Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003491

Physical Location & Seq

Genomic Coordinates Forward (+)

8739699 .. 8743586

Gene Structure 3888 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g15410.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGAATGGCCGATCAACCTGGTCGAGAAGACAAGCAGTTGAACCTGCCTTGGGAACAGAGGTTCAAACGCAAGCAGGAAGAAGTCGACTTATGACAGCAGAAGCAGAAACAGAATCCAACTTGAAAGTTGTCCCTTATGCACATTTGAAAGATGCTACTAGGAATTTCAGCTCAGGCGTGGGTGGAAGTATGTTCAAGGGTTGGGTGAAGGAGGACAAGACGTTTGCACCTTCTCCTGTTGGCACTGGAATTGCCGTTGCTGTCAAGAGATTTACCCGTGCAAGTGAGGAAGACGACGAAAAGTGGGAGACCGAGTTGCTTTTAGAAAAGCCTCCTCATGAAAACCTTGTCAAGCTCTTGGGATACTGTGATGTGAAGAAGAAGAAGAAGAAGAAGAAGAAGTCATTCTTAGTTTATGAGTTTGTGCAGAATGGAAGCTTACCTAATCATCTTTTTAGAAAATTTTTAAGGGAGCCACTAACTTGGGACAACAGACTCGATATAGCTATTGGAGCTGCAAAGGGTTTAAGTTTCTTGCACAGTTTGCAAATCATTCACAGAGATGTCAAACCGACAACAATAATGCTCGATGGGAATTACAATACAAAAATTTCAAATTTTCACTTGGCAATAAAGAAGCCAGATGATGGACAGTTGTATATGTCAGCTCCGGTTTGCGGCACAGTGGGTTATATCGATCCCGAATATATGATAACAGGTCACTTATCTATAAAGAGCGATGTGTATAGCTTTGGTGTTGTGCTGCTTCAAATTCTGACAGGGTTAACGGCCTGCGATTATAGCCAACCTCAGGAACGACTTAGTCTGGTTGACTGGGCCATACCTCTTCTCTCTCATAAGACAAAGTTGCAAACTATAGCGGATGCAGATAAGCACCTTTATATTTCTCAGGAAGCAACGGAGACAGCAAAGCTTGCTCAAGAATGTCTAAACAGATGTCCTCAAGAGCGACCTTCCATGGAACAAGTTGTCAGGAAATTGGAACTCATTCGGACAAACCGAACCCCTAGGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

346

Amino Acids

38.93

Weight (kDa)

9.16

Isoelectric Point (pI)

