Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003491

Physical Location & Seq

Genomic Coordinates Forward (+)

14808941 .. 14811711

Gene Structure 2771 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG165600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGATCATTGCTGTTAAGAAATGGAAGCCAGAAAGCTTCCAAGGCCTTGAAGAGTGGAAGGCAGAGGTGGACTTTCTAGGAACGCTTTCTCATCCCAACCTTGTTAAACTATTGGGAAACTGCTCAGCGGACAACGAGCTACTCCTTGTCTATGAATTCATGCAGAAAGGAAGCTTGGAGGTCCATCTTTTCAAAAGAACCCGAGACATTGAAGCAGTACTGTCTTGGGACAATAGACTCAAAATAGCTATCGGAGTAGCTCGAGCCTTGACTTTCTTACACAGTTTACCAAAACAAATCATACACAGAGATGTCAAATCCTCTAATATATTGCTTGATGAGAATTACAATGCAAAACTCTCCGGTTTTGGCTTGGCAATATTGGGGCCAACTGATGGAGAATCATATATAGAGACTAAAGTTATTGGCACATATGGTTATGCTGCTCCAGAATATGTTTCAACAGGTAATTTGTACGTGAAGAGCGATGTGTACAGCTTCGGTGTTGTGCTGCTCGAAATTCTGACAGGTCTAGGGGCCATTGATACAAACCGTTCTTTTCCGAAACAGAATTTAGTCGATTGGGCTAAACCACTTCTCTCTCATAAAAGAAATTTGAAAACCTTCATGGATGCCAAGATAAATGGCCAATATTCCTCCAAGGAAGCATTACAGACAGCAAAGGTTACCCTAAAATGCCTAGCATCAGATCCTAAAGGTCGTCCTTCGATGAAAGAAGTTGTGGATGCATTGGAGCAGATTCAGGCAATCAAGGAATACTCAAAACAAACAGAACTTACCCCAACTACAAAATCTACTCCAAGTTCTCAATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

278

Amino Acids

30.94

Weight (kDa)

8.62

Isoelectric Point (pI)

