Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003491

Physical Location & Seq

Genomic Coordinates Forward (+)

45162277 .. 45164130

Gene Structure 1854 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009020

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGAGGCATCCAACTCAAGAGTTTTCAGTTATGCAGAGTTGAAGGATGCTACTGGGAATTTCAGGTCAGGCATGTATGGGAGGATGTTCAAGGGTTGGGTGGATGAGCAAACGCTTGCACCTTCTACGGTTGACACTGGAATGGTCGTTGCTGTCAAGAGATTTGACCCAGGAAGTATCGAAGACGTTGAACAATGGCAGAGCGAGGTGCTCGTAGGACAGCTTTCTCATCCCAACCTTGTCAAGCTATTGGGATACTGTATTGAGAAAAAGAAGAAATTCTTAGTTTATGAGTTCGTGGCAAATGGAAGCTTACCTAATCATCTTTTTAGAAAATTCGTTTGGAAGGAACCACTATCTTGGGACAACAGACTCAAAATAGCTATTGGAGCTGCTAAGGCTTTAGCTTTCTTGCACAGTTCAGAAATCGTACACAGAGATGTCAAACCCACAAATATATTACTTGTTGGGAATAACAGTGCAAAACTTTCAAATTTTCACTTTGCAATATCGAGGCCAGCTGATGAAGAGTTGTATATGACTTCGGTTCGCGGCACAATGGGCTATATTGACCCAGAATACATGATAACAGGTCATTTGTCTGTGAAGAGCGATGTGTATAGCTTTGGTGTTGTGCTGCTTCAAATTCTGACAGGGTTAATGGCATGTGATTATACCCGCCCTCAGGAACAAATTAGTCTGGTTGACTGGGCTATACCACTTCTCTCTCATCAAACAAAGTTGCAAACCATTATGGATGCACATATGGAGGGCCTGTATTCTTCACAGGAAGCATCACAGACAGCACAGCTTGCTCTAAAATGTCTAGAAAGAGATCCCCAAAACCGACCTTCCATGATAAAAGTTGTGGAGAAATTGGAGGAATTGGAACGGATTCGGGCAAACCGAATCACTATTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

308

Amino Acids

34.72

Weight (kDa)

6.72

Isoelectric Point (pI)

