Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035636.1

Orthogroup ID

OG0003491

Physical Location & Seq

Genomic Coordinates Forward (+)

64 .. 1941

Gene Structure 1878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035636.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

atgagaagtcaattttctcatttttcagaagcaacaacatcaacactaagcccaagatttgatgatgatcaggagtcaacggatggcgaaattttggagacatcaactttgagagtcttcagttttgcagatatgaaatctgctaccaagaacttcaagtcagatcaaattctgggtgagggaggatttggtagagttttcaaaggttgggtggatgagaaaactcttcaaccatgtaaggctggcactggaatgatggttgctgtcaagaaattaaaccctgaaagtatgcaaggtttccaagagtggcagtcagaagtgaactttctaggaaggctttctcatcccaaccttgtcaagctattgggatactgttgggaagacacggaactactccttgtttatgagttcatgcagaaaggtagcttggagaatcaccttttcagaaggaatcctaacattgaaccactatcttgggacattagaatcagaatagctattggagcagctcgaggcctagcattcttgcacagttcagaaaagcaaatcatatatagagatttcaaggcctcaaatatattgcttgatgggaattataatgcaaaaatctcagattttggcttggcgaaattgggaccaactggtggagactcacatgtgtcaactagagttatggggacatatggttatgctgctccagaatacattgcaacaggtaatgatatctatagtaaaaatggaagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

248

Amino Acids

27.72

Weight (kDa)

5.99

Isoelectric Point (pI)

