Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003491

Physical Location & Seq

Genomic Coordinates Forward (+)

6312038 .. 6315330

Gene Structure 3293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g09150.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGGGAATTGCTGGACATCTCATGATCCTCATCCCAACAAATACATACCTTCAACTCCAGGGACATCGGGAACTCACAGCAAGAACATATTATCAAACACAAGCAGCAGTGTAGGAAGAAGTCAGTTTTCAGAAGCATCATCAAGCCCAAAAATTGAAGAATTACAATCACAACAACCCAATGGGCAGATTTTGGAGTCCCCAAACTTGAGAGTCTTCACTTTTGCAGAGATGAAGGCTGCCACCAGAAATTTCAAGTCAGATGCAGTTCTTGGTGAGGGAGGATTTGGGATAGTTTTCAAAGGTTGGGTGGATGACAAAACACTTCAGCCTTCAAAAGCTGGCACTGGAATGATGGTTGCTATAAAGAAATTGAACCCGGAAAATGGGCAAGGATTTCAAGAGTGGCAGTCGGAAGTGAATTTTCTAGGTCGGCTTTCGCATCCGAACCTCGTGAAGCTATTAGGTTACTGTTGGGAAGACAAAGAACTACTCCTTGTTTATGAGTTCATGCAGAAAGGAAGTTTGGAGAATCATCTTTTCAGAAGGAGTGCGGGCATTGAACCACTTTCTTGGGACAGAAGACTAAAAATAGCTATCGGAGCAGCCCGAGGCCTGGCCTTCTTACACAGTTCAGAAAAGAAAATCATCTACAGAGATTTTAAGGCCTCAAATATATTGCTTGATGGGAGTTTCAATGCAAAAATCTCAGATTTTGGCTTGGCGAAATTGGGGCCAGTTGGTGGAGAATCACATGTTTCGACTAGGGTCGTGGGAACATATGGTTATGCTGCTCCAGAATACATTGCAACAGGCCATTTGTACGTGAAGAGCGATGTGTATGGATTCGGCGTTGTCTTGCTTGAAATTCTGACAGGGCTACGAGCACTTGATCTGAAACGTCCCAAGGAACAACAACAACTTGTAGAATGGGCTAAACCACTTCTACTGAACAAAAGAAAGCTGAAAACTATTTTGGATGTGCGGATGGAAGGCCAATATGCCTTCAAGGCAGCAATGCAGACAGCACAGATTACTGAAAAATGCTTAGCGCCGGACCCTAAAAGCAGGCCTTCCATGATAGAAATCGTGGAGCAATTGAAACAAATTCGAGCAATCAAGGAACAACCAAAACAATCCAAACTTACATCTGTGCAAGCCACTTTTACTTTTGGAGCCAATAAACAGTCGATTCGCCGTTCATCGTATGATTCTAGGTTTCATAGCTCTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

412

Amino Acids

45.75

Weight (kDa)

9.54

Isoelectric Point (pI)