33.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	23 - 293	2.7e-38	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	45 - 291	3.3e-37	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35600 AT4G35600
fragaria_vesca	FvH4_1g10470 FvH4_1g10470 FvH4_1g10470 FvH4_1g14300 FvH4_1g14300 FvH4_1g15410 FvH4_1g15410 FvH4_1g15410 FvH4_1g15410
malus_domestica	MD02G1117900.v1.1 MD15G1232600.v1.1
prunus_persica	Prupe.7G181500_v2.0.a1
pyrus_communis	pycom02g09150 pycom15g20700
rosa_chinensis	RchiOBHm_Chr2g0097331 RchiOBHm_Chr2g0102961
rosa_laevigata	RLG00000009020 RLG00000016718 RLG00000017194 RLG00000017335
rosa_multiflora	Rmu_sc0000388.1_g000037 Rmu_sc0001060.1_g000013 Rmu_sc0035636.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144760 Rroxscaffold_5G00347840
rosa_rugosa	Rorug02G0065900 Rorug02G0065900 Rorug02G0110700
rosa_samantha	Rh2CG117400 Rh2CG165600 Rh2DG116600
rosa_wichuraiana	Rw2G008810 Rw2G012430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	552
AciI	CCGC	2 cut(s)	552, 679
AclWI	GGATC	1 cut(s)	830
AcsI	RAATTY	5 cut(s)	58, 278, 335, 493, 645
AfaI	GTAC	1 cut(s)	432
AfiI	CCNNNNNNNGG	1 cut(s)	685
AgsI	TTSAA	5 cut(s)	43, 91, 191, 492, 644
AjnI	CCWGG	1 cut(s)	169
AjuI	GAANNNNNNNTTGG	2 cut(s)	325, 357
AluBI	AGCT	9 cut(s)	223, 247, 312, 383, 392, 407, 521, 624, 811
AluI	AGCT	9 cut(s)	223, 247, 312, 383, 392, 407, 521, 624, 811
Alw21I	GWGCWC	1 cut(s)	213
AlwI	GGATC	1 cut(s)	830
AoxI	GGCC	2 cut(s)	515, 772
ApeKI	GCWGC	2 cut(s)	392, 637
ApoI	RAATTY	5 cut(s)	58, 278, 335, 493, 645
Asp700I	GAANNNNTTC	2 cut(s)	278, 894
AspS9I	GGNCC	1 cut(s)	772
AxyI	CCTNAGG	1 cut(s)	684
BbsI	GAAGAC	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	2 cut(s)	379, 624
BciT130I	CCWGG	1 cut(s)	171
BciVI	GTATCC	1 cut(s)	248
BfaI	CTAG	1 cut(s)	827
BfuI	GTATCC	1 cut(s)	248
BisI	GCNGC	3 cut(s)	393, 553, 638
BlsI	GCNGC	3 cut(s)	394, 554, 639
Bme1390I	CCNGG	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	772
BmiI	GGNNCC	1 cut(s)	351
BmrFI	CCNGG	1 cut(s)	171
BmrI	ACTGGG	2 cut(s)	63, 718
BmsI	GCATC	4 cut(s)	17, 37, 748, 803
BmuI	ACTGGG	2 cut(s)	63, 718
BpiI	GAAGAC	1 cut(s)	189
Bpu10I	CCTNAGC	1 cut(s)	396
BsaJI	CCNNGG	1 cut(s)	169
BsaXI	ACNNNNNCTCC	2 cut(s)	761, 791
Bsc4I	CCNNNNNNNGG	1 cut(s)	685
Bse1I	ACTGG	3 cut(s)	58, 142, 713
Bse21I	CCTNAGG	1 cut(s)	684
BseBI	CCWGG	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	169
BseGI	GGATG	6 cut(s)	8, 52, 90, 109, 229, 763
BseLI	CCNNNNNNNGG	1 cut(s)	685
BseMII	CTCAG	1 cut(s)	698
BseNI	ACTGG	3 cut(s)	58, 142, 713
BseXI	GCAGC	2 cut(s)	379, 624
Bsh1236I	CGCG	1 cut(s)	552
BshFI	GGCC	2 cut(s)	517, 774