28.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35600 AT4G35600
fragaria_vesca	FvH4_1g10470 FvH4_1g10470 FvH4_1g10470 FvH4_1g14300 FvH4_1g14300 FvH4_1g15410 FvH4_1g15410 FvH4_1g15410 FvH4_1g15410
malus_domestica	MD02G1117900.v1.1 MD15G1232600.v1.1
prunus_persica	Prupe.7G181500_v2.0.a1
pyrus_communis	pycom02g09150 pycom15g20700
rosa_chinensis	RchiOBHm_Chr2g0097331 RchiOBHm_Chr2g0102961
rosa_laevigata	RLG00000009020 RLG00000016718 RLG00000017194 RLG00000017335
rosa_multiflora	Rmu_sc0000388.1_g000037 Rmu_sc0001060.1_g000013 Rmu_sc0035636.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144760 Rroxscaffold_5G00347840
rosa_rugosa	Rorug02G0065900 Rorug02G0065900 Rorug02G0110700
rosa_samantha	Rh2CG117400 Rh2CG165600 Rh2DG116600
rosa_wichuraiana	Rw2G008810 Rw2G012430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	597
AccB7I	CCANNNNNTGG	1 cut(s)	644
AcsI	RAATTY	2 cut(s)	90, 168
AcuI	CTGAAG	1 cut(s)	103
AfiI	CCNNNNNNNGG	1 cut(s)	644
AflIII	ACRYGT	1 cut(s)	655
AgsI	TTSAA	5 cut(s)	157, 202, 230, 464, 565
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AluBI	AGCT	5 cut(s)	361, 426, 497, 509, 744
AluI	AGCT	5 cut(s)	361, 426, 497, 509, 744
Alw26I	GTCTC	2 cut(s)	92, 642
Ama87I	CYCGRG	1 cut(s)	510
AoxI	GGCC	2 cut(s)	514, 567
ApeKI	GCWGC	2 cut(s)	506, 692
ApoI	RAATTY	2 cut(s)	90, 168
ArsI	GACNNNNNNTTYG	2 cut(s)	91, 123
Asp700I	GAANNNNTTC	1 cut(s)	337
AspS9I	GGNCC	1 cut(s)	635
AsuHPI	GGTGA	2 cut(s)	188, 428
AvaI	CYCGRG	1 cut(s)	510
AvaII	GGWCC	1 cut(s)	635
BbsI	GAAGAC	2 cut(s)	109, 387
BbvI	GCAGC	2 cut(s)	518, 679
BccI	CCATC	3 cut(s)	77, 250, 581
BciVI	GTATCC	1 cut(s)	362
BclI	TGATCA	1 cut(s)	67
BcoDI	GTCTC	2 cut(s)	92, 642
BfaI	CTAG	3 cut(s)	329, 518, 666
BfmI	CTRYAG	1 cut(s)	727
BfuI	GTATCC	1 cut(s)	362
BisI	GCNGC	2 cut(s)	507, 693
BlsI	GCNGC	2 cut(s)	508, 694
Bme18I	GGWCC	1 cut(s)	635
BmeT110I	CYCGRG	1 cut(s)	510
BmgT120I	GGNCC	1 cut(s)	635
BmiI	GGNNCC	1 cut(s)	636
BpiI	GAAGAC	2 cut(s)	109, 387
BpmI	CTGGAG	1 cut(s)	681
BsaBI	GATNNNNATC	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	1 cut(s)	644
Bse1I	ACTGG	2 cut(s)	253, 646
Bse3DI	GCAATG	1 cut(s)	705
Bse8I	GATNNNNATC	1 cut(s)	66
BseGI	GGATG	3 cut(s)	88, 220, 343
BseJI	GATNNNNATC	1 cut(s)	66
BseLI	CCNNNNNNNGG	1 cut(s)	644
BseMI	GCAATG	1 cut(s)	705
BseMII	CTCAG	1 cut(s)	624
BseNI	ACTGG	2 cut(s)	253, 646
BseXI	GCAGC	2 cut(s)	518, 679
BshFI	GGCC	2 cut(s)	516, 569
BsiHKCI	CYCGRG	1 cut(s)	510
BslFI	GGGAC	3 cut(s)	491, 648, 691
BslI	CCNNNNNNNGG	1 cut(s)	644
BsmAI	GTCTC	2 cut(s)	92, 642
BsmFI	GGGAC	3 cut(s)	491, 648, 691
BsmI	GAATGC	1 cut(s)	521
BsnI	GGCC	2 cut(s)	516, 569
BsoBI	CYCGRG	1 cut(s)	510
Bsp143I	GATC	2 cut(s)	67, 163
BspANI	GGCC	2 cut(s)	516, 569
BspCNI	CTCAG	1 cut(s)	623
BspLI	GGNNCC	1 cut(s)	636
BsrDI	GCAATG	1 cut(s)	705
BsrI	ACTGG	2 cut(s)	253, 646
BssMI	GATC	2 cut(s)	67, 163
Bst4CI	ACNGT	2 cut(s)	374, 533
Bst6I	CTCTTC	1 cut(s)	231
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	2 cut(s)	47, 610
BstF5I	GGATG	3 cut(s)	88, 220, 343
BstKTI	GATC	2 cut(s)	70, 166
BstMAI	GTCTC	2 cut(s)	92, 642
BstMBI	GATC	2 cut(s)	67, 163
BstMWI	GCNNNNNNNGC	1 cut(s)	503
BstNSI	RCATGY	1 cut(s)	659
BstSFI	CTRYAG	1 cut(s)	727
BstV1I	GCAGC	2 cut(s)	518, 679
BstV2I	GAAGAC	2 cut(s)	109, 387
BstXI	CCANNNNNNTGG	1 cut(s)	474
BsuI	GTATCC	1 cut(s)	362
BsuRI	GGCC	2 cut(s)	516, 569
BtsCI	GGATG	3 cut(s)	88, 220, 343
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	1 cut(s)	244
Cfr13I	GGNCC	1 cut(s)	635
CviAII	CATG	3 cut(s)	234, 412, 656