28.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	2 - 249	1.1e-37	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	3 - 251	8.4e-40	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35600 AT4G35600
fragaria_vesca	FvH4_1g10470 FvH4_1g10470 FvH4_1g10470 FvH4_1g14300 FvH4_1g14300 FvH4_1g15410 FvH4_1g15410 FvH4_1g15410 FvH4_1g15410
malus_domestica	MD02G1117900.v1.1 MD15G1232600.v1.1
prunus_persica	Prupe.7G181500_v2.0.a1
pyrus_communis	pycom02g09150 pycom15g20700
rosa_chinensis	RchiOBHm_Chr2g0097331 RchiOBHm_Chr2g0102961
rosa_laevigata	RLG00000009020 RLG00000016718 RLG00000017194 RLG00000017335
rosa_multiflora	Rmu_sc0000388.1_g000037 Rmu_sc0001060.1_g000013 Rmu_sc0035636.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144760 Rroxscaffold_5G00347840
rosa_rugosa	Rorug02G0065900 Rorug02G0065900 Rorug02G0110700
rosa_samantha	Rh2CG117400 Rh2CG165600 Rh2DG116600
rosa_wichuraiana	Rw2G008810 Rw2G012430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	395
AciI	CCGC	1 cut(s)	128
AclWI	GGATC	1 cut(s)	704
AcoI	YGGCCR	1 cut(s)	646
AcsI	RAATTY	4 cut(s)	155, 519, 571, 613
AfaI	GTAC	3 cut(s)	219, 476, 494
AfiI	CCNNNNNNNGG	1 cut(s)	395
AgsI	TTSAA	5 cut(s)	50, 193, 212, 462, 619
AjuI	GAANNNNNNNTTGG	2 cut(s)	158, 190
AluBI	AGCT	6 cut(s)	36, 139, 174, 248, 260, 498
AluI	AGCT	6 cut(s)	36, 139, 174, 248, 260, 498
Alw26I	GTCTC	2 cut(s)	198, 407
AlwI	GGATC	1 cut(s)	704
Ama87I	CYCGRG	2 cut(s)	201, 261
AoxI	GGCC	4 cut(s)	43, 386, 537, 646
ApeKI	GCWGC	2 cut(s)	443, 511
ApoI	RAATTY	4 cut(s)	155, 519, 571, 613
Asp700I	GAANNNNTTC	2 cut(s)	85, 623
AspS9I	GGNCC	3 cut(s)	181, 386, 537
AvaI	CYCGRG	2 cut(s)	201, 261
AvaII	GGWCC	1 cut(s)	181
BalI	TGGCCA	1 cut(s)	648
BbvI	GCAGC	2 cut(s)	430, 498
BccI	CCATC	2 cut(s)	192, 389
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	2 cut(s)	198, 407
BfaI	CTAG	3 cut(s)	77, 533, 701
BisI	GCNGC	2 cut(s)	444, 512
BlpI	GCTNAGC	1 cut(s)	124
BlsI	GCNGC	2 cut(s)	445, 513
BmcAI	AGTACT	1 cut(s)	219
Bme18I	GGWCC	1 cut(s)	181
BmeT110I	CYCGRG	2 cut(s)	201, 261
BmgT120I	GGNCC	3 cut(s)	181, 386, 537
BmiI	GGNNCC	2 cut(s)	387, 538
BmsI	GCATC	3 cut(s)	622, 713, 736
BpmI	CTGGAG	1 cut(s)	432
Bpu1102I	GCTNAGC	1 cut(s)	124
BsaAI	YACGTR	1 cut(s)	478
BsaJI	CCNNGG	2 cut(s)	40, 660
BsaWI	WCCGGW	1 cut(s)	362
Bsc4I	CCNNNNNNNGG	1 cut(s)	395
Bse3DI	GCAATG	1 cut(s)	6
BseDI	CCNNGG	2 cut(s)	40, 660
BseGI	GGATG	3 cut(s)	91, 637, 751
BseLI	CCNNNNNNNGG	1 cut(s)	395
BseMI	GCAATG	1 cut(s)	6
BseMII	CTCAG	1 cut(s)	138
BseXI	GCAGC	2 cut(s)	430, 498
BshFI	GGCC	4 cut(s)	45, 388, 539, 648
BsiHKCI	CYCGRG	2 cut(s)	201, 261
BsiSI	CCGG	1 cut(s)	363
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	1 cut(s)	395
BsmAI	GTCTC	2 cut(s)	198, 407