BsiHKAI	GWGCWC	1 cut(s)	213
BslFI	GGGAC	1 cut(s)	377
BslI	CCNNNNNNNGG	1 cut(s)	685
BsmFI	GGGAC	1 cut(s)	377
BsnI	GGCC	2 cut(s)	517, 774
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	1 cut(s)	835
BspACI	CCGC	2 cut(s)	552, 679
BspANI	GGCC	2 cut(s)	517, 774
BspCNI	CTCAG	1 cut(s)	697
BspFNI	CGCG	1 cut(s)	552
BspLI	GGNNCC	1 cut(s)	351
BspPI	GGATC	1 cut(s)	830
BspQI	GCTCTTC	1 cut(s)	602
BsrI	ACTGG	3 cut(s)	58, 142, 713
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	1 cut(s)	835
Bst2UI	CCWGG	1 cut(s)	171
Bst4CI	ACNGT	4 cut(s)	130, 260, 419, 479
Bst6I	CTCTTC	2 cut(s)	522, 602
BstAPI	GCANNNNNTGC	1 cut(s)	812
BstC8I	GCNNGC	3 cut(s)	117, 519, 813
BstDEI	CTNAG	3 cut(s)	283, 396, 684
BstF5I	GGATG	6 cut(s)	8, 52, 90, 109, 229, 763
BstFNI	CGCG	1 cut(s)	552
BstKTI	GATC	1 cut(s)	838
BstMBI	GATC	1 cut(s)	835
BstMWI	GCNNNNNNNGC	4 cut(s)	389, 398, 561, 812
BstNI	CCWGG	1 cut(s)	171
BstNSI	RCATGY	2 cut(s)	76, 669
BstSCI	CCNGG	1 cut(s)	169
BstUI	CGCG	1 cut(s)	552
BstV1I	GCAGC	2 cut(s)	379, 624
BstV2I	GAAGAC	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	835
BstXI	CCANNNNNNTGG	1 cut(s)	360
BstYI	RGATCY	1 cut(s)	835
Bsu36I	CCTNAGG	1 cut(s)	684
BsuI	GTATCC	1 cut(s)	248
BsuRI	GGCC	2 cut(s)	517, 774
BtgZI	GCGATG	1 cut(s)	627
BtsCI	GGATG	6 cut(s)	8, 52, 90, 109, 229, 763
BtsIMutI	CAGTG	2 cut(s)	135, 484
Cac8I	GCNNGC	3 cut(s)	117, 519, 813
Cfr13I	GGNCC	1 cut(s)	772
Csp6I	GTAC	1 cut(s)	431
CviAII	CATG	4 cut(s)	73, 583, 666, 856
CviQI	GTAC	1 cut(s)	431
DdeI	CTNAG	3 cut(s)	283, 396, 684
DpnI	GATC	1 cut(s)	837
DpnII	GATC	1 cut(s)	835
Eam1104I	CTCTTC	2 cut(s)	522, 602
EarI	CTCTTC	2 cut(s)	522, 602
Eco81I	CCTNAGG	1 cut(s)	684
EcoO109I	RGGNCCY	1 cut(s)	772
EcoRII	CCWGG	1 cut(s)	169
FaeI	CATG	4 cut(s)	76, 586, 669, 859
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FaqI	GGGAC	1 cut(s)	377
FatI	CATG	4 cut(s)	72, 582, 665, 855
FauI	CCCGC	1 cut(s)	686
FauNDI	CATATG	1 cut(s)	765
Fnu4HI	GCNGC	3 cut(s)	393, 553, 638
FokI	GGATG	5 cut(s)	59, 97, 116, 216, 770
Fsp4HI	GCNGC	3 cut(s)	393, 553, 638
FspBI	CTAG	1 cut(s)	827
GluI	GCNGC	3 cut(s)	393, 553, 638
HaeIII	GGCC	2 cut(s)	517, 774
Hin1II	CATG	4 cut(s)	76, 586, 669, 859
HincII	GTYRAC	2 cut(s)	133, 706
HindII	GTYRAC	2 cut(s)	133, 706
HindIII	AAGCTT	1 cut(s)	310
HinfI	GANTC	3 cut(s)	372, 895, 909
Hpy166II	GTNNAC	3 cut(s)	133, 433, 706
Hpy188I	TCNGA	2 cut(s)	424, 651
Hpy188III	TCNNGA	4 cut(s)	18, 157, 686, 827
Hpy8I	GTNNAC	3 cut(s)	133, 433, 706
HpyAV	CCTTC	4 cut(s)	37, 132, 340, 861
HpyCH4III	ACNGT	4 cut(s)	130, 260, 419, 479
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	7 cut(s)	35, 119, 415, 482, 506, 745, 761