48.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35600 AT4G35600
fragaria_vesca	FvH4_1g10470 FvH4_1g10470 FvH4_1g10470 FvH4_1g14300 FvH4_1g14300 FvH4_1g15410 FvH4_1g15410 FvH4_1g15410 FvH4_1g15410
malus_domestica	MD02G1117900.v1.1 MD15G1232600.v1.1
prunus_persica	Prupe.7G181500_v2.0.a1
pyrus_communis	pycom02g09150 pycom15g20700
rosa_chinensis	RchiOBHm_Chr2g0097331 RchiOBHm_Chr2g0102961
rosa_laevigata	RLG00000009020 RLG00000016718 RLG00000017194 RLG00000017335
rosa_multiflora	Rmu_sc0000388.1_g000037 Rmu_sc0001060.1_g000013 Rmu_sc0035636.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144760 Rroxscaffold_5G00347840
rosa_rugosa	Rorug02G0065900 Rorug02G0065900 Rorug02G0110700
rosa_samantha	Rh2CG117400 Rh2CG165600 Rh2DG116600
rosa_wichuraiana	Rw2G008810 Rw2G012430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	743
AciI	CCGC	2 cut(s)	554, 985
AclWI	GGATC	1 cut(s)	20
AcsI	RAATTY	4 cut(s)	250, 421, 867, 1107
AcuI	CTGAAG	1 cut(s)	311
AfaI	GTAC	1 cut(s)	824
AfiI	CCNNNNNNNGG	3 cut(s)	386, 616, 743
AflIII	ACRYGT	1 cut(s)	754
AjnI	CCWGG	2 cut(s)	58, 615
AjuI	GAANNNNNNNTTGG	4 cut(s)	509, 541, 959, 991
AluBI	AGCT	5 cut(s)	341, 460, 596, 964, 1227
AluI	AGCT	5 cut(s)	341, 460, 596, 964, 1227
Alw21I	GWGCWC	1 cut(s)	889
AlwI	GGATC	1 cut(s)	20
Ama87I	CYCGRG	1 cut(s)	609
AoxI	GGCC	7 cut(s)	613, 618, 666, 734, 814, 994, 1070
ApeKI	GCWGC	5 cut(s)	105, 239, 605, 791, 1013
ApoI	RAATTY	4 cut(s)	250, 421, 867, 1107
AspLEI	GCGC	1 cut(s)	1054
AspS9I	GGNCC	2 cut(s)	734, 1057
AsuC2I	CCSGG	1 cut(s)	380
AsuHPI	GGTGA	1 cut(s)	287
AvaI	CYCGRG	1 cut(s)	609
AvaII	GGWCC	1 cut(s)	1057
BauI	CACGAG	1 cut(s)	452
BbsI	GAAGAC	3 cut(s)	208, 486, 589
Bbv12I	GWGCWC	1 cut(s)	889
BbvI	GCAGC	5 cut(s)	117, 226, 617, 778, 1025
BccI	CCATC	3 cut(s)	349, 680, 982
BceAI	ACGGC	1 cut(s)	1182
BciT130I	CCWGG	2 cut(s)	60, 617
BcnI	CCSGG	1 cut(s)	380
BfaI	CTAG	3 cut(s)	428, 765, 1215
BfmI	CTRYAG	1 cut(s)	652
BfoI	RGCGCY	1 cut(s)	1055
BglI	GCCNNNNNGGC	1 cut(s)	1010
BisI	GCNGC	5 cut(s)	106, 240, 606, 792, 1014
BlpI	GCTNAGC	1 cut(s)	1048
BlsI	GCNGC	5 cut(s)	107, 241, 607, 793, 1015
Bme1390I	CCNGG	3 cut(s)	60, 380, 617
Bme18I	GGWCC	1 cut(s)	1057
BmeT110I	CYCGRG	1 cut(s)	609
BmgT120I	GGNCC	2 cut(s)	734, 1057
BmiI	GGNNCC	3 cut(s)	735, 1059, 1177
BmrFI	CCNGG	3 cut(s)	60, 380, 617
BmsI	GCATC	3 cut(s)	146, 253, 451
