Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003491

Physical Location & Seq

Genomic Coordinates Forward (+)

19010086 .. 19013351

Gene Structure 3266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1232600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGGGAATTGCTGGACATCTCCTGATGATCCTCATCGCAACAAATACATACCTTCAACTCCAGGGACATCTGGAAATCACAGCAATAACATATCCTCAAACACAAGCAGCAGTGGAGGAAGAAGTCAATTTTCAGAAGCATCATCGAGCCCCAGAATTAAAGAGTTACATTCACAACAACCCAATGGGCAGATTTTGGAGTCACCAAACTTGAGAGTCTTCACTTTTACAGAGTTGAAGGCAGCCACCAGAAATTTCAAGTCAGATCAAGTGCTTGGTGAGGGAGGATTTGGGAGGGTTTTCAAAGGTTGGGTGGATGAGAAAACCCTTCAGCCTTCAAAATCTGGTACTGGAATGCTGGTTGCTATCAAGAAATTGAACTCAGAAAGTGTCCAAGGGTATCAAGAGTGGCAGTCAGAAGTGAATTTTTTGGGACGGCTTTCTCATCCGAACCTCGTGAAGCTATTAGGTTACTGTTTGGAAGACGAAGAACTACTCCTTGTTTATGAGTTTATGAAGAAAGGAAGTTTGGAGAATCATCTTTTCAGAAGGAGCGCGGGCAGCGAACTTCTTTCTTGGGACACACGACTAAAAATAGCTATTGGAGCAGCTCGGGGCCTGGCCTTCTTACACAGTTCAGAAAAACAAATCATCTACAGAGATTTTAAGGCCTCAAATATATTGCTTGATTGGAGTTTCAATTCAAAAATCTCGGATTTTGGCTTGGCGAAATTGGGGCCAGCAGGTGCAGAATCACATGTTACGACTAGGATCATGGGAACATATGGTTATGCTGCTCCAGAATACATTGCAACAGCAACAGGTCATTTGTACGTGAAGAGCGATGTGTATGGATTCGGCGTGGTGTTGCTTGAAATTCTGACAGGGCTACGAGCACTTGATATGCAACGTCCCAGAGAACAACAACAACTTGCAGAATGGGCTAAACCACTTCTCTTACACAAAAGAAAGCTTAAAAACATATTGGATGTGCGGATGGAAGGCCAATATGCCTTCAAGGCAGCAATGCAGGTAGCACTTATAGCTCACAAGTGCCTAGAGCCGGACCCTAAAAGCCGGCCCTCCATGAAAGAAGTTGTGGAGCAATTGGAACAGATTCAAGCAATCAAGGAACAACCAAAGCAATCCAAACTTACATCTGTGCAAGCCACTTTTAATTTTGGAGCCAATAAACAGTCGCTTCCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

404

Amino Acids

44.92

Weight (kDa)