HpyF10VI	GCNNNNNNNGC	4 cut(s)	389, 398, 561, 812
HpyF3I	CTNAG	3 cut(s)	283, 396, 684
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	4 cut(s)	76, 586, 669, 859
Kzo9I	GATC	1 cut(s)	835
LguI	GCTCTTC	1 cut(s)	602
LmnI	GCTCC	1 cut(s)	389
Lsp1109I	GCAGC	2 cut(s)	379, 624
LweI	GCATC	4 cut(s)	17, 37, 748, 803
MaeI	CTAG	1 cut(s)	827
MaeII	ACGT	1 cut(s)	186
MalI	GATC	1 cut(s)	837
MboI	GATC	1 cut(s)	835
MboII	GAAGA	5 cut(s)	194, 286, 539, 619, 774
MflI	RGATCY	1 cut(s)	835
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	8 cut(s)	58, 278, 335, 493, 645, 693, 875, 884
MlyI	GAGTC	1 cut(s)	366
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	6 cut(s)	75, 199, 507, 693, 763, 874
MroXI	GAANNNNTTC	2 cut(s)	278, 894
MseI	TTAA	1 cut(s)	659
MslI	CAYNNNNRTG	2 cut(s)	140, 438
MspA1I	CMGCKG	1 cut(s)	521
MspR9I	CCNGG	1 cut(s)	171
MvaI	CCWGG	1 cut(s)	171
MvnI	CGCG	1 cut(s)	552
MwoI	GCNNNNNNNGC	4 cut(s)	389, 398, 561, 812
NdeI	CATATG	1 cut(s)	765
NdeII	GATC	1 cut(s)	835
NlaIII	CATG	4 cut(s)	76, 586, 669, 859
NlaIV	GGNNCC	1 cut(s)	351
NspI	RCATGY	2 cut(s)	76, 669
PciSI	GCTCTTC	1 cut(s)	602
PcsI	WCGNNNNNNNCGW	1 cut(s)	904
PdmI	GAANNNNTTC	2 cut(s)	278, 894
PfeI	GAWTC	2 cut(s)	895, 909
PkrI	GCNGC	3 cut(s)	394, 554, 639
PleI	GAGTC	1 cut(s)	366
PpsI	GAGTC	1 cut(s)	366
Psp6I	CCWGG	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	351
PspPI	GGNCC	1 cut(s)	772
PsuI	RGATCY	1 cut(s)	835
PvuII	CAGCTG	1 cut(s)	521
RsaI	GTAC	1 cut(s)	432
RsaNI	GTAC	1 cut(s)	431
RseI	CAYNNNNRTG	2 cut(s)	140, 438
SapI	GCTCTTC	1 cut(s)	602
SaqAI	TTAA	1 cut(s)	659
SatI	GCNGC	3 cut(s)	393, 553, 638
Sau3AI	GATC	1 cut(s)	835
Sau96I	GGNCC	1 cut(s)	772
SchI	GAGTC	1 cut(s)	366
ScrFI	CCNGG	1 cut(s)	171
SduI	GDGCHC	1 cut(s)	213
SfaNI	GCATC	4 cut(s)	17, 37, 748, 803
SmiMI	CAYNNNNRTG	2 cut(s)	140, 438
SmlI	CTYRAG	1 cut(s)	16
SmoI	CTYRAG	1 cut(s)	16
Sse9I	AATT	8 cut(s)	58, 278, 335, 493, 645, 693, 875, 884
SsiI	CCGC	2 cut(s)	552, 679
SspMI	CTAG	1 cut(s)	827
StyD4I	CCNGG	1 cut(s)	169
TaaI	ACNGT	4 cut(s)	130, 260, 419, 479
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	2 cut(s)	180, 512
TasI	AATT	8 cut(s)	58, 278, 335, 493, 645, 693, 875, 884
TauI	GCSGC	1 cut(s)	555
TfiI	GAWTC	2 cut(s)	895, 909
Tru1I	TTAA	1 cut(s)	659
Tru9I	TTAA	1 cut(s)	659
TscAI	CASTG	2 cut(s)	142, 484
TseI	GCWGC	2 cut(s)	392, 637
TspDTI	ATGAA	1 cut(s)	540
TspGWI	ACGGA	1 cut(s)	907
TspRI	CASTG	2 cut(s)	142, 484
XapI	RAATTY	5 cut(s)	58, 278, 335, 493, 645
XbaI	TCTAGA	1 cut(s)	826
XceI	RCATGY	2 cut(s)	76, 669
XmnI	GAANNNNTTC	2 cut(s)	278, 894
XspI	CTAG	1 cut(s)	827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.