38.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	25 - 304	2.7e-36	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	52 - 302	4.4e-32	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35600 AT4G35600
fragaria_vesca	FvH4_1g10470 FvH4_1g10470 FvH4_1g10470 FvH4_1g14300 FvH4_1g14300 FvH4_1g15410 FvH4_1g15410 FvH4_1g15410 FvH4_1g15410
malus_domestica	MD02G1117900.v1.1 MD15G1232600.v1.1
prunus_persica	Prupe.7G181500_v2.0.a1
pyrus_communis	pycom02g09150 pycom15g20700
rosa_chinensis	RchiOBHm_Chr2g0097331 RchiOBHm_Chr2g0102961
rosa_laevigata	RLG00000009020 RLG00000016718 RLG00000017194 RLG00000017335
rosa_multiflora	Rmu_sc0000388.1_g000037 Rmu_sc0001060.1_g000013 Rmu_sc0035636.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144760 Rroxscaffold_5G00347840
rosa_rugosa	Rorug02G0065900 Rorug02G0065900 Rorug02G0110700
rosa_samantha	Rh2CG117400 Rh2CG165600 Rh2DG116600
rosa_wichuraiana	Rw2G008810 Rw2G012430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	52
AccB7I	CCANNNNNTGG	1 cut(s)	647
AccI	GTMKAC	1 cut(s)	85
AciI	CCGC	2 cut(s)	678, 881
AclWI	GGATC	1 cut(s)	692
AcoI	YGGCCR	1 cut(s)	7
AcsI	RAATTY	5 cut(s)	163, 461, 609, 616, 771
AfiI	CCNNNNNNNGG	4 cut(s)	50, 647, 677, 811
AgsI	TTSAA	7 cut(s)	41, 65, 124, 148, 196, 615, 770
AjnI	CCWGG	1 cut(s)	17
AloI	GAACNNNNNNTCC	2 cut(s)	45, 77
AluBI	AGCT	8 cut(s)	171, 355, 438, 506, 515, 668, 750, 934
AluI	AGCT	8 cut(s)	171, 355, 438, 506, 515, 668, 750, 934
Alw26I	GTCTC	2 cut(s)	302, 917
AlwI	GGATC	1 cut(s)	692
AoxI	GGCC	3 cut(s)	7, 789, 837
ApeKI	GCWGC	2 cut(s)	515, 763
ApoI	RAATTY	5 cut(s)	163, 461, 609, 616, 771
ArsI	GACNNNNNNTTYG	2 cut(s)	206, 238
Asp700I	GAANNNNTTC	2 cut(s)	404, 1008
AspA2I	CCTAGG	1 cut(s)	1028
AspS9I	GGNCC	1 cut(s)	837
AsuHPI	GGTGA	1 cut(s)	217
AvrII	CCTAGG	1 cut(s)	1028
AxyI	CCTNAGG	1 cut(s)	810
BbsI	GAAGAC	2 cut(s)	34, 297
BbvI	GCAGC	2 cut(s)	502, 750
BccI	CCATC	2 cut(s)	584, 641
BceAI	ACGGC	2 cut(s)	239, 804
BciT130I	CCWGG	1 cut(s)	19
BciVI	GTATCC	1 cut(s)	356
BcoDI	GTCTC	2 cut(s)	302, 917
BfaI	CTAG	2 cut(s)	159, 1029
BfmI	CTRYAG	1 cut(s)	876
BfuAI	ACCTGC	1 cut(s)	52
BfuI	GTATCC	1 cut(s)	356
BisI	GCNGC	3 cut(s)	516, 679, 764
BlnI	CCTAGG	1 cut(s)	1028
BlsI	GCNGC	3 cut(s)	517, 680, 765
Bme1390I	CCNGG	1 cut(s)	19