9.24

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	87 - 368	6.7e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	88 - 370	1.6e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35600 AT4G35600
fragaria_vesca	FvH4_1g10470 FvH4_1g10470 FvH4_1g10470 FvH4_1g14300 FvH4_1g14300 FvH4_1g15410 FvH4_1g15410 FvH4_1g15410 FvH4_1g15410
malus_domestica	MD02G1117900.v1.1 MD15G1232600.v1.1
prunus_persica	Prupe.7G181500_v2.0.a1
pyrus_communis	pycom02g09150 pycom15g20700
rosa_chinensis	RchiOBHm_Chr2g0097331 RchiOBHm_Chr2g0102961
rosa_laevigata	RLG00000009020 RLG00000016718 RLG00000017194 RLG00000017335
rosa_multiflora	Rmu_sc0000388.1_g000037 Rmu_sc0001060.1_g000013 Rmu_sc0035636.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144760 Rroxscaffold_5G00347840
rosa_rugosa	Rorug02G0065900 Rorug02G0065900 Rorug02G0110700
rosa_samantha	Rh2CG117400 Rh2CG165600 Rh2DG116600
rosa_wichuraiana	Rw2G008810 Rw2G012430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	734
Acc36I	ACCTGC	2 cut(s)	734, 1021
AccII	CGCG	1 cut(s)	557
AciI	CCGC	2 cut(s)	557, 994
AclWI	GGATC	2 cut(s)	23, 779
AcsI	RAATTY	3 cut(s)	253, 424, 876
AcuI	CTGAAG	1 cut(s)	314
AfaI	GTAC	2 cut(s)	349, 833
AfiI	CCNNNNNNNGG	1 cut(s)	1063
AflIII	ACRYGT	1 cut(s)	757
AjnI	CCWGG	2 cut(s)	61, 618
AjuI	GAANNNNNNNTTGG	2 cut(s)	512, 544
AluBI	AGCT	5 cut(s)	463, 599, 611, 973, 1046
AluI	AGCT	5 cut(s)	463, 599, 611, 973, 1046
Alw21I	GWGCWC	1 cut(s)	898
AlwI	GGATC	2 cut(s)	23, 779
Ama87I	CYCGRG	1 cut(s)	612
AoxI	GGCC	6 cut(s)	616, 621, 669, 737, 1003, 1079
ApeKI	GCWGC	6 cut(s)	108, 242, 561, 608, 794, 1022
ApoI	RAATTY	3 cut(s)	253, 424, 876
Asp700I	GAANNNNTTC	1 cut(s)	1116
AspLEI	GCGC	1 cut(s)	557
AspS9I	GGNCC	4 cut(s)	616, 737, 1066, 1080
AsuHPI	GGTGA	2 cut(s)	195, 290
AvaI	CYCGRG	1 cut(s)	612
AvaII	GGWCC	1 cut(s)	1066
BanII	GRGCYC	1 cut(s)	152
BauI	CACGAG	1 cut(s)	455
BbsI	GAAGAC	2 cut(s)	211, 489
Bbv12I	GWGCWC	1 cut(s)	898
BbvI	GCAGC	6 cut(s)	120, 254, 573, 620, 781, 1034
BccI	CCATC	1 cut(s)	991
BceAI	ACGGC	1 cut(s)	452
BciT130I	CCWGG	2 cut(s)	63, 620
BfaI	CTAG	2 cut(s)	768, 1058
BfmI	CTRYAG	1 cut(s)	655
BfuAI	ACCTGC	2 cut(s)	734, 1021
BglI	GCCNNNNNGGC	1 cut(s)	1019
BisI	GCNGC	6 cut(s)	109, 243, 562, 609, 795, 1023
BlsI	GCNGC	6 cut(s)	110, 244, 563, 610, 796, 1024
Bme1390I	CCNGG	2 cut(s)	63, 620
Bme18I	GGWCC	1 cut(s)	1066
BmeT110I	CYCGRG	1 cut(s)	612
BmgT120I	GGNCC	4 cut(s)	616, 737, 1066, 1080
BmiI	GGNNCC	4 cut(s)	617, 738, 1068, 1186
BmrFI	CCNGG	2 cut(s)	63, 620
