYCGRG	2 cut(s)	423, 483
BsiSI	CCGG	2 cut(s)	219, 585
BslFI	GGGAC	1 cut(s)	464
BslI	CCNNNNNNNGG	2 cut(s)	64, 617
BsmAI	GTCTC	3 cut(s)	62, 420, 629
BsmFI	GGGAC	1 cut(s)	464
BsmI	GAATGC	1 cut(s)	260
BsnI	GGCC	4 cut(s)	57, 130, 267, 610
BsoBI	CYCGRG	2 cut(s)	423, 483
Bsp119I	TTCGAA	1 cut(s)	28
Bsp1407I	TGTACA	1 cut(s)	714
Bsp1720I	GCTNAGC	1 cut(s)	346
BspACI	CCGC	1 cut(s)	350
BspANI	GGCC	4 cut(s)	57, 130, 267, 610
BspCNI	CTCAG	2 cut(s)	43, 359
BspLI	GGNNCC	2 cut(s)	404, 609
BspQI	GCTCTTC	2 cut(s)	9, 698
BspT104I	TTCGAA	1 cut(s)	28
BsrDI	GCAATG	1 cut(s)	228
BsrGI	TGTACA	1 cut(s)	714
BsrI	ACTGG	1 cut(s)	40
BssECI	CCNNGG	1 cut(s)	262
BssT1I	CCWWGG	1 cut(s)	262
Bst4CI	ACNGT	4 cut(s)	276, 307, 444, 506
Bst6I	CTCTTC	2 cut(s)	9, 698
BstAUI	TGTACA	1 cut(s)	714
BstBAI	YACGTR	1 cut(s)	700
BstBI	TTCGAA	1 cut(s)	28
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	2 cut(s)	51, 346
BstF5I	GGATG	3 cut(s)	71, 190, 313
BstMAI	GTCTC	3 cut(s)	62, 420, 629
BstMWI	GCNNNNNNNGC	1 cut(s)	264
BstV1I	GCAGC	2 cut(s)	652, 720
BsuRI	GGCC	4 cut(s)	57, 130, 267, 610
BtgZI	GCGATG	1 cut(s)	723
BtsCI	GGATG	3 cut(s)	71, 190, 313
BtsIMutI	CAGTG	1 cut(s)	281
Cac8I	GCNNGC	1 cut(s)	282
Cfr13I	GGNCC	3 cut(s)	55, 403, 608
Csp6I	GTAC	3 cut(s)	440, 697, 715
CviAII	CATG	1 cut(s)	382
CviQI	GTAC	3 cut(s)	440, 697, 715
DdeI	CTNAG	2 cut(s)	51, 346
DraI	TTTAAA	1 cut(s)	415
EaeI	YGGCCR	1 cut(s)	128
Eam1104I	CTCTTC	2 cut(s)	9, 698
EarI	CTCTTC	2 cut(s)	9, 698
Eco130I	CCWWGG	1 cut(s)	262
Eco147I	AGGCCT	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	403
Eco88I	CYCGRG	2 cut(s)	423, 483
EcoRI	GAATTC	1 cut(s)	377
EcoT14I	CCWWGG	1 cut(s)	262
ErhI	CCWWGG	1 cut(s)	262
FaeI	CATG	1 cut(s)	385
FaqI	GGGAC	1 cut(s)	464
FatI	CATG	1 cut(s)	381
FauNDI	CATATG	1 cut(s)	655
Fnu4HI	GCNGC	2 cut(s)	666, 734
FokI	GGATG	3 cut(s)	58, 197, 300
Fsp4HI	GCNGC	2 cut(s)	666, 734
FspBI	CTAG	2 cut(s)	35, 299
GluI	GCNGC	2 cut(s)	666, 734
GsuI	CTGGAG	1 cut(s)	654
HaeIII	GGCC	4 cut(s)	57, 130, 267, 610
HapII	CCGG	2 cut(s)	219, 585
Hin1II	CATG	1 cut(s)	385
HincII	GTYRAC	2 cut(s)	105, 214
HindII	GTYRAC	2 cut(s)	105, 214
HindIII	AAGCTT	1 cut(s)	394
HinfI	GANTC	2 cut(s)	459, 623
HpaI	GTTAAC	1 cut(s)	214
HpaII	CCGG	2 cut(s)	219, 585
HphI	GGTGA	1 cut(s)	158
Hpy166II	GTNNAC	5 cut(s)	105, 214, 292, 509, 715
Hpy188I	TCNGA	2 cut(s)	476, 747
Hpy188III	TCNNGA	3 cut(s)	81, 238, 671
Hpy8I	GTNNAC	5 cut(s)	105, 214, 292, 509, 715
HpyAV	CCTTC	2 cut(s)	213, 278
HpyCH4III	ACNGT	4 cut(s)	276, 307, 444, 506
HpyCH4IV	ACGT	2 cut(s)	244, 699
HpyCH4V	TGCA	2 cut(s)	385, 575
HpyF10VI	GCNNNNNNNGC	1 cut(s)	264
HpyF3I	CTNAG	2 cut(s)	51, 346
HpySE526I	ACGT	2 cut(s)	244, 699