BoxI	GACNNNNGTC	1 cut(s)	767
BpiI	GAAGAC	3 cut(s)	208, 486, 589
BpmI	CTGGAG	2 cut(s)	42, 780
Bpu1102I	GCTNAGC	1 cut(s)	1048
BpuEI	CTTGAG	1 cut(s)	229
BpuMI	CCSGG	1 cut(s)	380
BsaAI	YACGTR	1 cut(s)	826
BsaBI	GATNNNNATC	2 cut(s)	30, 1085
BsaJI	CCNNGG	3 cut(s)	59, 610, 906
Bsc4I	CCNNNNNNNGG	3 cut(s)	386, 616, 743
Bse1I	ACTGG	2 cut(s)	352, 737
Bse3DI	GCAATG	2 cut(s)	804, 1023
Bse8I	GATNNNNATC	2 cut(s)	30, 1085
BseBI	CCWGG	2 cut(s)	60, 617
BseDI	CCNNGG	3 cut(s)	59, 610, 906
BseGI	GGATG	5 cut(s)	31, 319, 442, 985, 993
BseJI	GATNNNNATC	2 cut(s)	30, 1085
BseLI	CCNNNNNNNGG	3 cut(s)	386, 616, 743
BseMI	GCAATG	2 cut(s)	804, 1023
BseMII	CTCAG	1 cut(s)	723
BseNI	ACTGG	2 cut(s)	352, 737
BseXI	GCAGC	5 cut(s)	117, 226, 617, 778, 1025
BshFI	GGCC	7 cut(s)	615, 620, 668, 736, 816, 996, 1072
BsiHKAI	GWGCWC	1 cut(s)	889
BsiHKCI	CYCGRG	1 cut(s)	609
BsiSI	CCGG	2 cut(s)	380, 1055
BslFI	GGGAC	4 cut(s)	76, 184, 590, 888
BslI	CCNNNNNNNGG	3 cut(s)	386, 616, 743
BsmFI	GGGAC	4 cut(s)	76, 184, 590, 888
BsnI	GGCC	7 cut(s)	615, 620, 668, 736, 816, 996, 1072
BsoBI	CYCGRG	1 cut(s)	609
Bsp1286I	GDGCHC	1 cut(s)	889
Bsp143I	GATC	2 cut(s)	25, 892
Bsp1720I	GCTNAGC	1 cut(s)	1048
BspACI	CCGC	2 cut(s)	554, 985
BspANI	GGCC	7 cut(s)	615, 620, 668, 736, 816, 996, 1072
BspCNI	CTCAG	1 cut(s)	722
BspHI	TCATGA	1 cut(s)	22
BspLI	GGNNCC	3 cut(s)	735, 1059, 1177
BspPI	GGATC	1 cut(s)	20
BspQI	GCTCTTC	1 cut(s)	824
BsrDI	GCAATG	2 cut(s)	804, 1023
BsrI	ACTGG	2 cut(s)	352, 737
BssECI	CCNNGG	3 cut(s)	59, 610, 906
BssMI	GATC	2 cut(s)	25, 892
BssSI	CACGAG	1 cut(s)	452
BssT1I	CCWWGG	1 cut(s)	906
Bst2BI	CACGAG	1 cut(s)	452
Bst2UI	CCWGG	2 cut(s)	60, 617
Bst4CI	ACNGT	3 cut(s)	473, 632, 1188
Bst6I	CTCTTC	1 cut(s)	824
BstBAI	YACGTR	1 cut(s)	826
BstC8I	GCNNGC	4 cut(s)	343, 556, 1070, 1158
BstDEI	CTNAG	2 cut(s)	709, 1048
BstF5I	GGATG	5 cut(s)	31, 319, 442, 985, 993
BstH2I	RGCGCY	1 cut(s)	1055
BstHHI	GCGC	1 cut(s)	1054
BstKTI	GATC	2 cut(s)	28, 895
BstMBI	GATC	2 cut(s)	25, 892
BstMWI	GCNNNNNNNGC	2 cut(s)	602, 1010
BstNI	CCWGG	2 cut(s)	60, 617
BstNSI	RCATGY	1 cut(s)	758
BstPAI	GACNNNNGTC	1 cut(s)	767
BstSCI	CCNGG	3 cut(s)	58, 378, 615
BstSFI	CTRYAG	1 cut(s)	652
BstV1I	GCAGC	5 cut(s)	117, 226, 617, 778, 1025
BstV2I	GAAGAC	3 cut(s)	208, 486, 589
BstXI	CCANNNNNNTGG	1 cut(s)	573
BsuRI	GGCC	7 cut(s)	615, 620, 668, 736, 816, 996, 1072