BmsI	GCATC	1 cut(s)	149
BpiI	GAAGAC	2 cut(s)	211, 489
BpmI	CTGGAG	2 cut(s)	45, 783
BpuEI	CTTGAG	1 cut(s)	232
BsaAI	YACGTR	1 cut(s)	835
BsaBI	GATNNNNATC	1 cut(s)	33
BsaJI	CCNNGG	2 cut(s)	62, 394
Bsc4I	CCNNNNNNNGG	1 cut(s)	1063
Bse118I	RCCGGY	1 cut(s)	1077
Bse1I	ACTGG	1 cut(s)	355
Bse3DI	GCAATG	2 cut(s)	807, 1032
Bse8I	GATNNNNATC	1 cut(s)	33
BseBI	CCWGG	2 cut(s)	63, 620
BseDI	CCNNGG	2 cut(s)	62, 394
BseGI	GGATG	4 cut(s)	322, 445, 994, 1002
BseJI	GATNNNNATC	1 cut(s)	33
BseLI	CCNNNNNNNGG	1 cut(s)	1063
BseMI	GCAATG	2 cut(s)	807, 1032
BseMII	CTCAG	1 cut(s)	396
BseNI	ACTGG	1 cut(s)	355
BseXI	GCAGC	6 cut(s)	120, 254, 573, 620, 781, 1034
BsgI	GTGCAG	1 cut(s)	768
Bsh1236I	CGCG	1 cut(s)	557
BshFI	GGCC	6 cut(s)	618, 623, 671, 739, 1005, 1081
BsiHKAI	GWGCWC	1 cut(s)	898
BsiHKCI	CYCGRG	1 cut(s)	612
BsiSI	CCGG	2 cut(s)	1064, 1078
BslFI	GGGAC	4 cut(s)	79, 447, 593, 897
BslI	CCNNNNNNNGG	1 cut(s)	1063
BsmFI	GGGAC	4 cut(s)	79, 447, 593, 897
BsmI	GAATGC	1 cut(s)	360
BsnI	GGCC	6 cut(s)	618, 623, 671, 739, 1005, 1081
BsoBI	CYCGRG	1 cut(s)	612
Bsp1286I	GDGCHC	2 cut(s)	152, 898
Bsp143I	GATC	3 cut(s)	28, 265, 771
BspACI	CCGC	2 cut(s)	557, 994
BspANI	GGCC	6 cut(s)	618, 623, 671, 739, 1005, 1081
BspCNI	CTCAG	1 cut(s)	395
BspFNI	CGCG	1 cut(s)	557
BspLI	GGNNCC	4 cut(s)	617, 738, 1068, 1186
BspMI	ACCTGC	2 cut(s)	734, 1021
BspPI	GGATC	2 cut(s)	23, 779
BspQI	GCTCTTC	1 cut(s)	833
BsrDI	GCAATG	2 cut(s)	807, 1032
BsrFI	RCCGGY	1 cut(s)	1077
BsrI	ACTGG	1 cut(s)	355
BssAI	RCCGGY	1 cut(s)	1077
BssECI	CCNNGG	2 cut(s)	62, 394
BssMI	GATC	3 cut(s)	28, 265, 771
BssSI	CACGAG	1 cut(s)	455
BssT1I	CCWWGG	1 cut(s)	394
Bst2BI	CACGAG	1 cut(s)	455
Bst2UI	CCWGG	2 cut(s)	63, 620
Bst4CI	ACNGT	3 cut(s)	476, 635, 1197
Bst6I	CTCTTC	1 cut(s)	833
BstBAI	YACGTR	1 cut(s)	835
BstC8I	GCNNGC	4 cut(s)	559, 741, 1079, 1167
BstDEI	CTNAG	1 cut(s)	382
BstF5I	GGATG	4 cut(s)	322, 445, 994, 1002
BstFNI	CGCG	1 cut(s)	557
BstHHI	GCGC	1 cut(s)	557
BstKTI	GATC	3 cut(s)	31, 268, 774
BstMBI	GATC	3 cut(s)	28, 265, 771
BstMWI	GCNNNNNNNGC	5 cut(s)	561, 605, 941, 1019, 1043
BstNI	CCWGG	2 cut(s)	63, 620
BstNSI	RCATGY	1 cut(s)	761
BstSCI	CCNGG	2 cut(s)	61, 618
BstSFI	CTRYAG	1 cut(s)	655
BstUI	CGCG	1 cut(s)	557
BstV1I	GCAGC	6 cut(s)	120, 254, 573, 620, 781, 1034
BstV2I	GAAGAC	2 cut(s)	211, 489
BsuRI	GGCC	6 cut(s)	618, 623, 671, 739, 1005, 1081
BtgZI	GCGATG	2 cut(s)	20, 858
BtsCI	GGATG	4 cut(s)	322, 445, 994, 1002
BtsI	GCAGTG	1 cut(s)	118
BtsIMutI	CAGTG	1 cut(s)	118
BveI	ACCTGC	2 cut(s)	734, 1021