BsmFI	GGGAC	1 cut(s)	242
BsnI	GGCC	4 cut(s)	45, 388, 539, 648
BsoBI	CYCGRG	2 cut(s)	201, 261
Bsp1407I	TGTACA	1 cut(s)	492
Bsp143I	GATC	2 cut(s)	3, 709
Bsp1720I	GCTNAGC	1 cut(s)	124
BspACI	CCGC	1 cut(s)	128
BspANI	GGCC	4 cut(s)	45, 388, 539, 648
BspCNI	CTCAG	1 cut(s)	137
BspLI	GGNNCC	2 cut(s)	387, 538
BspPI	GGATC	1 cut(s)	704
BspQI	GCTCTTC	1 cut(s)	476
BsrDI	GCAATG	1 cut(s)	6
BsrGI	TGTACA	1 cut(s)	492
BssECI	CCNNGG	2 cut(s)	40, 660
BssMI	GATC	2 cut(s)	3, 709
BssT1I	CCWWGG	2 cut(s)	40, 660
Bst4CI	ACNGT	3 cut(s)	222, 284, 554
Bst6I	CTCTTC	2 cut(s)	45, 476
BstAUI	TGTACA	1 cut(s)	492
BstBAI	YACGTR	1 cut(s)	478
BstDEI	CTNAG	1 cut(s)	124
BstEII	GGTNACC	1 cut(s)	685
BstF5I	GGATG	3 cut(s)	91, 637, 751
BstKTI	GATC	2 cut(s)	6, 712
BstMAI	GTCTC	2 cut(s)	198, 407
BstMBI	GATC	2 cut(s)	3, 709
BstMWI	GCNNNNNNNGC	1 cut(s)	42
BstPI	GGTNACC	1 cut(s)	685
BstV1I	GCAGC	2 cut(s)	430, 498
BstX2I	RGATCY	1 cut(s)	709
BstYI	RGATCY	1 cut(s)	709
BsuRI	GGCC	4 cut(s)	45, 388, 539, 648
BtgZI	GCGATG	1 cut(s)	501
BtsCI	GGATG	3 cut(s)	91, 637, 751
Cfr13I	GGNCC	3 cut(s)	181, 386, 537
Csp6I	GTAC	3 cut(s)	218, 475, 493
CviAII	CATG	2 cut(s)	160, 628
CviQI	GTAC	3 cut(s)	218, 475, 493
DdeI	CTNAG	1 cut(s)	124
DpnI	GATC	2 cut(s)	5, 711
DpnII	GATC	2 cut(s)	3, 709
EaeI	YGGCCR	1 cut(s)	646
Eam1104I	CTCTTC	2 cut(s)	45, 476
EarI	CTCTTC	2 cut(s)	45, 476
Eco130I	CCWWGG	2 cut(s)	40, 660
Eco147I	AGGCCT	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	181
Eco88I	CYCGRG	2 cut(s)	201, 261
Eco91I	GGTNACC	1 cut(s)	685
EcoO65I	GGTNACC	1 cut(s)	685
EcoRI	GAATTC	1 cut(s)	155
EcoT14I	CCWWGG	2 cut(s)	40, 660
EcoT22I	ATGCAT	1 cut(s)	751
ErhI	CCWWGG	2 cut(s)	40, 660
FaeI	CATG	2 cut(s)	163, 631
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	2 cut(s)	159, 627
FauNDI	CATATG	1 cut(s)	433
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	2 cut(s)	444, 512
FokI	GGATG	3 cut(s)	78, 644, 758
Fsp4HI	GCNGC	2 cut(s)	444, 512
FspBI	CTAG	3 cut(s)	77, 533, 701
GluI	GCNGC	2 cut(s)	444, 512
GsuI	CTGGAG	1 cut(s)	432
HaeIII	GGCC	4 cut(s)	45, 388, 539, 648
HapII	CCGG	1 cut(s)	363
Hin1II	CATG	2 cut(s)	163, 631
HindIII	AAGCTT	2 cut(s)	34, 172
HinfI	GANTC	3 cut(s)	237, 401, 760
HpaII	CCGG	1 cut(s)	363
Hpy166II	GTNNAC	3 cut(s)	70, 287, 493
Hpy188I	TCNGA	4 cut(s)	254, 525, 564, 709
Hpy188III	TCNNGA	2 cut(s)	449, 834
Hpy8I	GTNNAC	3 cut(s)	70, 287, 493
HpyAV	CCTTC	3 cut(s)	52, 634, 735
HpyCH4III	ACNGT	3 cut(s)	222, 284, 554
HpyCH4IV	ACGT	1 cut(s)	477
HpyCH4V	TGCA	3 cut(s)	163, 353, 749
HpyF10VI	GCNNNNNNNGC	1 cut(s)	42
HpyF3I	CTNAG	1 cut(s)	124
HpySE526I	ACGT	1 cut(s)	477
Hsp92II	CATG	2 cut(s)	163, 631
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 709
LguI	GCTCTTC	1 cut(s)	476