BmgT120I	GGNCC	1 cut(s)	837
BmiI	GGNNCC	1 cut(s)	474
BmrFI	CCNGG	1 cut(s)	19
BmrI	ACTGGG	1 cut(s)	844
BmsI	GCATC	2 cut(s)	142, 874
BmuI	ACTGGG	1 cut(s)	844
BpiI	GAAGAC	2 cut(s)	34, 297
Bpu10I	CCTNAGC	1 cut(s)	172
BpuEI	CTTGAG	2 cut(s)	924, 948
Bsa29I	ATCGAT	1 cut(s)	696
BsaI	GGTCTC	1 cut(s)	302
BsaJI	CCNNGG	3 cut(s)	48, 978, 1028
BsaWI	WCCGGW	1 cut(s)	670
BsaXI	ACNNNNNCTCC	2 cut(s)	299, 329
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 647, 677, 811
Bse1I	ACTGG	2 cut(s)	250, 839
Bse21I	CCTNAGG	1 cut(s)	810
BseBI	CCWGG	1 cut(s)	19
BseCI	ATCGAT	1 cut(s)	696
BseDI	CCNNGG	3 cut(s)	48, 978, 1028
BseGI	GGATG	1 cut(s)	889
BseLI	CCNNNNNNNGG	4 cut(s)	50, 647, 677, 811
BseMII	CTCAG	3 cut(s)	186, 824, 923
BseNI	ACTGG	2 cut(s)	250, 839
BseRI	GAGGAG	1 cut(s)	324
BseXI	GCAGC	2 cut(s)	502, 750
BsgI	GTGCAG	1 cut(s)	446
BshFI	GGCC	3 cut(s)	9, 791, 839
BshVI	ATCGAT	1 cut(s)	696
BsiSI	CCGG	1 cut(s)	671
BslFI	GGGAC	2 cut(s)	116, 500
BslI	CCNNNNNNNGG	4 cut(s)	50, 647, 677, 811
BsmAI	GTCTC	2 cut(s)	302, 917
BsmFI	GGGAC	2 cut(s)	116, 500
BsnI	GGCC	3 cut(s)	9, 791, 839
Bso31I	GGTCTC	1 cut(s)	302
Bsp143I	GATC	2 cut(s)	11, 697
Bsp19I	CCATGG	1 cut(s)	978
BspACI	CCGC	2 cut(s)	678, 881
BspANI	GGCC	3 cut(s)	9, 791, 839
BspCNI	CTCAG	3 cut(s)	185, 823, 922
BspDI	ATCGAT	1 cut(s)	696
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	1 cut(s)	474
BspMI	ACCTGC	1 cut(s)	52
BspPI	GGATC	1 cut(s)	692
BspTNI	GGTCTC	1 cut(s)	302
BsrI	ACTGG	2 cut(s)	250, 839
BssECI	CCNNGG	3 cut(s)	48, 978, 1028
BssMI	GATC	2 cut(s)	11, 697
BssT1I	CCWWGG	3 cut(s)	48, 978, 1028
Bst2UI	CCWGG	1 cut(s)	19
Bst4CI	ACNGT	4 cut(s)	368, 542, 654, 685
Bst6I	CTCTTC	1 cut(s)	852
BstAPI	GCANNNNNTGC	2 cut(s)	544, 935
BstC8I	GCNNGC	3 cut(s)	72, 793, 936
BstDEI	CTNAG	5 cut(s)	172, 409, 810, 821, 909
BstDSI	CCRYGG	1 cut(s)	978
BstF5I	GGATG	1 cut(s)	889
BstKTI	GATC	2 cut(s)	14, 700
BstMAI	GTCTC	2 cut(s)	302, 917
BstMBI	GATC	2 cut(s)	11, 697
BstMWI	GCNNNNNNNGC	4 cut(s)	512, 544, 801, 935
BstNI	CCWGG	1 cut(s)	19
BstSCI	CCNGG	1 cut(s)	17
BstSFI	CTRYAG	1 cut(s)	876
BstV1I	GCAGC	2 cut(s)	502, 750
BstV2I	GAAGAC	2 cut(s)	34, 297
BstXI	CCANNNNNNTGG	1 cut(s)	483
Bsu15I	ATCGAT	1 cut(s)	696
Bsu36I	CCTNAGG	1 cut(s)	810
BsuI	GTATCC	1 cut(s)	356