DdeI	CTNAG	2 cut(s)	47, 610
DpnI	GATC	2 cut(s)	69, 165
DpnII	GATC	2 cut(s)	67, 163
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
Eco147I	AGGCCT	2 cut(s)	516, 569
Eco32I	GATATC	1 cut(s)	724
Eco47I	GGWCC	1 cut(s)	635
Eco57I	CTGAAG	1 cut(s)	103
Eco88I	CYCGRG	1 cut(s)	510
EcoRV	GATATC	1 cut(s)	724
FaeI	CATG	3 cut(s)	237, 415, 659
FaqI	GGGAC	3 cut(s)	491, 648, 691
FatI	CATG	3 cut(s)	233, 411, 655
FauNDI	CATATG	1 cut(s)	682
FbaI	TGATCA	1 cut(s)	67
Fnu4HI	GCNGC	2 cut(s)	507, 693
FokI	GGATG	3 cut(s)	95, 227, 330
Fsp4HI	GCNGC	2 cut(s)	507, 693
FspBI	CTAG	3 cut(s)	329, 518, 666
GluI	GCNGC	2 cut(s)	507, 693
GsuI	CTGGAG	1 cut(s)	681
HaeIII	GGCC	2 cut(s)	516, 569
Hin1II	CATG	3 cut(s)	237, 415, 659
HincII	GTYRAC	2 cut(s)	78, 663
HindII	GTYRAC	2 cut(s)	78, 663
HinfI	GANTC	6 cut(s)	74, 114, 433, 451, 486, 650
HphI	GGTGA	2 cut(s)	188, 428
Hpy166II	GTNNAC	3 cut(s)	78, 322, 663
Hpy188I	TCNGA	7 cut(s)	28, 163, 316, 446, 491, 538, 613
Hpy188III	TCNNGA	3 cut(s)	71, 268, 698
Hpy8I	GTNNAC	3 cut(s)	78, 322, 663
HpyAV	CCTTC	2 cut(s)	327, 441
HpyCH4III	ACNGT	2 cut(s)	374, 533
HpyCH4V	TGCA	6 cut(s)	128, 292, 415, 529, 602, 710
HpyF10VI	GCNNNNNNNGC	1 cut(s)	503
HpyF3I	CTNAG	2 cut(s)	47, 610
Hsp92II	CATG	3 cut(s)	237, 415, 659
Ksp22I	TGATCA	1 cut(s)	67
Kzo9I	GATC	2 cut(s)	67, 163
LmnI	GCTCC	2 cut(s)	503, 700
LpnPI	CCDG	8 cut(s)	56, 158, 228, 234, 294, 627, 699, 711
Lsp1109I	GCAGC	2 cut(s)	518, 679
MaeI	CTAG	3 cut(s)	329, 518, 666
MalI	GATC	2 cut(s)	69, 165
MboI	GATC	2 cut(s)	67, 163
MboII	GAAGA	3 cut(s)	109, 218, 392
MluCI	AATT	6 cut(s)	11, 90, 168, 272, 592, 629
MlyI	GAGTC	3 cut(s)	83, 123, 644
MnlI	CCTC	4 cut(s)	172, 176, 506, 580
MroXI	GAANNNNTTC	1 cut(s)	337
MseI	TTAA	1 cut(s)	275
MslI	CAYNNNNRTG	1 cut(s)	251
Mva1269I	GAATGC	1 cut(s)	521
MwoI	GCNNNNNNNGC	1 cut(s)	503
NdeI	CATATG	1 cut(s)	682
NdeII	GATC	2 cut(s)	67, 163
NlaIII	CATG	3 cut(s)	237, 415, 659
NlaIV	GGNNCC	1 cut(s)	636
NspI	RCATGY	1 cut(s)	659
PaeR7I	CTCGAG	1 cut(s)	510
PceI	AGGCCT	2 cut(s)	516, 569
PciI	ACATGT	1 cut(s)	655
PctI	GAATGC	1 cut(s)	521
PdmI	GAANNNNTTC	1 cut(s)	337
PfeI	GAWTC	3 cut(s)	433, 451, 486
PflMI	CCANNNNNTGG	1 cut(s)	644
PkrI	GCNGC	2 cut(s)	508, 694
PleI	GAGTC	3 cut(s)	82, 122, 644
PpsI	GAGTC	3 cut(s)	82, 122, 644
PscI	ACATGT	1 cut(s)	655
PsiI	TTATAA	1 cut(s)	597
PspN4I	GGNNCC	1 cut(s)	636
PspPI	GGNCC	1 cut(s)	635
PspXI	VCTCGAGB	1 cut(s)	510
RseI	CAYNNNNRTG	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	275
SatI	GCNGC	2 cut(s)	507, 693
Sau3AI	GATC	2 cut(s)	67, 163
Sau96I	GGNCC	1 cut(s)	635
SchI	GAGTC	3 cut(s)	83, 123, 644
SfcI	CTRYAG	1 cut(s)	727
Sfr274I	CTCGAG	1 cut(s)	510
SinI	GGWCC	1 cut(s)	635
SlaI	CTCGAG	1 cut(s)	510
SmiMI	CAYNNNNRTG	1 cut(s)	251
SmlI	CTYRAG	1 cut(s)	510
SmoI	CTYRAG	1 cut(s)	510
Sse9I	AATT	6 cut(s)	11, 90, 168, 272, 592, 629
SseBI	AGGCCT	2 cut(s)	516, 569
SspMI	CTAG	3 cut(s)	329, 518, 666
StuI	AGGCCT	2 cut(s)	516, 569
TaaI	ACNGT	2 cut(s)	374, 533
TaqI	TCGA	1 cut(s)	511
TasI	AATT	6 cut(s)	11, 90, 168, 272, 592, 629
TfiI	GAWTC	3 cut(s)	433, 451, 486
Tru1I	TTAA	1 cut(s)	275
Tru9I	TTAA	1 cut(s)	275
TscAI	CASTG	1 cut(s)	253
TseI	GCWGC	2 cut(s)	506, 692
TspDTI	ATGAA	2 cut(s)	149, 400
TspGWI	ACGGA	2 cut(s)	95, 401
TspRI	CASTG	1 cut(s)	253
Van91I	CCANNNNNTGG	1 cut(s)	644
VpaK11BI	GGWCC	1 cut(s)	635
XapI	RAATTY	2 cut(s)	90, 168
XceI	RCATGY	1 cut(s)	659
XhoI	CTCGAG	1 cut(s)	510
XmnI	GAANNNNTTC	1 cut(s)	337
XspI	CTAG	3 cut(s)	329, 518, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.