Cac8I	GCNNGC	4 cut(s)	559, 741, 1079, 1167
CfoI	GCGC	1 cut(s)	557
Cfr10I	RCCGGY	1 cut(s)	1077
Cfr13I	GGNCC	4 cut(s)	616, 737, 1066, 1080
Csp6I	GTAC	2 cut(s)	348, 832
CviAII	CATG	3 cut(s)	758, 775, 1087
CviQI	GTAC	2 cut(s)	348, 832
DdeI	CTNAG	1 cut(s)	382
DpnI	GATC	3 cut(s)	30, 267, 773
DpnII	GATC	3 cut(s)	28, 265, 771
Eam1104I	CTCTTC	1 cut(s)	833
EarI	CTCTTC	1 cut(s)	833
Eco130I	CCWWGG	1 cut(s)	394
Eco147I	AGGCCT	1 cut(s)	671
Eco24I	GRGCYC	1 cut(s)	152
Eco47I	GGWCC	1 cut(s)	1066
Eco57I	CTGAAG	1 cut(s)	314
Eco88I	CYCGRG	1 cut(s)	612
EcoO109I	RGGNCCY	1 cut(s)	616
EcoRII	CCWGG	2 cut(s)	61, 618
EcoT14I	CCWWGG	1 cut(s)	394
EcoT38I	GRGCYC	1 cut(s)	152
ErhI	CCWWGG	1 cut(s)	394
FaeI	CATG	3 cut(s)	761, 778, 1090
FaqI	GGGAC	4 cut(s)	79, 447, 593, 897
FatI	CATG	3 cut(s)	757, 774, 1086
FauI	CCCGC	1 cut(s)	550
FauNDI	CATATG	1 cut(s)	784
Fnu4HI	GCNGC	6 cut(s)	109, 243, 562, 609, 795, 1023
FokI	GGATG	4 cut(s)	329, 432, 1001, 1009
FriOI	GRGCYC	1 cut(s)	152
Fsp4HI	GCNGC	6 cut(s)	109, 243, 562, 609, 795, 1023
FspBI	CTAG	2 cut(s)	768, 1058
GlaI	GCGC	1 cut(s)	556
GluI	GCNGC	6 cut(s)	109, 243, 562, 609, 795, 1023
GsuI	CTGGAG	2 cut(s)	45, 783
HaeIII	GGCC	6 cut(s)	618, 623, 671, 739, 1005, 1081
HapII	CCGG	2 cut(s)	1064, 1078
HhaI	GCGC	1 cut(s)	557
Hin1II	CATG	3 cut(s)	761, 778, 1090
Hin6I	GCGC	1 cut(s)	555
HinP1I	GCGC	1 cut(s)	555
HindIII	AAGCTT	1 cut(s)	971
HinfI	GANTC	6 cut(s)	200, 216, 535, 752, 855, 1117
HpaII	CCGG	2 cut(s)	1064, 1078
HphI	GGTGA	2 cut(s)	195, 290
Hpy188I	TCNGA	9 cut(s)	136, 265, 385, 418, 450, 548, 640, 715, 882
Hpy188III	TCNNGA	6 cut(s)	23, 72, 370, 404, 457, 800
HpyAV	CCTTC	8 cut(s)	63, 232, 338, 345, 543, 634, 995, 1024
HpyCH4III	ACNGT	3 cut(s)	476, 635, 1197
HpyCH4IV	ACGT	2 cut(s)	834, 910
HpyCH4V	TGCA	6 cut(s)	749, 812, 907, 935, 1030, 1165
HpyF10VI	GCNNNNNNNGC	5 cut(s)	561, 605, 941, 1019, 1043
HpyF3I	CTNAG	1 cut(s)	382
HpySE526I	ACGT	2 cut(s)	834, 910
Hsp92II	CATG	3 cut(s)	761, 778, 1090
HspAI	GCGC	1 cut(s)	555
KroI	GCCGGC	1 cut(s)	1077
KroNI	GCCGGC	1 cut(s)	1079
Kzo9I	GATC	3 cut(s)	28, 265, 771
LguI	GCTCTTC	1 cut(s)	833
LmnI	GCTCC	5 cut(s)	552, 605, 802, 1102, 1184
Lsp1109I	GCAGC	6 cut(s)	120, 254, 573, 620, 781, 1034
LweI	GCATC	1 cut(s)	149
MaeI	CTAG	2 cut(s)	768, 1058
MaeII	ACGT	2 cut(s)	834, 910
MaeIII	GTNAC	4 cut(s)	165, 201, 470, 760
MalI	GATC	3 cut(s)	30, 267, 773
MboI	GATC	3 cut(s)	28, 265, 771
MboII	GAAGA	6 cut(s)	132, 211, 494, 500, 529, 850
MfeI	CAATTG	1 cut(s)	1106