BsuRI	GGCC	3 cut(s)	9, 791, 839
BsuTUI	ATCGAT	1 cut(s)	696
BtgI	CCRYGG	1 cut(s)	978
BtgZI	GCGATG	1 cut(s)	753
BtsCI	GGATG	1 cut(s)	889
BtsIMutI	CAGTG	2 cut(s)	243, 690
BveI	ACCTGC	1 cut(s)	52
Cac8I	GCNNGC	3 cut(s)	72, 793, 936
CciI	TCATGA	1 cut(s)	337
Cfr13I	GGNCC	1 cut(s)	837
ClaI	ATCGAT	1 cut(s)	696
CsiI	ACCWGGT	1 cut(s)	17
CviAII	CATG	2 cut(s)	338, 979
DdeI	CTNAG	5 cut(s)	172, 409, 810, 821, 909
DpnI	GATC	2 cut(s)	13, 699
DpnII	GATC	2 cut(s)	11, 697
EaeI	YGGCCR	1 cut(s)	7
Eam1104I	CTCTTC	1 cut(s)	852
EarI	CTCTTC	1 cut(s)	852
Eco130I	CCWWGG	3 cut(s)	48, 978, 1028
Eco31I	GGTCTC	1 cut(s)	302
Eco81I	CCTNAGG	1 cut(s)	810
EcoRII	CCWGG	1 cut(s)	17
EcoT14I	CCWWGG	3 cut(s)	48, 978, 1028
ErhI	CCWWGG	3 cut(s)	48, 978, 1028
FaeI	CATG	2 cut(s)	341, 982
FalI	AAGNNNNNCTT	2 cut(s)	392, 424
FaqI	GGGAC	2 cut(s)	116, 500
FatI	CATG	2 cut(s)	337, 978
FblI	GTMKAC	1 cut(s)	85
Fnu4HI	GCNGC	3 cut(s)	516, 679, 764
FokI	GGATG	1 cut(s)	896
Fsp4HI	GCNGC	3 cut(s)	516, 679, 764
FspBI	CTAG	2 cut(s)	159, 1029
GluI	GCNGC	3 cut(s)	516, 679, 764
HaeIII	GGCC	3 cut(s)	9, 791, 839
HapII	CCGG	1 cut(s)	671
Hin1II	CATG	2 cut(s)	341, 982
HincII	GTYRAC	3 cut(s)	86, 786, 832
HindII	GTYRAC	3 cut(s)	86, 786, 832
HindIII	AAGCTT	2 cut(s)	436, 932
HinfI	GANTC	2 cut(s)	113, 495
HpaI	GTTAAC	1 cut(s)	786
HpaII	CCGG	1 cut(s)	671
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	3 cut(s)	86, 786, 832
Hpy188I	TCNGA	2 cut(s)	777, 1014
Hpy188III	TCNNGA	9 cut(s)	24, 265, 338, 701, 812, 911, 941, 965, 994
Hpy8I	GTNNAC	3 cut(s)	86, 786, 832
Hpy99I	CGWCG	1 cut(s)	299
HpyAV	CCTTC	3 cut(s)	202, 240, 984
HpyCH4III	ACNGT	4 cut(s)	368, 542, 654, 685
HpyCH4IV	ACGT	1 cut(s)	221
HpyCH4V	TGCA	9 cut(s)	140, 227, 281, 427, 518, 538, 547, 871, 887
HpyF10VI	GCNNNNNNNGC	4 cut(s)	512, 544, 801, 935
HpyF3I	CTNAG	5 cut(s)	172, 409, 810, 821, 909
HpySE526I	ACGT	1 cut(s)	221
Hsp92II	CATG	2 cut(s)	341, 982
KspAI	GTTAAC	1 cut(s)	786
Kzo9I	GATC	2 cut(s)	11, 697
LmnI	GCTCC	3 cut(s)	472, 512, 673
Lsp1109I	GCAGC	2 cut(s)	502, 750
LweI	GCATC	2 cut(s)	142, 874
MabI	ACCWGGT	1 cut(s)	17
MaeI	CTAG	2 cut(s)	159, 1029
MaeII	ACGT	1 cut(s)	221
MaeIII	GTNAC	1 cut(s)	719
MalI	GATC	2 cut(s)	13, 699
MboI	GATC	2 cut(s)	11, 697
MluCI	AATT	8 cut(s)	163, 249, 461, 595, 609, 616, 771, 998