LmnI	GCTCC	2 cut(s)	451, 754
LpnPI	CCDG	6 cut(s)	42, 376, 450, 462, 513, 749
Lsp1109I	GCAGC	2 cut(s)	430, 498
LweI	GCATC	3 cut(s)	622, 713, 736
MaeI	CTAG	3 cut(s)	77, 533, 701
MaeII	ACGT	1 cut(s)	477
MaeIII	GTNAC	1 cut(s)	685
MalI	GATC	2 cut(s)	5, 711
MboI	GATC	2 cut(s)	3, 709
MboII	GAAGA	2 cut(s)	62, 493
MflI	RGATCY	1 cut(s)	709
MlsI	TGGCCA	1 cut(s)	648
MluCI	AATT	6 cut(s)	155, 343, 469, 519, 571, 613
MluNI	TGGCCA	1 cut(s)	648
MlyI	GAGTC	1 cut(s)	231
MnlI	CCTC	4 cut(s)	58, 172, 331, 667
Mox20I	TGGCCA	1 cut(s)	648
Mph1103I	ATGCAT	1 cut(s)	751
MroXI	GAANNNNTTC	2 cut(s)	85, 623
MscI	TGGCCA	1 cut(s)	648
MseI	TTAA	2 cut(s)	15, 105
MslI	CAYNNNNRTG	1 cut(s)	309
Msp20I	TGGCCA	1 cut(s)	648
MspA1I	CMGCKG	1 cut(s)	128
MspI	CCGG	1 cut(s)	363
MwoI	GCNNNNNNNGC	1 cut(s)	42
NdeI	CATATG	1 cut(s)	433
NdeII	GATC	2 cut(s)	3, 709
NlaIII	CATG	2 cut(s)	163, 631
NlaIV	GGNNCC	2 cut(s)	387, 538
NsiI	ATGCAT	1 cut(s)	751
PaeR7I	CTCGAG	1 cut(s)	261
PceI	AGGCCT	1 cut(s)	45
PciSI	GCTCTTC	1 cut(s)	476
PcsI	WCGNNNNNNNCGW	1 cut(s)	483
PdmI	GAANNNNTTC	2 cut(s)	85, 623
PfeI	GAWTC	2 cut(s)	401, 760
PflMI	CCANNNNNTGG	1 cut(s)	395
PkrI	GCNGC	2 cut(s)	445, 513
PleI	GAGTC	1 cut(s)	231
PpsI	GAGTC	1 cut(s)	231
Ppu21I	YACGTR	1 cut(s)	478
PspEI	GGTNACC	1 cut(s)	685
PspN4I	GGNNCC	2 cut(s)	387, 538
PspPI	GGNCC	3 cut(s)	181, 386, 537
PspXI	VCTCGAGB	1 cut(s)	261
PsuI	RGATCY	1 cut(s)	709
RsaI	GTAC	3 cut(s)	219, 476, 494
RsaNI	GTAC	3 cut(s)	218, 475, 493
RseI	CAYNNNNRTG	1 cut(s)	309
SapI	GCTCTTC	1 cut(s)	476
SaqAI	TTAA	2 cut(s)	15, 105
SatI	GCNGC	2 cut(s)	444, 512
Sau3AI	GATC	2 cut(s)	3, 709
Sau96I	GGNCC	3 cut(s)	181, 386, 537
ScaI	AGTACT	1 cut(s)	219
SchI	GAGTC	1 cut(s)	231
SfaNI	GCATC	3 cut(s)	622, 713, 736
Sfr274I	CTCGAG	1 cut(s)	261
SinI	GGWCC	1 cut(s)	181
SlaI	CTCGAG	1 cut(s)	261
SmiMI	CAYNNNNRTG	1 cut(s)	309
SmlI	CTYRAG	1 cut(s)	261
SmoI	CTYRAG	1 cut(s)	261
Sse9I	AATT	6 cut(s)	155, 343, 469, 519, 571, 613
SseBI	AGGCCT	1 cut(s)	45
SsiI	CCGC	1 cut(s)	128
SspI	AATATT	2 cut(s)	381, 653
SspMI	CTAG	3 cut(s)	77, 533, 701
StuI	AGGCCT	1 cut(s)	45
StyI	CCWWGG	2 cut(s)	40, 660
TaaI	ACNGT	3 cut(s)	222, 284, 554
TaiI	ACGT	1 cut(s)	480
TaqI	TCGA	4 cut(s)	262, 516, 579, 728
TasI	AATT	6 cut(s)	155, 343, 469, 519, 571, 613
TatI	WGTACW	2 cut(s)	217, 492
TfiI	GAWTC	2 cut(s)	401, 760
Tru1I	TTAA	2 cut(s)	15, 105
Tru9I	TTAA	2 cut(s)	15, 105
TseI	GCWGC	2 cut(s)	443, 511
TspDTI	ATGAA	4 cut(s)	148, 168, 616, 746
Van91I	CCANNNNNTGG	1 cut(s)	395
VpaK11BI	GGWCC	1 cut(s)	181
XapI	RAATTY	4 cut(s)	155, 519, 571, 613
XhoI	CTCGAG	1 cut(s)	261
XmnI	GAANNNNTTC	2 cut(s)	85, 623
XspI	CTAG	3 cut(s)	77, 533, 701
ZrmI	AGTACT	1 cut(s)	219
Zsp2I	ATGCAT	1 cut(s)	751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.