MhlI	GDGCHC	2 cut(s)	152, 898
MlyI	GAGTC	2 cut(s)	209, 225
MnlI	CCTC	9 cut(s)	42, 106, 110, 274, 278, 288, 464, 682, 1093
MroNI	GCCGGC	1 cut(s)	1077
MroXI	GAANNNNTTC	1 cut(s)	1116
MseI	TTAA	4 cut(s)	159, 666, 975, 1176
MspI	CCGG	2 cut(s)	1064, 1078
MspR9I	CCNGG	2 cut(s)	63, 620
MunI	CAATTG	1 cut(s)	1106
Mva1269I	GAATGC	1 cut(s)	360
MvaI	CCWGG	2 cut(s)	63, 620
MvnI	CGCG	1 cut(s)	557
MwoI	GCNNNNNNNGC	5 cut(s)	561, 605, 941, 1019, 1043
NaeI	GCCGGC	1 cut(s)	1079
NdeI	CATATG	1 cut(s)	784
NdeII	GATC	3 cut(s)	28, 265, 771
NgoMIV	GCCGGC	1 cut(s)	1077
NlaIII	CATG	3 cut(s)	761, 778, 1090
NlaIV	GGNNCC	4 cut(s)	617, 738, 1068, 1186
NmuCI	GTSAC	1 cut(s)	201
NspI	RCATGY	1 cut(s)	761
PaqCI	CACCTGC	1 cut(s)	734
PceI	AGGCCT	1 cut(s)	671
PciI	ACATGT	1 cut(s)	757
PciSI	GCTCTTC	1 cut(s)	833
PcsI	WCGNNNNNNNCGW	1 cut(s)	840
PctI	GAATGC	1 cut(s)	360
PdiI	GCCGGC	1 cut(s)	1079
PdmI	GAANNNNTTC	1 cut(s)	1116
PfeI	GAWTC	4 cut(s)	535, 752, 855, 1117
PkrI	GCNGC	6 cut(s)	110, 244, 563, 610, 796, 1024
PleI	GAGTC	2 cut(s)	208, 224
PpsI	GAGTC	2 cut(s)	208, 224
Ppu21I	YACGTR	1 cut(s)	835
PscI	ACATGT	1 cut(s)	757
Psp6I	CCWGG	2 cut(s)	61, 618
PspGI	CCWGG	2 cut(s)	61, 618
PspN4I	GGNNCC	4 cut(s)	617, 738, 1068, 1186
PspPI	GGNCC	4 cut(s)	616, 737, 1066, 1080
RsaI	GTAC	2 cut(s)	349, 833
RsaNI	GTAC	2 cut(s)	348, 832
SapI	GCTCTTC	1 cut(s)	833
SaqAI	TTAA	4 cut(s)	159, 666, 975, 1176
SatI	GCNGC	6 cut(s)	109, 243, 562, 609, 795, 1023
Sau3AI	GATC	3 cut(s)	28, 265, 771
Sau96I	GGNCC	4 cut(s)	616, 737, 1066, 1080
SchI	GAGTC	2 cut(s)	209, 225
ScrFI	CCNGG	2 cut(s)	63, 620
SduI	GDGCHC	2 cut(s)	152, 898
SfaNI	GCATC	1 cut(s)	149
SfcI	CTRYAG	1 cut(s)	655
SinI	GGWCC	1 cut(s)	1066
SmlI	CTYRAG	1 cut(s)	211
SmoI	CTYRAG	1 cut(s)	211
SseBI	AGGCCT	1 cut(s)	671
SsiI	CCGC	2 cut(s)	557, 994
SspMI	CTAG	2 cut(s)	768, 1058
StuI	AGGCCT	1 cut(s)	671
StyD4I	CCNGG	2 cut(s)	61, 618
StyI	CCWWGG	1 cut(s)	394
TaaI	ACNGT	3 cut(s)	476, 635, 1197
TaiI	ACGT	2 cut(s)	837, 913
TaqI	TCGA	1 cut(s)	146
TfiI	GAWTC	4 cut(s)	535, 752, 855, 1117
Tru1I	TTAA	4 cut(s)	159, 666, 975, 1176
Tru9I	TTAA	4 cut(s)	159, 666, 975, 1176
TscAI	CASTG	1 cut(s)	118
TseFI	GTSAC	1 cut(s)	201
TseI	GCWGC	6 cut(s)	108, 242, 561, 608, 794, 1022
Tsp45I	GTSAC	1 cut(s)	201
TspDTI	ATGAA	2 cut(s)	530, 1103
TspRI	CASTG	1 cut(s)	118
VpaK11BI	GGWCC	1 cut(s)	1066
XapI	RAATTY	3 cut(s)	253, 424, 876
XceI	RCATGY	1 cut(s)	761
XmnI	GAANNNNTTC	1 cut(s)	1116
XspI	CTAG	2 cut(s)	768, 1058

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.