MlyI	GAGTC	1 cut(s)	489
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	8 cut(s)	52, 205, 280, 342, 345, 819, 855, 972
MroXI	GAANNNNTTC	2 cut(s)	404, 1008
MseI	TTAA	3 cut(s)	467, 527, 785
MslI	CAYNNNNRTG	1 cut(s)	561
MspI	CCGG	1 cut(s)	671
MspR9I	CCNGG	1 cut(s)	19
MvaI	CCWGG	1 cut(s)	19
MwoI	GCNNNNNNNGC	4 cut(s)	512, 544, 801, 935
NcoI	CCATGG	1 cut(s)	978
NdeII	GATC	2 cut(s)	11, 697
NlaIII	CATG	2 cut(s)	341, 982
NlaIV	GGNNCC	1 cut(s)	474
NmuCI	GTSAC	1 cut(s)	719
PagI	TCATGA	1 cut(s)	337
PcsI	WCGNNNNNNNCGW	1 cut(s)	1018
PdmI	GAANNNNTTC	2 cut(s)	404, 1008
PfeI	GAWTC	1 cut(s)	113
PflFI	GACNNNGTC	1 cut(s)	822
PflMI	CCANNNNNTGG	1 cut(s)	647
PkrI	GCNGC	3 cut(s)	517, 680, 765
PleI	GAGTC	1 cut(s)	489
PpsI	GAGTC	1 cut(s)	489
Psp6I	CCWGG	1 cut(s)	17
PspGI	CCWGG	1 cut(s)	17
PspN4I	GGNNCC	1 cut(s)	474
PspPI	GGNCC	1 cut(s)	837
PsyI	GACNNNGTC	1 cut(s)	822
RseI	CAYNNNNRTG	1 cut(s)	561
SalI	GTCGAC	1 cut(s)	84
SaqAI	TTAA	3 cut(s)	467, 527, 785
SatI	GCNGC	3 cut(s)	516, 679, 764
Sau3AI	GATC	2 cut(s)	11, 697
Sau96I	GGNCC	1 cut(s)	837
SchI	GAGTC	1 cut(s)	489
ScrFI	CCNGG	1 cut(s)	19
SexAI	ACCWGGT	1 cut(s)	17
SfaNI	GCATC	2 cut(s)	142, 874
SfcI	CTRYAG	1 cut(s)	876
SmiMI	CAYNNNNRTG	1 cut(s)	561
SmlI	CTYRAG	2 cut(s)	939, 963
SmoI	CTYRAG	2 cut(s)	939, 963
Sse9I	AATT	8 cut(s)	163, 249, 461, 595, 609, 616, 771, 998
SsiI	CCGC	2 cut(s)	678, 881
SspMI	CTAG	2 cut(s)	159, 1029
StyD4I	CCNGG	1 cut(s)	17
StyI	CCWWGG	3 cut(s)	48, 978, 1028
TaaI	ACNGT	4 cut(s)	368, 542, 654, 685
TaiI	ACGT	1 cut(s)	224
TaqI	TCGA	5 cut(s)	23, 85, 498, 588, 696
TaqII	GACCGA	1 cut(s)	326
TasI	AATT	8 cut(s)	163, 249, 461, 595, 609, 616, 771, 998
TauI	GCSGC	1 cut(s)	681
TfiI	GAWTC	1 cut(s)	113
Tru1I	TTAA	3 cut(s)	467, 527, 785
Tru9I	TTAA	3 cut(s)	467, 527, 785
TscAI	CASTG	2 cut(s)	250, 690
TseFI	GTSAC	1 cut(s)	719
TseI	GCWGC	2 cut(s)	515, 763
Tsp45I	GTSAC	1 cut(s)	719
TspDTI	ATGAA	2 cut(s)	17, 354
TspGWI	ACGGA	1 cut(s)	935
TspRI	CASTG	2 cut(s)	250, 690
Tth111I	GACNNNGTC	1 cut(s)	822
Van91I	CCANNNNNTGG	1 cut(s)	647
XapI	RAATTY	5 cut(s)	163, 461, 609, 616, 771
XmaJI	CCTAGG	1 cut(s)	1028
XmiI	GTMKAC	1 cut(s)	85
XmnI	GAANNNNTTC	2 cut(s)	404, 1008
XspI	CTAG	2 cut(s)	159, 1029

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.