BtgZI	GCGATG	1 cut(s)	849
BtsCI	GGATG	5 cut(s)	31, 319, 442, 985, 993
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	2 cut(s)	115, 345
Cac8I	GCNNGC	4 cut(s)	343, 556, 1070, 1158
CciI	TCATGA	1 cut(s)	22
CfoI	GCGC	1 cut(s)	1054
Cfr13I	GGNCC	2 cut(s)	734, 1057
Csp6I	GTAC	1 cut(s)	823
CviAII	CATG	4 cut(s)	23, 511, 755, 1078
CviQI	GTAC	1 cut(s)	823
DdeI	CTNAG	2 cut(s)	709, 1048
DpnI	GATC	2 cut(s)	27, 894
DpnII	GATC	2 cut(s)	25, 892
Eam1104I	CTCTTC	1 cut(s)	824
EarI	CTCTTC	1 cut(s)	824
Eco130I	CCWWGG	1 cut(s)	906
Eco147I	AGGCCT	3 cut(s)	615, 668, 1072
Eco47I	GGWCC	1 cut(s)	1057
Eco57I	CTGAAG	1 cut(s)	311
Eco88I	CYCGRG	1 cut(s)	609
EcoRII	CCWGG	2 cut(s)	58, 615
EcoT14I	CCWWGG	1 cut(s)	906
ErhI	CCWWGG	1 cut(s)	906
FaeI	CATG	4 cut(s)	26, 514, 758, 1081
FalI	AAGNNNNNCTT	2 cut(s)	1057, 1089
FaqI	GGGAC	4 cut(s)	76, 184, 590, 888
FatI	CATG	4 cut(s)	22, 510, 754, 1077
FauI	CCCGC	1 cut(s)	547
FauNDI	CATATG	1 cut(s)	781
Fnu4HI	GCNGC	5 cut(s)	106, 240, 606, 792, 1014
FokI	GGATG	5 cut(s)	18, 326, 429, 992, 1000
Fsp4HI	GCNGC	5 cut(s)	106, 240, 606, 792, 1014
FspBI	CTAG	3 cut(s)	428, 765, 1215
GlaI	GCGC	1 cut(s)	1053
GluI	GCNGC	5 cut(s)	106, 240, 606, 792, 1014
GsuI	CTGGAG	2 cut(s)	42, 780
HaeII	RGCGCY	1 cut(s)	1055
HaeIII	GGCC	7 cut(s)	615, 620, 668, 736, 816, 996, 1072
HapII	CCGG	2 cut(s)	380, 1055
HhaI	GCGC	1 cut(s)	1054
Hin1II	CATG	4 cut(s)	26, 514, 758, 1081
Hin6I	GCGC	1 cut(s)	1052
HinP1I	GCGC	1 cut(s)	1052
HinfI	GANTC	7 cut(s)	197, 213, 532, 749, 846, 1192, 1211
HpaII	CCGG	2 cut(s)	380, 1055
HphI	GGTGA	1 cut(s)	287
Hpy188III	TCNNGA	5 cut(s)	23, 69, 401, 454, 797
HpyAV	CCTTC	8 cut(s)	60, 229, 342, 540, 631, 986, 1015, 1083
HpyCH4III	ACNGT	3 cut(s)	473, 632, 1188
HpyCH4IV	ACGT	2 cut(s)	825, 901
HpyCH4V	TGCA	7 cut(s)	227, 266, 514, 701, 809, 1021, 1156
HpyF10VI	GCNNNNNNNGC	2 cut(s)	602, 1010
HpyF3I	CTNAG	2 cut(s)	709, 1048
HpySE526I	ACGT	2 cut(s)	825, 901
Hsp92II	CATG	4 cut(s)	26, 514, 758, 1081
HspAI	GCGC	1 cut(s)	1052
Kzo9I	GATC	2 cut(s)	25, 892
LguI	GCTCTTC	1 cut(s)	824
LmnI	GCTCC	4 cut(s)	602, 799, 1093, 1175
Lsp1109I	GCAGC	5 cut(s)	117, 226, 617, 778, 1025
LweI	GCATC	3 cut(s)	146, 253, 451
MaeI	CTAG	3 cut(s)	428, 765, 1215
MaeII	ACGT	2 cut(s)	825, 901
MaeIII	GTNAC	1 cut(s)	467
MalI	GATC	2 cut(s)	27, 894
MboI	GATC	2 cut(s)	25, 892
MboII	GAAGA	6 cut(s)	129, 170, 208, 491, 594, 841