Hsp92II	CATG	1 cut(s)	385
KspAI	GTTAAC	1 cut(s)	214
LguI	GCTCTTC	2 cut(s)	9, 698
LmnI	GCTCC	1 cut(s)	673
LpnPI	CCDG	8 cut(s)	53, 144, 232, 264, 266, 598, 672, 684
Lsp1109I	GCAGC	2 cut(s)	652, 720
MaeI	CTAG	2 cut(s)	35, 299
MaeII	ACGT	2 cut(s)	244, 699
MaeIII	GTNAC	2 cut(s)	42, 245
MboII	GAAGA	2 cut(s)	26, 715
MluCI	AATT	8 cut(s)	121, 222, 377, 565, 642, 691, 741, 752
MlyI	GAGTC	1 cut(s)	453
MmeI	TCCRAC	1 cut(s)	99
MnlI	CCTC	6 cut(s)	46, 142, 146, 181, 280, 553
MroXI	GAANNNNTTC	1 cut(s)	307
MseI	TTAA	3 cut(s)	213, 327, 414
MslI	CAYNNNNRTG	1 cut(s)	531
MspA1I	CMGCKG	1 cut(s)	350
MspI	CCGG	2 cut(s)	219, 585
Mva1269I	GAATGC	1 cut(s)	260
MwoI	GCNNNNNNNGC	1 cut(s)	264
NdeI	CATATG	1 cut(s)	655
NlaIII	CATG	1 cut(s)	385
NlaIV	GGNNCC	2 cut(s)	404, 609
NmuCI	GTSAC	1 cut(s)	42
NspV	TTCGAA	1 cut(s)	28
PaeR7I	CTCGAG	1 cut(s)	483
PceI	AGGCCT	1 cut(s)	267
PciSI	GCTCTTC	2 cut(s)	9, 698
PcsI	WCGNNNNNNNCGW	1 cut(s)	705
PctI	GAATGC	1 cut(s)	260
PdmI	GAANNNNTTC	1 cut(s)	307
PfeI	GAWTC	1 cut(s)	623
PflMI	CCANNNNNTGG	2 cut(s)	64, 617
PkrI	GCNGC	2 cut(s)	667, 735
PleI	GAGTC	1 cut(s)	453
PpsI	GAGTC	1 cut(s)	453
Ppu21I	YACGTR	1 cut(s)	700
PspN4I	GGNNCC	2 cut(s)	404, 609
PspPI	GGNCC	3 cut(s)	55, 403, 608
PspXI	VCTCGAGB	1 cut(s)	483
RsaI	GTAC	3 cut(s)	441, 698, 716
RsaNI	GTAC	3 cut(s)	440, 697, 715
RseI	CAYNNNNRTG	1 cut(s)	531
SapI	GCTCTTC	2 cut(s)	9, 698
SaqAI	TTAA	3 cut(s)	213, 327, 414
SatI	GCNGC	2 cut(s)	666, 734
Sau96I	GGNCC	3 cut(s)	55, 403, 608
ScaI	AGTACT	1 cut(s)	441
SchI	GAGTC	1 cut(s)	453
Sfr274I	CTCGAG	1 cut(s)	483
SfuI	TTCGAA	1 cut(s)	28
SinI	GGWCC	1 cut(s)	403
SlaI	CTCGAG	1 cut(s)	483
SmiMI	CAYNNNNRTG	1 cut(s)	531
SmlI	CTYRAG	2 cut(s)	79, 483
SmoI	CTYRAG	2 cut(s)	79, 483
Sse9I	AATT	8 cut(s)	121, 222, 377, 565, 642, 691, 741, 752
SseBI	AGGCCT	1 cut(s)	267
SsiI	CCGC	1 cut(s)	350
SspI	AATATT	1 cut(s)	603
SspMI	CTAG	2 cut(s)	35, 299
StuI	AGGCCT	1 cut(s)	267
StyI	CCWWGG	1 cut(s)	262
TaaI	ACNGT	4 cut(s)	276, 307, 444, 506
TaiI	ACGT	2 cut(s)	247, 702
TaqI	TCGA	4 cut(s)	28, 484, 738, 760
TasI	AATT	8 cut(s)	121, 222, 377, 565, 642, 691, 741, 752
TatI	WGTACW	2 cut(s)	439, 714
TfiI	GAWTC	1 cut(s)	623
Tru1I	TTAA	3 cut(s)	213, 327, 414
Tru9I	TTAA	3 cut(s)	213, 327, 414
TscAI	CASTG	1 cut(s)	281
TseFI	GTSAC	1 cut(s)	42
TseI	GCWGC	2 cut(s)	665, 733
Tsp45I	GTSAC	1 cut(s)	42
TspDTI	ATGAA	3 cut(s)	17, 370, 390
TspGWI	ACGGA	1 cut(s)	150
TspRI	CASTG	1 cut(s)	281
Van91I	CCANNNNNTGG	2 cut(s)	64, 617
VpaK11BI	GGWCC	1 cut(s)	403
XapI	RAATTY	4 cut(s)	121, 377, 741, 752
XhoI	CTCGAG	1 cut(s)	483
XmnI	GAANNNNTTC	1 cut(s)	307
XspI	CTAG	2 cut(s)	35, 299
ZrmI	AGTACT	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.