MfeI	CAATTG	1 cut(s)	1097
MhlI	GDGCHC	1 cut(s)	889
MlyI	GAGTC	2 cut(s)	206, 222
MmeI	TCCRAC	1 cut(s)	393
MnlI	CCTC	6 cut(s)	39, 271, 275, 461, 605, 679
MseI	TTAA	1 cut(s)	663
MslI	CAYNNNNRTG	1 cut(s)	350
MspI	CCGG	2 cut(s)	380, 1055
MspR9I	CCNGG	3 cut(s)	60, 380, 617
MunI	CAATTG	1 cut(s)	1097
MvaI	CCWGG	2 cut(s)	60, 617
MwoI	GCNNNNNNNGC	2 cut(s)	602, 1010
NciI	CCSGG	1 cut(s)	380
NdeI	CATATG	1 cut(s)	781
NdeII	GATC	2 cut(s)	25, 892
NlaIII	CATG	4 cut(s)	26, 514, 758, 1081
NlaIV	GGNNCC	3 cut(s)	735, 1059, 1177
NspI	RCATGY	1 cut(s)	758
PagI	TCATGA	1 cut(s)	22
PceI	AGGCCT	3 cut(s)	615, 668, 1072
PciI	ACATGT	1 cut(s)	754
PciSI	GCTCTTC	1 cut(s)	824
PcsI	WCGNNNNNNNCGW	1 cut(s)	831
PfeI	GAWTC	5 cut(s)	532, 749, 846, 1192, 1211
PflMI	CCANNNNNTGG	1 cut(s)	743
PkrI	GCNGC	5 cut(s)	107, 241, 607, 793, 1015
PleI	GAGTC	2 cut(s)	205, 221
PpsI	GAGTC	2 cut(s)	205, 221
Ppu21I	YACGTR	1 cut(s)	826
PscI	ACATGT	1 cut(s)	754
PshAI	GACNNNNGTC	1 cut(s)	767
Psp6I	CCWGG	2 cut(s)	58, 615
PspGI	CCWGG	2 cut(s)	58, 615
PspN4I	GGNNCC	3 cut(s)	735, 1059, 1177
PspPI	GGNCC	2 cut(s)	734, 1057
RsaI	GTAC	1 cut(s)	824
RsaNI	GTAC	1 cut(s)	823
RseI	CAYNNNNRTG	1 cut(s)	350
SapI	GCTCTTC	1 cut(s)	824
SaqAI	TTAA	1 cut(s)	663
SatI	GCNGC	5 cut(s)	106, 240, 606, 792, 1014
Sau3AI	GATC	2 cut(s)	25, 892
Sau96I	GGNCC	2 cut(s)	734, 1057
SchI	GAGTC	2 cut(s)	206, 222
ScrFI	CCNGG	3 cut(s)	60, 380, 617
SduI	GDGCHC	1 cut(s)	889
SfaNI	GCATC	3 cut(s)	146, 253, 451
SfcI	CTRYAG	1 cut(s)	652
SinI	GGWCC	1 cut(s)	1057
SmiMI	CAYNNNNRTG	1 cut(s)	350
SmlI	CTYRAG	1 cut(s)	208
SmoI	CTYRAG	1 cut(s)	208
SseBI	AGGCCT	3 cut(s)	615, 668, 1072
SsiI	CCGC	2 cut(s)	554, 985
SspMI	CTAG	3 cut(s)	428, 765, 1215
StuI	AGGCCT	3 cut(s)	615, 668, 1072
StyD4I	CCNGG	3 cut(s)	58, 378, 615
StyI	CCWWGG	1 cut(s)	906
TaaI	ACNGT	3 cut(s)	473, 632, 1188
TaiI	ACGT	2 cut(s)	828, 904
TaqI	TCGA	3 cut(s)	761, 1111, 1190
TfiI	GAWTC	5 cut(s)	532, 749, 846, 1192, 1211
Tru1I	TTAA	1 cut(s)	663
Tru9I	TTAA	1 cut(s)	663
TscAI	CASTG	2 cut(s)	115, 352
TseI	GCWGC	5 cut(s)	105, 239, 605, 791, 1013
TspDTI	ATGAA	4 cut(s)	248, 499, 1191, 1211
TspRI	CASTG	2 cut(s)	115, 352
Van91I	CCANNNNNTGG	1 cut(s)	743
VpaK11BI	GGWCC	1 cut(s)	1057
XapI	RAATTY	4 cut(s)	250, 421, 867, 1107
XceI	RCATGY	1 cut(s)	758
XspI	CTAG	3 cut(s)	428, 765, 1215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.